Amrit Krishnan

Fatemeh Tavakoli, D. B. Emerson, Sana Ayromlou et al.

Federated learning (FL) is increasingly being recognized as a key approach to overcoming the data silos that so frequently obstruct the training and deployment of machine-learning models in clinical settings. This work contributes to a growing body of FL research specifically focused on clinical applications along three important directions. First, we expand the FLamby benchmark (du Terrail et al., 2022a) to include a comprehensive evaluation of personalized FL methods and demonstrate substantive performance improvements over the original results. Next, we advocate for a comprehensive checkpointing and evaluation framework for FL to reflect practical settings and provide multiple comparison baselines. To this end, an open-source library aimed at making FL experimentation simpler and more reproducible is released. Finally, we propose an important ablation of PerFCL (Zhang et al., 2022). This ablation results in a natural extension of FENDA (Kim et al., 2016) to the FL setting. Experiments conducted on the FLamby benchmark and GEMINI datasets (Verma et al., 2017) show that the proposed approach is robust to heterogeneous clinical data and often outperforms existing global and personalized FL techniques, including PerFCL.

Adibvafa Fallahpour, Mahshid Alinoori, Wenqian Ye et al.

Transformers have significantly advanced the modeling of Electronic Health Records (EHR), yet their deployment in real-world healthcare is limited by several key challenges. Firstly, the quadratic computational cost and insufficient context length of these models hinder hospitals' ability in processing the extensive medical histories typical in EHR data. Additionally, existing models employ separate finetuning for each clinical task, complicating maintenance in healthcare environments. Moreover, these models focus exclusively on either clinical prediction or EHR forecasting, lacking proficiency in both tasks. To overcome these limitations, we introduce EHRMamba, a robust foundation model built on the Mamba architecture. EHRMamba can process sequences up to 300% longer than previous models due to its linear computational cost. We also introduce a novel approach to Multitask Prompted Finetuning (MPF) for EHR data, which enables EHRMamba to simultaneously learn multiple clinical tasks in a single finetuning phase, significantly enhancing deployment and cross-task generalization. Furthermore, our model leverages the HL7 FHIR data standard to simplify integration into existing hospital systems. Alongside EHRMamba, we open-source Odyssey, a toolkit designed to support the development and deployment of EHR foundation models, with an emphasis on data standardization and interpretability. Our evaluations on the MIMIC-IV dataset demonstrate that EHRMamba advances state-of-the-art performance across 6 major clinical tasks and excels in EHR forecasting, marking a significant leap forward in the field.

Vahid Balazadeh, Michael Cooper, David Pellow et al. · utoronto

We present the design process and findings of the pre-conference workshop at the Machine Learning for Healthcare Conference (2024) entitled Red Teaming Large Language Models for Healthcare, which took place on August 15, 2024. Conference participants, comprising a mix of computational and clinical expertise, attempted to discover vulnerabilities -- realistic clinical prompts for which a large language model (LLM) outputs a response that could cause clinical harm. Red-teaming with clinicians enables the identification of LLM vulnerabilities that may not be recognised by LLM developers lacking clinical expertise. We report the vulnerabilities found, categorise them, and present the results of a replication study assessing the vulnerabilities across all LLMs provided.

Faiza Khan Khattak, Vallijah Subasri, Amrit Krishnan et al.

Machine Learning Health Operations (MLHOps) is the combination of processes for reliable, efficient, usable, and ethical deployment and maintenance of machine learning models in healthcare settings. This paper provides both a survey of work in this area and guidelines for developers and clinicians to deploy and maintain their own models in clinical practice. We cover the foundational concepts of general machine learning operations, describe the initial setup of MLHOps pipelines (including data sources, preparation, engineering, and tools). We then describe long-term monitoring and updating (including data distribution shifts and model updating) and ethical considerations (including bias, fairness, interpretability, and privacy). This work therefore provides guidance across the full pipeline of MLHOps from conception to initial and ongoing deployment.

Samuel Scheidegger, Joachim Benjaminsson, Emil Rosenberg et al.

Monocular cameras are one of the most commonly used sensors in the automotive industry for autonomous vehicles. One major drawback using a monocular camera is that it only makes observations in the two dimensional image plane and can not directly measure the distance to objects. In this paper, we aim at filling this gap by developing a multi-object tracking algorithm that takes an image as input and produces trajectories of detected objects in a world coordinate system. We solve this by using a deep neural network trained to detect and estimate the distance to objects from a single input image. The detections from a sequence of images are fed in to a state-of-the art Poisson multi-Bernoulli mixture tracking filter. The combination of the learned detector and the PMBM filter results in an algorithm that achieves 3D tracking using only mono-camera images as input. The performance of the algorithm is evaluated both in 3D world coordinates, and 2D image coordinates, using the publicly available KITTI object tracking dataset. The algorithm shows the ability to accurately track objects, correctly handle data associations, even when there is a big overlap of the objects in the image, and is one of the top performing algorithms on the KITTI object tracking benchmark. Furthermore, the algorithm is efficient, running on average close to 20 frames per second.