Abhilash Neog

M. Maruf, Arka Daw, Kazi Sajeed Mehrab et al. · microsoft-research

Images are increasingly becoming the currency for documenting biodiversity on the planet, providing novel opportunities for accelerating scientific discoveries in the field of organismal biology, especially with the advent of large vision-language models (VLMs). We ask if pre-trained VLMs can aid scientists in answering a range of biologically relevant questions without any additional fine-tuning. In this paper, we evaluate the effectiveness of 12 state-of-the-art (SOTA) VLMs in the field of organismal biology using a novel dataset, VLM4Bio, consisting of 469K question-answer pairs involving 30K images from three groups of organisms: fishes, birds, and butterflies, covering five biologically relevant tasks. We also explore the effects of applying prompting techniques and tests for reasoning hallucination on the performance of VLMs, shedding new light on the capabilities of current SOTA VLMs in answering biologically relevant questions using images. The code and datasets for running all the analyses reported in this paper can be found at https://github.com/sammarfy/VLM4Bio.

Kazi Sajeed Mehrab, M. Maruf, Arka Daw et al.

We introduce Fish-Visual Trait Analysis (Fish-Vista), the first organismal image dataset designed for the analysis of visual traits of aquatic species directly from images using problem formulations in computer vision. Fish-Vista contains 69,126 annotated images spanning 4,154 fish species, curated and organized to serve three downstream tasks of species classification, trait identification, and trait segmentation. Our work makes two key contributions. First, we perform a fully reproducible data processing pipeline to process images sourced from various museum collections. We annotate these images with carefully curated labels from biological databases and manual annotations to create an AI-ready dataset of visual traits, contributing to the advancement of AI in biodiversity science. Second, our proposed downstream tasks offer fertile grounds for novel computer vision research in addressing a variety of challenges such as long-tailed distributions, out-of-distribution generalization, learning with weak labels, explainable AI, and segmenting small objects. We benchmark the performance of several existing methods for our proposed tasks to expose future research opportunities in AI for biodiversity science problems involving visual traits.

Medha Sawhney, Abhilash Neog, Mridul Khurana et al.

Diffusion-based solvers for partial differential equations (PDEs) are often bottle-necked by slow gradient-based test-time optimization routines that use PDE residuals for loss guidance. They additionally suffer from optimization instabilities and are unable to dynamically adapt their inference scheme in the presence of noisy PDE residuals. To address these limitations, we introduce PRISMA (PDE Residual Informed Spectral Modulation with Attention), a conditional diffusion neural operator that embeds PDE residuals directly into the model's architecture via attention mechanisms in the spectral domain, enabling gradient-descent free inference. In contrast to previous methods that use PDE loss solely as external optimization targets, PRISMA integrates PDE residuals as integral architectural features, making it inherently fast, robust, accurate, and free from sensitive hyperparameter tuning. We show that PRISMA has competitive accuracy, at substantially lower inference costs, compared to previous methods across five benchmark PDEs, especially with noisy observations, while using 10x to 100x fewer denoising steps, leading to 15x to 250x faster inference.

Elham Nasarian, Abhilash Neog, Kwok-Leung Tsui et al.

Integrating large language models (LLMs) into patient-facing healthcare systems offers significant potential to improve access to medical information. However, ensuring clinical safety and factual reliability remains a critical challenge. In practice, AI-generated responses may be conditionally correct yet medically inappropriate, as models often fail to interpret patient context and tend to produce agreeable responses rather than challenge unsafe assumptions. Unlike clinicians, who infer risk from incomplete information, LLMs frequently lack contextual awareness. Moreover, real-world patient interactions are open-ended and underspecified, unlike structured benchmark settings. We present CareGuardAI, a risk-aware safety framework for patient-facing medical question answering that addresses two key failure modes: clinical safety risk and hallucination risk. The framework introduces Clinical Safety Risk Assessment (SRA), inspired by ISO 14971, and Hallucination Risk Assessment (HRA) to evaluate medical risk and factual reliability. At inference time, CareGuardAI employs a multi-stage pipeline consisting of a controller agent, safety-constrained generation, and dual risk evaluation, followed by iterative refinement when necessary. Responses are released only when both SRA and HRA are less than or equal to 2, ensuring clinically acceptable outputs with bounded latency. We evaluate CareGuardAI on PatientSafeBench, MedSafetyBench, and MedHallu, covering both safety and hallucination detection. Across these benchmarks, the framework consistently outperforms strong baseline models, including GPT-4o-mini, demonstrating the importance of context-aware, risk-based, inference-time safety mechanisms for reliable deployment in healthcare.

Abhilash Neog, Arka Daw, Sepideh Fatemi Khorasgani et al.

Modeling Irregularly-sampled and Multivariate Time Series (IMTS) is crucial across a variety of applications where different sets of variates may be missing at different time-steps due to sensor malfunctions or high data acquisition costs. Existing approaches for IMTS either consider a two-stage impute-then-model framework or involve specialized architectures specific to a particular model and task. We perform a series of experiments to derive novel insights about the performance of IMTS methods on a variety of semi-synthetic and real-world datasets for both classification and forecasting. We also introduce Missing Feature-aware Time Series Modeling (MissTSM) or MissTSM, a novel model-agnostic and imputation-free approach for IMTS modeling. We show that MissTSM shows competitive performance compared to other IMTS approaches, especially when the amount of missing values is large and the data lacks simplistic periodic structures - conditions common to real-world IMTS applications.

Atharva Pandey, Abhilash Neog, Gautam Jajoo

Time-series Foundation Models (TSFMs) have recently emerged as a universal paradigm for learning across diverse temporal domains. However, despite their empirical success, the internal mechanisms by which these models represent fundamental time-series concepts remain poorly understood. In this work, we undertake a systematic investigation of concept interpretability in TSFMs. Specifically, we examine: (i) which layers encode which concepts, (ii) whether concept parameters are linearly recoverable, (iii) how representations evolve in terms of concept disentanglement and abstraction across model depth, and (iv) how models process compositions of concepts. We systematically probe these questions using layer-wise analyses, linear recoverability tests, and representation similarity measures, providing a structured account of TSFM semantics. The resulting insights show that early layers mainly capture local, time-domain patterns (e.g., AR(1), level shifts, trends), while deeper layers encode dispersion and change-time signals, with spectral and warping factors remaining the hardest to recover linearly. In compositional settings, however, probe performance degrades, revealing interference between concepts. This highlights that while atomic concepts are reliably localized, composition remains a challenge, underscoring a key limitation in current TSFMs' ability to represent interacting temporal phenomena.

Amartya Dutta, Kazi Sajeed Mehrab, Medha Sawhney et al.

Scene-Graph Generation (SGG) seeks to recognize objects in an image and distill their salient pairwise relationships. Most methods depend on dataset-specific supervision to learn the variety of interactions, restricting their usefulness in open-world settings, involving novel objects and/or relations. Even methods that leverage large Vision Language Models (VLMs) typically require benchmark-specific fine-tuning. We introduce Open-World SGG, a training-free, efficient, model-agnostic framework that taps directly into the pretrained knowledge of VLMs to produce scene graphs with zero additional learning. Casting SGG as a zero-shot structured-reasoning problem, our method combines multimodal prompting, embedding alignment, and a lightweight pair-refinement strategy, enabling inference over unseen object vocabularies and relation sets. To assess this setting, we formalize an Open-World evaluation protocol that measures performance when no SGG-specific data have been observed either in terms of objects and relations. Experiments on Visual Genome, Open Images V6, and the Panoptic Scene Graph (PSG) dataset demonstrate the capacity of pretrained VLMs to perform relational understanding without task-level training.