NASep 26, 2017
Joint Reconstruction via Coupled Bregman Iterations with Applications to PET-MR ImagingJulian Rasch, Eva-Maria Brinkmann, Martin Burger
Joint reconstruction has recently attracted a lot of attention, especially in the field of medical multi-modality imaging such as PET-MRI. Most of the developed methods rely on the comparison of image gradients, or more precisely their location, direction and magnitude, to make use of structural similarities between the images. A challenge and still an open issue for most of the methods is to handle images in entirely different scales, i.e. different magnitudes of gradients that cannot be dealt with by a global scaling of the data. We propose the use of generalized Bregman distances and infimal convolutions thereof with regard to the well-known total variation functional. The use of a total variation subgradient respectively the involved vector field rather than an image gradient naturally excludes the magnitudes of gradients, which in particular solves the scaling behavior. Additionally, the presented method features a weighting that allows to control the amount of interaction between channels. We give insights into the general behavior of the method, before we further tailor it to a particular application, namely PET-MRI joint reconstruction. To do so, we compute joint reconstruction results from blurry Poisson data for PET and undersampled Fourier data from MRI and show that we can gain a mutual benefit for both modalities. In particular, the results are superior to the respective separate reconstructions and other joint reconstruction methods.
NANov 30, 2017
Dynamic MRI Reconstruction from Undersampled Data with an Anatomical PrescanJulian Rasch, Ville Kolehmainen, Riikka Nivajärvi et al.
The goal of dynamic magnetic resonance imaging (dynamic MRI) is to visualize tissue properties and their local changes over time that are traceable in the MR signal. We propose a new variational approach for the reconstruction of subsampled dynamic MR data, which combines smooth, temporal regularization with spatial total variation regularization. In particular, it furthermore uses the infimal convolution of two total variation Bregman distances to incorporate structural a-priori information from an anatomical MRI prescan into the reconstruction of the dynamic image sequence. The method promotes the reconstructed image sequence to have a high structural similarity to the anatomical prior, while still allowing for local intensity changes which are smooth in time. The approach is evaluated using artificial data simulating functional magnetic resonance imaging (fMRI), and experimental dynamic contrast-enhanced magnetic resonance data from small animal imaging using radial golden angle sampling of the k-space.
NAOct 31, 2018
Unified Models for Second-Order TV-Type Regularisation in Imaging - A New Perspective Based on Vector OperatorsEva-Maria Brinkmann, Martin Burger, Joana Sarah Grah
We introduce a novel regulariser based on the natural vector field operations gradient, divergence, curl and shear. For suitable choices of the weighting parameters contained in our model it generalises well-known first- and second-order TV-type regularisation methods including TV, ICTV and TGV$^2$ and enables interpolation between them. To better understand the influence of each parameter, we characterise the nullspaces of the respective regularisation functionals. Analysing the continuous model, we conclude that it is not sufficient to combine penalisation of the divergence and the curl to achieve high-quality results, but interestingly it seems crucial that the penalty functional includes at least one component of the shear or suitable boundary conditions. We investigate which requirements regarding the choice of weighting parameters yield a rotational invariant approach. To guarantee physically meaningful reconstructions, implying that conservation laws for vectorial differential operators remain valid, we need a careful discretisation that we therefore discuss in detail.
NAJun 22, 2017
Bias-Reduction in Variational RegularizationEva-Maria Brinkmann, Martin Burger, Julian Rasch et al.
The aim of this paper is to introduce and study a two-step debiasing method for variational regularization. After solving the standard variational problem, the key idea is to add a consecutive debiasing step minimizing the data fidelity on an appropriate set, the so-called model manifold. The latter is defined by Bregman distances or infimal convolutions thereof, using the (uniquely defined) subgradient appearing in the optimality condition of the variational method. For particular settings, such as anisotropic $\ell^1$ and TV-type regularization, previously used debiasing techniques are shown to be special cases. The proposed approach is however easily applicable to a wider range of regularizations. The two-step debiasing is shown to be well-defined and to optimally reduce bias in a certain setting. In addition to visual and PSNR-based evaluations, different notions of bias and variance decompositions are investigated in numerical studies. The improvements offered by the proposed scheme are demonstrated and its performance is shown to be comparable to optimal results obtained with Bregman iterations.
NADec 17, 2014
Color Bregman TVMichael Moeller, Eva-Maria Brinkmann, Martin Burger et al.
In this paper we present a novel iterative procedure for multichannel image and data reconstruction using Bregman distances. With the motivation that multiple channels sharing a common subgradient with respect to a suitable regularization implies desirable properties such as a common edge set (and a common direction of the normals to the level lines) in the case of the total variation (TV), we propose to determine each iterate by regularizing each channel with a weighted linear combination of Bregman distances to all other image channels from the previous iteration. In this sense we generalize the Bregman iteration proposed by Osher et al. to multichannel images. We prove the convergence of the proposed scheme, analyze stationary points and present numerical experiments on color image denoising, which show the superior behavior of our approach in comparison to TV, TV with Bregman iterations on each channel separately, and vectorial TV. Additionally, we propose to use the infimal convolution of Bregman distances to different channels from the previous iteration to obtain the independence of the sign and hence the independence of the direction of the edge. While this work focuses on TV regularization, the proposed scheme can potentially improve any variational multichannel reconstruction method with a 1-homogeneous regularization.