Mahmood Alzubaidi

Ines Abbes, Mahmood Alzubaidi, Mowafa Househ et al.

Measurement-critical ultrasound tasks often depend on a small anatomical region, making global reconstruction metrics an unreliable proxy for clinical fidelity. We propose an ROI-aware representation learning framework and instantiate it for first-trimester nuchal translucency (NT) screening under multi-hospital domain shift. A two-phase convolutional autoencoder (CAE) first learns a globally faithful 128-D latent code via MS-SSIM, then refines the NT ROI using intensity (L1) and normalized Sobel-edge constraints. To combine these heterogeneous objectives without manual tuning, we initialize loss weights via gradient-based calibration from per-term gradient magnitudes. Under strict hospital-wise evaluation with one hospital held out, ROI refinement improves both global and measurement-relevant quality: on the standard dev split it increases PSNR by +0.27 dB (val) and +0.29 dB (held-out test), reduces ROI MAE by 8.87% (val) and 6.43% (held-out test), and reduces ROI Edge-MAE by 11.10% on source hospitals and 4.90% on the unseen hospital. Beyond reconstruction, frozen-latent probes provide additional evidence of generalization: hospital provenance becomes less confidently predictable on the unseen site (0.556 to 0.541 max-softmax; 0.684 to 0.688 entropy) while OOD detection remains strong across site-held-out protocols (Mahalanobis AUROC up to 0.9956, with modest KNN gains in challenging splits). The same ROI-aware refinement principle is anatomy-agnostic and can be adopted for other fetal biometry targets (e.g., crown-rump length (CRL), nasal bone (NB)) and broader medical imaging settings where small ROIs dominate clinical decisions.

Uzair Shah, Marco Agus, Daniya Boges et al.

We present SAM4EM, a novel approach for 3D segmentation of complex neural structures in electron microscopy (EM) data by leveraging the Segment Anything Model (SAM) alongside advanced fine-tuning strategies. Our contributions include the development of a prompt-free adapter for SAM using two stage mask decoding to automatically generate prompt embeddings, a dual-stage fine-tuning method based on Low-Rank Adaptation (LoRA) for enhancing segmentation with limited annotated data, and a 3D memory attention mechanism to ensure segmentation consistency across 3D stacks. We further release a unique benchmark dataset for the segmentation of astrocytic processes and synapses. We evaluated our method on challenging neuroscience segmentation benchmarks, specifically targeting mitochondria, glia, and synapses, with significant accuracy improvements over state-of-the-art (SOTA) methods, including recent SAM-based adapters developed for the medical domain and other vision transformer-based approaches. Experimental results indicate that our approach outperforms existing solutions in the segmentation of complex processes like glia and post-synaptic densities. Our code and models are available at https://github.com/Uzshah/SAM4EM.

Mahmood Alzubaidi, Marco Agus, Khalid Alyafei et al.

Developing innovative informatics approaches aimed to enhance fetal monitoring is a burgeoning field of study in reproductive medicine. Several reviews have been conducted regarding Artificial intelligence (AI) techniques to improve pregnancy outcomes. They are limited by focusing on specific data such as mother's care during pregnancy. This systematic survey aims to explore how artificial intelligence (AI) can assist with fetal growth monitoring via Ultrasound (US) image. We used eight medical and computer science bibliographic databases, including PubMed, Embase, PsycINFO, ScienceDirect, IEEE explore, ACM Library, Google Scholar, and the Web of Science. We retrieved studies published between 2010 to 2021. Data extracted from studies were synthesized using a narrative approach. Out of 1269 retrieved studies, we included 107 distinct studies from queries that were relevant to the topic in the survey. We found that 2D ultrasound images were more popular (n=88) than 3D and 4D ultrasound images (n=19). Classification is the most used method (n=42), followed by segmentation (n=31), classification integrated with segmentation (n=16) and other miscellaneous such as object-detection, regression and reinforcement learning (n=18). The most common areas within the pregnancy domain were the fetus head (n=43), then fetus body (n=31), fetus heart (n=13), fetus abdomen (n=10), and lastly the fetus face (n=10). In the most recent studies, deep learning techniques were primarily used (n=81), followed by machine learning (n=16), artificial neural network (n=7), and reinforcement learning (n=2). AI techniques played a crucial role in predicting fetal diseases and identifying fetus anatomy structures during pregnancy. More research is required to validate this technology from a physician's perspective, such as pilot studies and randomized controlled trials on AI and its applications in a hospital setting.