Kim‐Doang Nguyen

Tan-Hanh Pham, Xianqi Li, Kim-Doang Nguyen

Automated medical image segmentation is becoming increasingly crucial to modern clinical practice, driven by the growing demand for precise diagnosis, the push towards personalized treatment plans, and the advancements in machine learning algorithms, especially the incorporation of deep learning methods. While convolutional neural networks (CNN) have been prevalent among these methods, the remarkable potential of Transformer-based models for computer vision tasks is gaining more acknowledgment. To harness the advantages of both CNN-based and Transformer-based models, we propose a simple yet effective UNet-Transformer (seUNet-Trans) model for medical image segmentation. In our approach, the UNet model is designed as a feature extractor to generate multiple feature maps from the input images, then the maps are propagated into a bridge layer, which is introduced to sequentially connect the UNet and the Transformer. In this stage, we approach the pixel-level embedding technique without position embedding vectors, aiming to make the model more efficient. Moreover, we apply spatial-reduction attention in the Transformer to reduce the computational/memory overhead. By leveraging the UNet architecture and the self-attention mechanism, our model not only retains the preservation of both local and global context information but also is capable of capturing long-range dependencies between input elements. The proposed model is extensively experimented on seven medical image segmentation datasets including polyp segmentation to demonstrate its efficacy. Comparison with several state-of-the-art segmentation models on these datasets shows the superior performance of our proposed seUNet-Trans network.

Tan-Hanh Pham, Kim-Doang Nguyen

Precision devices play an important role in enhancing production quality and productivity in agricultural systems. Therefore, the optimization of these devices is essential in precision agriculture. Recently, with the advancements of deep learning, there have been several studies aiming to harness its capabilities for improving spray system performance. However, the effectiveness of these methods heavily depends on the size of the training dataset, which is expensive and time-consuming to collect. To address the challenge of insufficient training samples, we developed an image generator named DropletGAN to generate images of droplets. The DropletGAN model is trained by using a small dataset captured by a high-speed camera and capable of generating images with progressively increasing resolution. The results demonstrate that the model can generate high-quality images with the size of 1024x1024. The generated images from the DropletGAN are evaluated using the Fréchet inception distance (FID) with an FID score of 11.29. Furthermore, this research leverages recent advancements in computer vision and deep learning to develop a light droplet detector using the synthetic dataset. As a result, the detection model achieves a 16.06% increase in mean average precision (mAP) when utilizing the synthetic dataset. To the best of our knowledge, this work stands as the first to employ a generative model for augmenting droplet detection. Its significance lies not only in optimizing nozzle design for constructing efficient spray systems but also in addressing the common challenge of insufficient data in various precision agriculture tasks. This work offers a critical contribution to conserving resources while striving for optimal and sustainable agricultural practices.

Tan-Hanh Pham, Ovidiu C. Andronesi, Xianqi Li et al.

Magnetic Resonance Spectroscopic Imaging (MRSI) is a powerful tool for non-invasive mapping of brain metabolites, providing critical insights into neurological conditions. However, its utility is often limited by missing or corrupted data due to motion artifacts, magnetic field inhomogeneities, or failed spectral fitting-especially in high resolution 3D acquisitions. To address this, we propose the first deep learning-based, mask-free framework for estimating missing data in MRSI metabolic maps. Unlike conventional restoration methods that rely on explicit masks to identify missing regions, our approach implicitly detects and estimates these areas using contextual spatial features through 2D and 3D U-Net architectures. We also introduce a progressive training strategy to enhance robustness under varying levels of data degradation. Our method is evaluated on both simulated and real patient datasets and consistently outperforms traditional interpolation techniques such as cubic and linear interpolation. The 2D model achieves an MSE of 0.002 and an SSIM of 0.97 with 20% missing voxels, while the 3D model reaches an MSE of 0.001 and an SSIM of 0.98 with 15% missing voxels. Qualitative results show improved fidelity in estimating missing data, particularly in metabolically heterogeneous regions and ventricular regions. Importantly, our model generalizes well to real-world datasets without requiring retraining or mask input. These findings demonstrate the effectiveness and broad applicability of mask-free deep learning for MRSI restoration, with strong potential for clinical and research integration.

Tan-Hanh Pham, Praneel Acharya, Sravanthi Bachina et al.

This work leverages the recent advancements of deep learning in image processing to find optimal locations that present the important characteristics of a field. The data for training are collected at different fields in local farms with five features: aspect, flow accumulation, slope, NDVI (normalized difference vegetation index), and yield. The soil sampling dataset is challenging because the ground truth is highly imbalanced binary images. Therefore, we approached the problem with two methods, the first approach involves utilizing a state-of-the-art model with the convolutional neural network (CNN) backbone, while the second is to innovate a deep-learning design grounded in the concepts of transformer and self-attention. Our framework is constructed with an encoder-decoder architecture with the self-attention mechanism as the backbone. In the encoder, the self-attention mechanism is the key feature extractor, which produces feature maps. In the decoder, we introduce atrous convolution networks to concatenate, fuse the extracted features, and then export the optimal locations for soil sampling. Currently, the model has achieved impressive results on the testing dataset, with a mean accuracy of 99.52%, a mean Intersection over Union (IoU) of 57.35%, and a mean Dice Coefficient of 71.47%, while the performance metrics of the state-of-the-art CNN-based model are 66.08%, 3.85%, and 1.98%, respectively. This indicates that our proposed model outperforms the CNN-based method on the soil-sampling dataset. To the best of our knowledge, our work is the first to provide a soil-sampling dataset with multiple attributes and leverage deep learning techniques to enable the automatic selection of soil-sampling sites. This work lays a foundation for novel applications of data science and machine-learning technologies to solve other emerging agricultural problems.