Soledad Le Clainche

LG
h-index20
19papers
363citations
Novelty40%
AI Score52

19 Papers

LGOct 20, 2022
Improving aircraft performance using machine learning: a review

Soledad Le Clainche, Esteban Ferrer, Sam Gibson et al.

This review covers the new developments in machine learning (ML) that are impacting the multi-disciplinary area of aerospace engineering, including fundamental fluid dynamics (experimental and numerical), aerodynamics, acoustics, combustion and structural health monitoring. We review the state of the art, gathering the advantages and challenges of ML methods across different aerospace disciplines and provide our view on future opportunities. The basic concepts and the most relevant strategies for ML are presented together with the most relevant applications in aerospace engineering, revealing that ML is improving aircraft performance and that these techniques will have a large impact in the near future.

LGJan 24, 2023
A predictive physics-aware hybrid reduced order model for reacting flows

Adrián Corrochano, Rodolfo S. M. Freitas, Alessandro Parente et al.

In this work, a new hybrid predictive Reduced Order Model (ROM) is proposed to solve reacting flow problems. This algorithm is based on a dimensionality reduction using Proper Orthogonal Decomposition (POD) combined with deep learning architectures. The number of degrees of freedom is reduced from thousands of temporal points to a few POD modes with their corresponding temporal coefficients. Two different deep learning architectures have been tested to predict the temporal coefficients, based on recursive (RNN) and convolutional (CNN) neural networks. From each architecture, different models have been created to understand the behavior of each parameter of the neural network. Results show that these architectures are able to predict the temporal coefficients of the POD modes, as well as the whole snapshots. The RNN shows lower prediction error for all the variables analyzed. The model was also found capable of predicting more complex simulations showing transfer learning capabilities.

LGDec 24, 2022
Forecasting through deep learning and modal decomposition in two-phase concentric jets

León Mata, Rodrigo Abadía-Heredia, Manuel Lopez-Martin et al.

This work aims to improve fuel chamber injectors' performance in turbofan engines, thus implying improved performance and reduction of pollutants. This requires the development of models that allow real-time prediction and improvement of the fuel/air mixture. However, the work carried out to date involves using experimental data (complicated to measure) or the numerical resolution of the complete problem (computationally prohibitive). The latter involves the resolution of a system of partial differential equations (PDE). These problems make difficult to develop a real-time prediction tool. Therefore, in this work, we propose using machine learning in conjunction with (complementarily cheaper) single-phase flow numerical simulations in the presence of tangential discontinuities to estimate the mixing process in two-phase flows. In this meaning we study the application of two proposed neural network (NN) models as PDE surrogate models. Where the future dynamics is predicted by the NN, given some preliminary information. We show the low computational cost required by these models, both in their training and inference phases. We also show how NN training can be improved by reducing data complexity through a modal decomposition technique called higher order dynamic mode decomposition (HODMD), which identifies the main structures inside flow dynamics and reconstructs the original flow using only these main structures. This reconstruction has the same number of samples and spatial dimension as the original flow, but with a less complex dynamics and preserving its main features. The core idea of this work is to test the limits of applicability of deep learning models to data forecasting in complex fluid dynamics problems. Generalization capabilities of the models are demonstrated by using the same NN architectures to forecast the future dynamics of four different two-phase flows.

13.8LGApr 23
A temporal deep learning framework for calibration of low-cost air quality sensors

Arindam Sengupta, Tony Bush, Ben Marner et al.

Low-cost air quality sensors (LCS) provide a practical alternative to expensive regulatory-grade instruments, making dense urban monitoring networks possible. Yet their adoption is limited by calibration challenges, including sensor drift, environmental cross-sensitivity, and variability in performance from device to device. This work presents a deep learning framework for calibrating LCS measurements of PM$_{2.5}$, PM$_{10}$, and NO$_2$ using a Long Short-Term Memory (LSTM) network, trained on co-located reference data from the OxAria network in Oxford, UK. Unlike the Random Forest (RF) baseline, which treats each observation independently, the proposed approach captures temporal dependencies and delayed environmental effects through sequence-based learning, achieving higher $R^2$ values across training, validation, and test sets for all three pollutants. A feature set is constructed combining time-lagged parameters, harmonic encodings, and interaction terms to improve generalization on unseen temporal windows. Validation of unseen calibrated values against the Equivalence Spreadsheet Tool 3.1 demonstrates regulatory compliance with expanded uncertainties of 22.11% for NO$_2$, 12.42% for PM$_{10}$, and 9.1% for PM$_{2.5}$.

AIFeb 26
Agentic Exploration of PDE Spaces using Latent Foundation Models for Parameterized Simulations

Abhijeet Vishwasrao, Francisco Giral, Mahmoud Golestanian et al.

Flow physics and more broadly physical phenomena governed by partial differential equations (PDEs), are inherently continuous, high-dimensional and often chaotic in nature. Traditionally, researchers have explored these rich spatiotemporal PDE solution spaces using laboratory experiments and/or computationally expensive numerical simulations. This severely limits automated and large-scale exploration, unlike domains such as drug discovery or materials science, where discrete, tokenizable representations naturally interface with large language models. We address this by coupling multi-agent LLMs with latent foundation models (LFMs), a generative model over parametrised simulations, that learns explicit, compact and disentangled latent representations of flow fields, enabling continuous exploration across governing PDE parameters and boundary conditions. The LFM serves as an on-demand surrogate simulator, allowing agents to query arbitrary parameter configurations at negligible cost. A hierarchical agent architecture orchestrates exploration through a closed loop of hypothesis, experimentation, analysis and verification, with a tool-modular interface requiring no user support. Applied to flow past tandem cylinders at Re = 500, the framework autonomously evaluates over 1,600 parameter-location pairs and discovers divergent scaling laws: a regime-dependent two-mode structure for minimum displacement thickness and a robust linear scaling for maximum momentum thickness, with both landscapes exhibiting a dual-extrema structure that emerges at the near-wake to co-shedding regime transition. The coupling of the learned physical representations with agentic reasoning establishes a general paradigm for automated scientific discovery in PDE-governed systems.

LGJan 16
GenDA: Generative Data Assimilation on Complex Urban Areas via Classifier-Free Diffusion Guidance

Francisco Giral, Álvaro Manzano, Ignacio Gómez et al.

Urban wind flow reconstruction is essential for assessing air quality, heat dispersion, and pedestrian comfort, yet remains challenging when only sparse sensor data are available. We propose GenDA, a generative data assimilation framework that reconstructs high-resolution wind fields on unstructured meshes from limited observations. The model employs a multiscale graph-based diffusion architecture trained on computational fluid dynamics (CFD) simulations and interprets classifier-free guidance as a learned posterior reconstruction mechanism: the unconditional branch learns a geometry-aware flow prior, while the sensor-conditioned branch injects observational constraints during sampling. This formulation enables obstacle-aware reconstruction and generalization across unseen geometries, wind directions, and mesh resolutions without retraining. We consider both sparse fixed sensors and trajectory-based observations using the same reconstruction procedure. When evaluated against supervised graph neural network (GNN) baselines and classical reduced-order data assimilation methods, GenDA reduces the relative root-mean-square error (RRMSE) by 25-57% and increases the structural similarity index (SSIM) by 23-33% across the tested meshes. Experiments are conducted on Reynolds-averaged Navier-Stokes (RANS) simulations of a real urban neighbourhood in Bristol, United Kingdom, at a characteristic Reynolds number of $\mathrm{Re}\approx2\times10^{7}$, featuring complex building geometry and irregular terrain. The proposed framework provides a scalable path toward generative, geometry-aware data assimilation for environmental monitoring in complex domains.

FLU-DYNDec 22, 2025
A Critical Assessment of Pattern Comparisons Between POD and Autoencoders in Intraventricular Flows

Eneko Lazpita, Andrés Bell-Navas, Jesús Garicano-Mena et al.

Understanding intraventricular hemodynamics requires compact and physically interpretable representations of the underlying flow structures, as characteristic flow patterns are closely associated with cardiovascular conditions and can support early detection of cardiac deterioration. Conventional visualization of velocity or pressure fields, however, provides limited insight into the coherent mechanisms driving these dynamics. Reduced-order modeling techniques, like Proper Orthogonal Decomposition (POD) and Autoencoder (AE) architectures, offer powerful alternatives to extract dominant flow features from complex datasets. This study systematically compares POD with several AE variants (Linear, Nonlinear, Convolutional, and Variational) using left ventricular flow fields obtained from computational fluid dynamics simulations. We show that, for a suitably chosen latent dimension, AEs produce modes that become nearly orthogonal and qualitatively resemble POD modes that capture a given percentage of kinetic energy. As the number of latent modes increases, AE modes progressively lose orthogonality, leading to linear dependence, spatial redundancy, and the appearance of repeated modes with substantial high-frequency content. This degradation reduces interpretability and introduces noise-like components into AE-based reduced-order models, potentially complicating their integration with physics-based formulations or neural-network surrogates. The extent of interpretability loss varies across the AEs, with nonlinear, convolutional, and variational models exhibiting distinct behaviors in orthogonality preservation and feature localization. Overall, the results indicate that AEs can reproduce POD-like coherent structures under specific latent-space configurations, while highlighting the need for careful mode selection to ensure physically meaningful representations of cardiac flow dynamics.

ROJul 9, 2024
Intercepting Unauthorized Aerial Robots in Controlled Airspace Using Reinforcement Learning

Francisco Giral, Ignacio Gómez, Soledad Le Clainche

The proliferation of unmanned aerial vehicles (UAVs) in controlled airspace presents significant risks, including potential collisions, disruptions to air traffic, and security threats. Ensuring the safe and efficient operation of airspace, particularly in urban environments and near critical infrastructure, necessitates effective methods to intercept unauthorized or non-cooperative UAVs. This work addresses the critical need for robust, adaptive systems capable of managing such threats through the use of Reinforcement Learning (RL). We present a novel approach utilizing RL to train fixed-wing UAV pursuer agents for intercepting dynamic evader targets. Our methodology explores both model-based and model-free RL algorithms, specifically DreamerV3, Truncated Quantile Critics (TQC), and Soft Actor-Critic (SAC). The training and evaluation of these algorithms were conducted under diverse scenarios, including unseen evasion strategies and environmental perturbations. Our approach leverages high-fidelity flight dynamics simulations to create realistic training environments. This research underscores the importance of developing intelligent, adaptive control systems for UAV interception, significantly contributing to the advancement of secure and efficient airspace management. It demonstrates the potential of RL to train systems capable of autonomously achieving these critical tasks.

70.3LGMay 7
AeroJEPA: Learning Semantic Latent Representations for Scalable 3D Aerodynamic Field Modeling

Francisco Giral, Abhijeet Vishwasrao, Andrea Arroyo Ramo et al.

Aerodynamic surrogate models are increasingly used to replace repeated high-fidelity CFD evaluations in many-query design settings, but current approaches still face two important limitations: they often scale poorly to the very large fields arising in realistic 3D aerodynamics, and they rarely produce latent representations that are directly useful for analysis and design. We introduce AeroJEPA, a Joint-Embedding Predictive Architecture for aerodynamic field modeling that addresses both issues. Rather than predicting the full flow field directly from geometry, AeroJEPA predicts a target latent representation of the flow from a context latent representation of the geometry and operating conditions, and optionally reconstructs the field through a continuous implicit decoder. This formulation decouples latent prediction from field resolution while encouraging the latent space to organize semantically. We evaluate AeroJEPA on two complementary datasets: HiLiftAeroML, which stresses the method in a high-fidelity regime with extremely large boundary-layer fields, and SuperWing, which tests large-scale generalization and latent-space optimization over a broad family of transonic wings. Across these benchmarks, AeroJEPA is competitive as a continuous surrogate for aerodynamic fields, scales naturally to high-resolution outputs, and learns context and predicted latents that encode geometry and aerodynamic quantities not used directly as supervision. We further show that the resulting latent space supports controlled interpolation, linear probing, concept-vector arithmetic, and a constrained design latent-optimization experiment. These results suggest that predictive latent learning is a promising direction for scalable and design-meaningful aerodynamic surrogate modeling.

IVApr 10, 2025Code
Heart Failure Prediction using Modal Decomposition and Masked Autoencoders for Scarce Echocardiography Databases

Andrés Bell-Navas, María Villalba-Orero, Enrique Lara-Pezzi et al.

Heart diseases constitute the main cause of international human defunction. According to the World Health Organization (WHO), approximately 18 million deaths happen each year due to precisely heart diseases. In particular, heart failures (HF) press the healthcare industry to develop systems for their early, rapid, and effective prediction. This work presents an automatic system based on a novel deep learning framework which analyses in real-time echocardiography video sequences for the challenging and more specific task of heart failure time prediction. This system works in two stages. The first one transforms the data from a database of echocardiography video sequences into a machine learning-compatible collection of annotated images which can be used in the training phase of any machine learning-based framework, including a deep learning-based one. This stage includes the use of the Higher Order Dynamic Mode Decomposition (HODMD) algorithm for both data augmentation and feature extraction. The second stage builds and trains a Vision Transformer (ViT). Self-supervised learning (SSL) methods, so far barely explored in the literature about heart failure prediction, are adopted to effectively train the ViT from scratch, even with scarce databases. The designed neural network analyses images from echocardiography sequences to estimate the time in which a heart failure will happen. The results obtained show the efficacy of the HODMD algorithm and the superiority of the proposed system with respect to several established ViT and Convolutional Neural Network (CNN) architectures. The source code will be incorporated into the next version release of the ModelFLOWs-app software (https://github.com/modelflows/ModelFLOWs-app).

FLU-DYNMay 2, 2025Code
An Adaptive Framework for Autoregressive Forecasting in CFD Using Hybrid Modal Decomposition and Deep Learning

Rodrigo Abadía-Heredia, Manuel Lopez-Martin, Soledad Le Clainche

This work presents, to the best of the authors' knowledge, the first generalizable and fully data-driven adaptive framework designed to stabilize deep learning (DL) autoregressive forecasting models over long time horizons, with the goal of reducing the computational cost required in computational fluid dynamics (CFD) simulations.The proposed methodology alternates between two phases: (i) predicting the evolution of the flow field over a selected time interval using a trained DL model, and (ii) updating the model with newly generated CFD data when stability degrades, thus maintaining accurate long-term forecasting. This adaptive retraining strategy ensures robustness while avoiding the accumulation of predictive errors typical in autoregressive models. The framework is validated across three increasingly complex flow regimes, from laminar to turbulent, demonstrating from 30 \% to 95 \% reduction in computational cost without compromising physical consistency or accuracy. Its entirely data-driven nature makes it easily adaptable to a wide range of time-dependent simulation problems. The code implementing this methodology is available as open-source and it will be integrated into the upcoming release of the ModelFLOWs-app.

IVApr 30, 2024
Automatic Cardiac Pathology Recognition in Echocardiography Images Using Higher Order Dynamic Mode Decomposition and a Vision Transformer for Small Datasets

Andrés Bell-Navas, Nourelhouda Groun, María Villalba-Orero et al.

Heart diseases are the main international cause of human defunction. According to the WHO, nearly 18 million people decease each year because of heart diseases. Also considering the increase of medical data, much pressure is put on the health industry to develop systems for early and accurate heart disease recognition. In this work, an automatic cardiac pathology recognition system based on a novel deep learning framework is proposed, which analyses in real-time echocardiography video sequences. The system works in two stages. The first one transforms the data included in a database of echocardiography sequences into a machine-learning-compatible collection of annotated images which can be used in the training stage of any kind of machine learning-based framework, and more specifically with deep learning. This includes the use of the Higher Order Dynamic Mode Decomposition (HODMD) algorithm, for the first time to the authors' knowledge, for both data augmentation and feature extraction in the medical field. The second stage is focused on building and training a Vision Transformer (ViT), barely explored in the related literature. The ViT is adapted for an effective training from scratch, even with small datasets. The designed neural network analyses images from an echocardiography sequence to predict the heart state. The results obtained show the superiority of the proposed system and the efficacy of the HODMD algorithm, even outperforming pretrained Convolutional Neural Networks (CNNs), which are so far the method of choice in the literature.

FLU-DYNApr 27, 2024
Generalization capabilities and robustness of hybrid models grounded in physics compared to purely deep learning models

Rodrigo Abadía-Heredia, Adrián Corrochano, Manuel Lopez-Martin et al.

This study investigates the generalization capabilities and robustness of purely deep learning (DL) models and hybrid models based on physical principles in fluid dynamics applications, specifically focusing on iteratively forecasting the temporal evolution of flow dynamics. Three autoregressive models were compared: a hybrid model (POD-DL) that combines proper orthogonal decomposition (POD) with a long-short term memory (LSTM) layer, a convolutional autoencoder combined with a convolutional LSTM (ConvLSTM) layer and a variational autoencoder (VAE) combined with a ConvLSTM layer. These models were tested on two high-dimensional, nonlinear datasets representing the velocity field of flow past a circular cylinder in both laminar and turbulent regimes. The study used latent dimension methods, enabling a bijective reduction of high-dimensional dynamics into a lower-order space to facilitate future predictions. While the VAE and ConvLSTM models accurately predicted laminar flow, the hybrid POD-DL model outperformed the others across both laminar and turbulent flow regimes. This success is attributed to the model's ability to incorporate modal decomposition, reducing the dimensionality of the data, by a non-parametric method, and simplifying the forecasting component. By leveraging POD, the model not only gained insight into the underlying physics, improving prediction accuracy with less training data, but also reduce the number of trainable parameters as POD is non-parametric. The findings emphasize the potential of hybrid models, particularly those integrating modal decomposition and deep learning, in predicting complex flow dynamics.

RONov 5, 2024
Transformer-Based Fault-Tolerant Control for Fixed-Wing UAVs Using Knowledge Distillation and In-Context Adaptation

Francisco Giral, Ignacio Gómez, Ricardo Vinuesa et al.

This study presents a transformer-based approach for fault-tolerant control in fixed-wing Unmanned Aerial Vehicles (UAVs), designed to adapt in real time to dynamic changes caused by structural damage or actuator failures. Unlike traditional Flight Control Systems (FCSs) that rely on classical control theory and struggle under severe alterations in dynamics, our method directly maps outer-loop reference values -- altitude, heading, and airspeed -- into control commands using the in-context learning and attention mechanisms of transformers, thus bypassing inner-loop controllers and fault-detection layers. Employing a teacher-student knowledge distillation framework, the proposed approach trains a student agent with partial observations by transferring knowledge from a privileged expert agent with full observability, enabling robust performance across diverse failure scenarios. Experimental results demonstrate that our transformer-based controller outperforms industry-standard FCS and state-of-the-art reinforcement learning (RL) methods, maintaining high tracking accuracy and stability in nominal conditions and extreme failure cases, highlighting its potential for enhancing UAV operational safety and reliability.

IVNov 25, 2024
EigenHearts: Cardiac Diseases Classification Using EigenFaces Approach

Nourelhouda Groun, Maria Villalba-Orero, Lucia Casado-Martin et al.

In the realm of cardiovascular medicine, medical imaging plays a crucial role in accurately classifying cardiac diseases and making precise diagnoses. However, the field faces significant challenges when integrating data science techniques, as a significant volume of images is required for these techniques. As a consequence, it is necessary to investigate different avenues to overcome this challenge. In this contribution, we offer an innovative tool to conquer this limitation. In particular, we delve into the application of a well recognized method known as the EigenFaces approach to classify cardiac diseases. This approach was originally motivated for efficiently representing pictures of faces using principal component analysis, which provides a set of eigenvectors (aka eigenfaces), explaining the variation between face images. As this approach proven to be efficient for face recognition, it motivated us to explore its efficiency on more complicated data bases. In particular, we integrate this approach, with convolutional neural networks (CNNs) to classify echocardiography images taken from mice in five distinct cardiac conditions (healthy, diabetic cardiomyopathy, myocardial infarction, obesity and TAC hypertension). Performing a preprocessing step inspired from the eigenfaces approach on the echocardiography datasets, yields sets of pod modes, which we will call eigenhearts. To demonstrate the proposed approach, we compare two testcases: (i) supplying the CNN with the original images directly, (ii) supplying the CNN with images projected into the obtained pod modes. The results show a substantial and noteworthy enhancement when employing SVD for pre-processing, with classification accuracy increasing by approximately 50%.

FLU-DYNApr 9, 2025
Hybrid machine learning models based on physical patterns to accelerate CFD simulations: a short guide on autoregressive models

Arindam Sengupta, Rodrigo Abadía-Heredia, Ashton Hetherington et al.

Accurate modeling of the complex dynamics of fluid flows is a fundamental challenge in computational physics and engineering. This study presents an innovative integration of High-Order Singular Value Decomposition (HOSVD) with Long Short-Term Memory (LSTM) architectures to address the complexities of reduced-order modeling (ROM) in fluid dynamics. HOSVD improves the dimensionality reduction process by preserving multidimensional structures, surpassing the limitations of Singular Value Decomposition (SVD). The methodology is tested across numerical and experimental data sets, including two- and three-dimensional (2D and 3D) cylinder wake flows, spanning both laminar and turbulent regimes. The emphasis is also on exploring how the depth and complexity of LSTM architectures contribute to improving predictive performance. Simpler architectures with a single dense layer effectively capture the periodic dynamics, demonstrating the network's ability to model non-linearities and chaotic dynamics. The addition of extra layers provides higher accuracy at minimal computational cost. These additional layers enable the network to expand its representational capacity, improving the prediction accuracy and reliability. The results demonstrate that HOSVD outperforms SVD in all tested scenarios, as evidenced by using different error metrics. Efficient mode truncation by HOSVD-based models enables the capture of complex temporal patterns, offering reliable predictions even in challenging, noise-influenced data sets. The findings underscore the adaptability and robustness of HOSVD-LSTM architectures, offering a scalable framework for modeling fluid dynamics.

FLU-DYNNov 26, 2024
LC-SVD-DLinear: A low-cost physics-based hybrid machine learning model for data forecasting using sparse measurements

Ashton Hetherington, Javier López Leonés, Soledad Le Clainche

This article introduces a novel methodology that integrates singular value decomposition (SVD) with a shallow linear neural network for forecasting high resolution fluid mechanics data. The method, termed LC-SVD-DLinear, combines a low-cost variant of singular value decomposition (LC-SVD) with the DLinear architecture, which decomposes the input features-specifically, the temporal coefficients-into trend and seasonality components, enabling a shallow neural network to capture the non-linear dynamics of the temporal data. This methodology uses under-resolved data, which can either be input directly into the hybrid model or downsampled from high resolution using two distinct techniques provided by the methodology. Working with under-resolved cases helps reduce the overall computational cost. Additionally, we present a variant of the method, LC-HOSVD-DLinear, which combines a low-cost version of the high-order singular value decomposition (LC-HOSVD) algorithm with the DLinear network, designed for high-order data. These approaches have been validated using two datasets: first, a numerical simulation of three-dimensional flow past a circular cylinder at $Re = 220$; and second, an experimental dataset of turbulent flow passing a circular cylinder at $Re = 2600$. The combination of these datasets demonstrates the robustness of the method. The forecasting and reconstruction results are evaluated through various error metrics, including uncertainty quantification. The work developed in this article will be included in the next release of ModelFLOWs-app

IVNov 24, 2024
A Novel Data Augmentation Tool for Enhancing Machine Learning Classification: A New Application of the Higher Order Dynamic Mode Decomposition for Improved Cardiac Disease Identification

Nourelhouda Groun, Maria Villalba-Orero, Lucia Casado-Martin et al.

In this work, a data-driven, modal decomposition method, the higher order dynamic mode decomposition (HODMD), is combined with a convolutional neural network (CNN) in order to improve the classification accuracy of several cardiac diseases using echocardiography images. The HODMD algorithm is used first as feature extraction technique for the echocardiography datasets, taken from both healthy mice and mice afflicted by different cardiac diseases (Diabetic Cardiomyopathy, Obesity, TAC Hypertrophy and Myocardial Infarction). A total number of 130 echocardiography datasets are used in this work. The dominant features related to each cardiac disease were identified and represented by the HODMD algorithm as a set of DMD modes, which then are used as the input to the CNN. In a way, the database dimension was augmented, hence HODMD has been used, for the first time to the authors knowledge, for data augmentation in the machine learning framework. Six sets of the original echocardiography databases were hold out to be used as unseen data to test the performance of the CNN. In order to demonstrate the efficiency of the HODMD technique, two testcases are studied: the CNN is first trained using the original echocardiography images only, and second training the CNN using a combination of the original images and the DMD modes. The classification performance of the designed trained CNN shows that combining the original images with the DMD modes improves the results in all the testcases, as it improves the accuracy by up to 22%. These results show the great potential of using the HODMD algorithm as a data augmentation technique.

FLU-DYNSep 3, 2021
Towards extraction of orthogonal and parsimonious non-linear modes from turbulent flows

Hamidreza Eivazi, Soledad Le Clainche, Sergio Hoyas et al.

We propose a deep probabilistic-neural-network architecture for learning a minimal and near-orthogonal set of non-linear modes from high-fidelity turbulent-flow-field data useful for flow analysis, reduced-order modeling, and flow control. Our approach is based on $β$-variational autoencoders ($β$-VAEs) and convolutional neural networks (CNNs), which allow us to extract non-linear modes from multi-scale turbulent flows while encouraging the learning of independent latent variables and penalizing the size of the latent vector. Moreover, we introduce an algorithm for ordering VAE-based modes with respect to their contribution to the reconstruction. We apply this method for non-linear mode decomposition of the turbulent flow through a simplified urban environment, where the flow-field data is obtained based on well-resolved large-eddy simulations (LESs). We demonstrate that by constraining the shape of the latent space, it is possible to motivate the orthogonality and extract a set of parsimonious modes sufficient for high-quality reconstruction. Our results show the excellent performance of the method in the reconstruction against linear-theory-based decompositions. Moreover, we compare our method with available AE-based models. We show the ability of our approach in the extraction of near-orthogonal modes that may lead to interpretability.