NAMay 29, 2018
Reliable computer simulation methods for electrostatic biomolecular models based on the Poisson-Boltzmann equationJohannes Kraus, Svetoslav Nakov, Sergey Repin
In this paper we have derived explicitly computable bounds on the error in energy norms for the fully nonlinear Poisson-Boltzmann equation. Together with the computable bounds, we have also obtained efficient error indicators which can serve as a basis for a reliable adaptive finite element algorithm.
NAMar 15, 2018
Reliable numerical solution of a class of nonlinear elliptic problems generated by the Poisson-Boltzmann equationJohannes Kraus, Svetoslav Nakov, Sergey Repin
We consider a class of nonlinear elliptic problems associated with models in biophysics, which are described by the Poisson-Boltzmann equation (PBE). We prove mathematical correctness of the problem, study a suitable class of approximations, and deduce guaranteed and fully computable bounds of approximation errors. The latter goal is achieved by means of the approach suggested in [S. Repin, A posteriori error estimation for variational problems with uniformly convex functionals. Math. Comp., 69:481-500, 2000] for convex variational problems. Moreover, we establish the error identity, which defines the error measure natural for the considered class of problems and show that it yields computable majorants and minorants of the global error as well as indicators of local errors that provide efficient adaptation of meshes. Theoretical results are confirmed by a collection of numerical tests that includes problems on $2D$ and $3D$ Lipschitz domains.