Junggu Choi

Junggu Choi, Kion Kim, Soohyun Park et al.

Diverse cases regarding the impact, with its related factors, of the COVID-19 pandemic on mental health have been reported in previous studies. College student groups have been frequently selected as the target population in previous studies because they are easily affected by pandemics. In this study, multivariable datasets were collected from 751 college students based on the complex relationships between various mental health factors. We utilized quantum annealing (QA)-based feature selection algorithms that were executed by commercial D-Wave quantum computers to determine the changes in the relative importance of the associated factors before and after the pandemic. Multivariable linear regression (MLR) and XGBoost models were also applied to validate the QA-based algorithms. Based on the experimental results, we confirm that QA-based algorithms have comparable capabilities in factor analysis research to the MLR models that have been widely used in previous studies. Furthermore, the performance of the QA-based algorithms was validated through the important factor results from the algorithms. Pandemic-related factors (e.g., confidence in the social system) and psychological factors (e.g., decision-making in uncertain situations) were more important in post-pandemic conditions. We believe that our study will serve as a reference for researchers studying similar topics.

Jeong-Jae Kim, Yeseul Jeon, SuMin Yu et al.

There have been several attempts to use deep learning based on brain fMRI signals to classify cognitive impairment diseases. However, deep learning is a hidden black box model that makes it difficult to interpret the process of classification. To address this issue, we propose a novel analytical framework that interprets the classification result from deep learning processes. We first derive the region of interest (ROI) functional connectivity network (FCN) by embedding functions based on their similar signal patterns. Then, using the self-attention equipped deep learning model, we classify diseases based on their FCN. Finally, in order to interpret the classification results, we employ a latent space item-response interaction network model to identify the significant functions that exhibit distinct connectivity patterns when compared to other diseases. The application of this proposed framework to the four types of cognitive impairment shows that our approach is valid for determining the significant ROI functions.

Junggu Choi, Tak Hur, Daniel K. Park et al.

Following the recent development of quantum machine learning techniques, the literature has reported several quantum machine learning algorithms for disease detection. This study explores the application of a hybrid quantum-classical algorithm for classifying region-of-interest time-series data obtained from resting-state functional magnetic resonance imaging in patients with early-stage cognitive impairment based on the importance of cognitive decline for dementia or aging. Classical one-dimensional convolutional layers are used together with quantum convolutional neural networks in our hybrid algorithm. In the classical simulation, the proposed hybrid algorithms showed higher balanced accuracies than classical convolutional neural networks under the similar training conditions. Moreover, a total of nine brain regions (left precentral gyrus, right superior temporal gyrus, left rolandic operculum, right rolandic operculum, left parahippocampus, right hippocampus, left medial frontal gyrus, right cerebellum crus, and cerebellar vermis) among 116 brain regions were found to be relatively effective brain regions for the classification based on the model performances. The associations of the selected nine regions with cognitive decline, as found in previous studies, were additionally validated through seed-based functional connectivity analysis. We confirmed both the improvement of model performance with the quantum convolutional neural network and neuroscientific validities of brain regions from our hybrid quantum-classical model.

Junggu Choi, Chansu Yu, Kyle L. Jung et al.

Identifying key biomarkers for COVID-19 from high-dimensional multi-omics data is critical for advancing both diagnostic and pathogenesis research. In this study, we evaluated the applicability of the Quantum Support Vector Machine (QSVM) algorithm for biomarker-based classification of COVID-19. Proteomic and metabolomic biomarkers from two independent datasets were ranked by importance using ridge regression and grouped accordingly. The top- and bottom-ranked biomarker sets were then used to train and evaluate both classical SVM (CSVM) and QSVM models, serving as predictive and negative control inputs, respectively. The QSVM was implemented with multiple quantum kernels, including amplitude encoding, angle encoding, the ZZ feature map, and the projected quantum kernel. Across various experimental settings, QSVM consistently achieved classification performance that was comparable to or exceeded that of CSVM, while reflecting the importance rankings by ridge regression. Although the experiments were conducted in numerical simulation, our findings highlight the potential of QSVM as a promising approach for multi-omics data analysis in biomedical research.