Gert Kootstra

Akshay K. Burusa, Joost Scholten, David Rapado Rincon et al.

Searching and detecting the task-relevant parts of plants is important to automate harvesting and de-leafing of tomato plants using robots. This is challenging due to high levels of occlusion in tomato plants. Active vision is a promising approach in which the robot strategically plans its camera viewpoints to overcome occlusion and improve perception accuracy. However, current active-vision algorithms cannot differentiate between relevant and irrelevant plant parts and spend time on perceiving irrelevant plant parts. This work proposed a semantics-aware active-vision strategy that uses semantic information to identify the relevant plant parts and prioritise them during view planning. The proposed strategy was evaluated on the task of searching and detecting the relevant plant parts using simulation and real-world experiments. In simulation experiments, the semantics-aware strategy proposed could search and detect 81.8% of the relevant plant parts using nine viewpoints. It was significantly faster and detected more plant parts than predefined, random, and volumetric active-vision strategies that do not use semantic information. The strategy proposed was also robust to uncertainty in plant and plant-part positions, plant complexity, and different viewpoint-sampling strategies. In real-world experiments, the semantics-aware strategy could search and detect 82.7% of the relevant plant parts using seven viewpoints, under complex greenhouse conditions with natural variation and occlusion, natural illumination, sensor noise, and uncertainty in camera poses. The results of this work clearly indicate the advantage of using semantics-aware active vision for targeted perception of plant parts and its applicability in the real world. It can significantly improve the efficiency of automated harvesting and de-leafing in tomato crop production.

David Rapado Rincon, Eldert J. van Henten, Gert Kootstra

The ability to accurately represent and localise relevant objects is essential for robots to carry out tasks effectively. Traditional approaches, where robots simply capture an image, process that image to take an action, and then forget the information, have proven to struggle in the presence of occlusions. Methods using multi-view perception, which have the potential to address some of these problems, require a world model that guides the collection, integration and extraction of information from multiple viewpoints. Furthermore, constructing a generic representation that can be applied in various environments and tasks is a difficult challenge. In this paper, a novel approach for building generic representations in occluded agro-food environments using multi-view perception and 3D multi-object tracking is introduced. The method is based on a detection algorithm that generates partial point clouds for each detected object, followed by a 3D multi-object tracking algorithm that updates the representation over time. The accuracy of the representation was evaluated in a real-world environment, where successful representation and localisation of tomatoes in tomato plants were achieved, despite high levels of occlusion, with the total count of tomatoes estimated with a maximum error of 5.08% and the tomatoes tracked with an accuracy up to 71.47%. Novel tracking metrics were introduced, demonstrating that valuable insight into the errors in localising and representing the fruits can be provided by their use. This approach presents a novel solution for building representations in occluded agro-food environments, demonstrating potential to enable robots to perform tasks effectively in these challenging environments.

Akshay K. Burusa, Eldert J. van Henten, Gert Kootstra

Robots in tomato greenhouses need to perceive the plant and plant parts accurately to automate monitoring, harvesting, and de-leafing tasks. Existing perception systems struggle with the high levels of occlusion in plants and often result in poor perception accuracy. One reason for this is because they use fixed cameras or predefined camera movements. Next-best-view (NBV) planning presents an alternate approach, in which the camera viewpoints are reasoned and strategically planned such that the perception accuracy is improved. However, existing NBV-planning algorithms are agnostic to the task-at-hand and give equal importance to all the plant parts. This strategy is inefficient for greenhouse tasks that require targeted perception of specific plant parts, such as the perception of leaf nodes for de-leafing. To improve targeted perception in complex greenhouse environments, NBV planning algorithms need an attention mechanism to focus on the task-relevant plant parts. In this paper, the role of attention in improving targeted perception using an attention-driven NBV planning strategy was investigated. Through simulation experiments using plants with high levels of occlusion and structural complexity, it was shown that focusing attention on task-relevant plant parts can significantly improve the speed and accuracy of 3D reconstruction. Further, with real-world experiments, it was shown that these benefits extend to complex greenhouse conditions with natural variation and occlusion, natural illumination, sensor noise, and uncertainty in camera poses. The results clearly indicate that using attention-driven NBV planning in greenhouses can significantly improve the efficiency of perception and enhance the performance of robotic systems in greenhouse crop production.

Akshay K. Burusa, Eldert J. van Henten, Gert Kootstra

Robots are increasingly used in tomato greenhouses to automate labour-intensive tasks such as selective harvesting and de-leafing. To perform these tasks, robots must be able to accurately and efficiently perceive the plant nodes that need to be cut, despite the high levels of occlusion from other plant parts. We formulate this problem as a local next-best-view (NBV) planning task where the robot has to plan an efficient set of camera viewpoints to overcome occlusion and improve the quality of perception. Our formulation focuses on quickly improving the perception accuracy of a single target node to maximise its chances of being cut. Previous methods of NBV planning mostly focused on global view planning and used random sampling of candidate viewpoints for exploration, which could suffer from high computational costs, ineffective view selection due to poor candidates, or non-smooth trajectories due to inefficient sampling. We propose a gradient-based NBV planner using differential ray sampling, which directly estimates the local gradient direction for viewpoint planning to overcome occlusion and improve perception. Through simulation experiments, we showed that our planner can handle occlusions and improve the 3D reconstruction and position estimation of nodes equally well as a sampling-based NBV planner, while taking ten times less computation and generating 28% more efficient trajectories.

Jianchao Ci, Xin Wang, David Rapado-Rincón et al.

Greenhouse production of fruits and vegetables in developed countries is challenged by labor 12 scarcity and high labor costs. Robots offer a good solution for sustainable and cost-effective 13 production. Acquiring accurate spatial information about relevant plant parts is vital for 14 successful robot operation. Robot perception in greenhouses is challenging due to variations in 15 plant appearance, viewpoints, and illumination. This paper proposes a keypoint-detection-based 16 method using data from an RGB-D camera to estimate the 3D pose of peduncle nodes, which 17 provides essential information to harvest the tomato bunches. 18 19 Specifically, this paper proposes a method that detects four anatomical landmarks in the color 20 image and then integrates 3D point-cloud information to determine the 3D pose. A 21 comprehensive evaluation was conducted in a commercial greenhouse to gain insight into the 22 performance of different parts of the method. The results showed: (1) high accuracy in object 23 detection, achieving an Average Precision (AP) of AP@0.5=0.96; (2) an average Percentage of 24 Detected Joints (PDJ) of the keypoints of PhDJ@0.2=94.31%; and (3) 3D pose estimation 25 accuracy with mean absolute errors (MAE) of 11.38o and 9.93o for the relative upper and lower 26 angles between the peduncle and main stem, respectively. Furthermore, the capability to handle 27 variations in viewpoint was investigated, demonstrating the method was robust to view changes. 28 However, canonical and higher views resulted in slightly higher performance compared to other 29 views. Although tomato was selected as a use case, the proposed method is also applicable to 30 other greenhouse crops like pepper.

Rick van Essen, Eldert van Henten, Lammert Kooistra et al.

This paper presents an adaptive path planner for object search in agricultural fields using UAVs. The path planner uses a high-altitude coverage flight path and plans additional low-altitude inspections when the detection network is uncertain. The path planner was evaluated in an offline simulation environment containing real-world images. We trained a YOLOv8 detection network to detect artificial plants placed in grass fields to showcase the potential of our path planner. We evaluated the effect of different detection certainty measures, optimized the path planning parameters, investigated the effects of localization errors, and different numbers of objects in the field. The YOLOv8 detection confidence worked best to differentiate between true and false positive detections and was therefore used in the adaptive planner. The optimal parameters of the path planner depended on the distribution of objects in the field. When the objects were uniformly distributed, more low-altitude inspections were needed compared to a non-uniform distribution of objects, resulting in a longer path length. The adaptive planner proved to be robust against localization uncertainty. When increasing the number of objects, the flight path length increased, especially when the objects were uniformly distributed. When the objects were non-uniformly distributed, the adaptive path planner yielded a shorter path than a low-altitude coverage path, even with a high number of objects. Overall, the presented adaptive path planner allowed finding non-uniformly distributed objects in a field faster than a coverage path planner and resulted in a compatible detection accuracy. The path planner is made available at https://github.com/wur-abe/uav_adaptive_planner.

Robert van de Ven, Trim Bresilla, Bram Nelissen et al.

Automating tasks in orchards is challenging because of the large amount of variation in the environment and occlusions. One of the challenges is apple pose estimation, where key points, such as the calyx, are often occluded. Recently developed pose estimation methods no longer rely on these key points, but still require them for annotations, making annotating challenging and time-consuming. Due to the abovementioned occlusions, there can be conflicting and missing annotations of the same fruit between different images. Novel 3D reconstruction methods can be used to simplify annotating and enlarge datasets. We propose a novel pipeline consisting of 3D Gaussian Splatting to reconstruct an orchard scene, simplified annotations, automated projection of the annotations to images, and the training and evaluation of a pose estimation method. Using our pipeline, 105 manual annotations were required to obtain 28,191 training labels, a reduction of 99.6%. Experimental results indicated that training with labels of fruits that are $\leq95\%$ occluded resulted in the best performance, with a neutral F1 score of 0.927 on the original images and 0.970 on the rendered images. Adjusting the size of the training dataset had small effects on the model performance in terms of F1 score and pose estimation accuracy. It was found that the least occluded fruits had the best position estimation, which worsened as the fruits became more occluded. It was also found that the tested pose estimation method was unable to correctly learn the orientation estimation of apples.

Mirko Usuelli, David Rapado-Rincon, Gert Kootstra et al.

Autonomous robots in orchards require real-time 3D scene understanding despite repetitive row geometry, seasonal appearance changes, and wind-driven foliage motion. We present AgriGS-SLAM, a Visual--LiDAR SLAM framework that couples direct LiDAR odometry and loop closures with multi-camera 3D Gaussian Splatting (3DGS) rendering. Batch rasterization across complementary viewpoints recovers orchard structure under occlusions, while a unified gradient-driven map lifecycle executed between keyframes preserves fine details and bounds memory. Pose refinement is guided by a probabilistic LiDAR-based depth consistency term, back-propagated through the camera projection to tighten geometry-appearance coupling. We deploy the system on a field platform in apple and pear orchards across dormancy, flowering, and harvesting, using a standardized trajectory protocol that evaluates both training-view and novel-view synthesis to reduce 3DGS overfitting in evaluation. Across seasons and sites, AgriGS-SLAM delivers sharper, more stable reconstructions and steadier trajectories than recent state-of-the-art 3DGS-SLAM baselines while maintaining real-time performance on-tractor. While demonstrated in orchard monitoring, the approach can be applied to other outdoor domains requiring robust multimodal perception.

Pieter M. Blok, Gert Kootstra, Hakim Elchaoui Elghor et al.

The generalisation performance of a convolutional neural network (CNN) is influenced by the quantity, quality, and variety of the training images. Training images must be annotated, and this is time consuming and expensive. The goal of our work was to reduce the number of annotated images needed to train a CNN while maintaining its performance. We hypothesised that the performance of a CNN can be improved faster by ensuring that the set of training images contains a large fraction of hard-to-classify images. The objective of our study was to test this hypothesis with an active learning method that can automatically select the hard-to-classify images. We developed an active learning method for Mask Region-based CNN (Mask R-CNN) and named this method MaskAL. MaskAL involved the iterative training of Mask R-CNN, after which the trained model was used to select a set of unlabelled images about which the model was most uncertain. The selected images were then annotated and used to retrain Mask R-CNN, and this was repeated for a number of sampling iterations. In our study, MaskAL was compared to a random sampling method on a broccoli dataset with five visually similar classes. MaskAL performed significantly better than the random sampling. In addition, MaskAL had the same performance after sampling 900 images as the random sampling had after 2300 images. Compared to a Mask R-CNN model that was trained on the entire training set (14,000 images), MaskAL achieved 93.9% of that model's performance with 17.9% of its training data. The random sampling achieved 81.9% of that model's performance with 16.4% of its training data. We conclude that by using MaskAL, the annotation effort can be reduced for training Mask R-CNN on a broccoli dataset with visually similar classes. Our software is available on https://github.com/pieterblok/maskal.

Helena Russello, Rik van der Tol, Menno Holzhauer et al.

This study presents an automated lameness detection system that uses deep-learning image processing techniques to extract multiple locomotion traits associated with lameness. Using the T-LEAP pose estimation model, the motion of nine keypoints was extracted from videos of walking cows. The videos were recorded outdoors, with varying illumination conditions, and T-LEAP extracted 99.6% of correct keypoints. The trajectories of the keypoints were then used to compute six locomotion traits: back posture measurement, head bobbing, tracking distance, stride length, stance duration, and swing duration. The three most important traits were back posture measurement, head bobbing, and tracking distance. For the ground truth, we showed that a thoughtful merging of the scores of the observers could improve intra-observer reliability and agreement. We showed that including multiple locomotion traits improves the classification accuracy from 76.6% with only one trait to 79.9% with the three most important traits and to 80.1% with all six locomotion traits.

Helena Russello, Rik van der Tol, Eldert J. van Henten et al.

This study presents a lameness detection approach that combines pose estimation and Bidirectional Long-Short-Term Memory (BLSTM) neural networks. Combining pose-estimation and BLSTMs classifier offers the following advantages: markerless pose-estimation, elimination of manual feature engineering by learning temporal motion features from the keypoint trajectories, and working with short sequences and small training datasets. Motion sequences of nine keypoints (located on the cows' hooves, head and back) were extracted from videos of walking cows with the T-LEAP pose estimation model. The trajectories of the keypoints were then used as an input to a BLSTM classifier that was trained to perform binary lameness classification. Our method significantly outperformed an established method that relied on manually-designed locomotion features: our best architecture achieved a classification accuracy of 85%, against 80% accuracy for the feature-based approach. Furthermore, we showed that our BLSTM classifier could detect lameness with as little as one second of video data.

Helena Russello, Rik van der Tol, Gert Kootstra

As herd size on dairy farms continues to increase, automatic health monitoring of cows is gaining in interest. Lameness, a prevalent health disorder in dairy cows, is commonly detected by analyzing the gait of cows. A cow's gait can be tracked in videos using pose estimation models because models learn to automatically localize anatomical landmarks in images and videos. Most animal pose estimation models are static, that is, videos are processed frame by frame and do not use any temporal information. In this work, a static deep-learning model for animal-pose-estimation was extended to a temporal model that includes information from past frames. We compared the performance of the static and temporal pose estimation models. The data consisted of 1059 samples of 4 consecutive frames extracted from videos (30 fps) of 30 different dairy cows walking through an outdoor passageway. As farm environments are prone to occlusions, we tested the robustness of the static and temporal models by adding artificial occlusions to the videos.The experiments showed that, on non-occluded data, both static and temporal approaches achieved a Percentage of Correct Keypoints (PCKh@0.2) of 99%. On occluded data, our temporal approach outperformed the static one by up to 32.9%, suggesting that using temporal data was beneficial for pose estimation in environments prone to occlusions, such as dairy farms. The generalization capabilities of the temporal model was evaluated by testing it on data containing unknown cows (cows not present in the training set). The results showed that the average PCKh@0.2 was of 93.8% on known cows and 87.6% on unknown cows, indicating that the model was capable of generalizing well to new cows and that they could be easily fine-tuned to new herds. Finally, we showed that with harder tasks, such as occlusions and unknown cows, a deeper architecture was more beneficial.