Chao Zhao

Chao Zhao, Min Zhao, Yi Guan

Hypernym identification of open-domain entities is crucial for taxonomy construction as well as many higher-level applications. Current methods suffer from either low precision or low recall. To decrease the difficulty of this problem, we adopt a classification-based method. We pre-define a concept taxonomy and classify an entity to one of its leaf concept, based on the name and description information of the entity. A convolutional neural network classifier and a K-means clustering module are adopted for classification. We applied this system to 2.1 million Baidu Baike entities, and 1.1 million of them were successfully identified with a precision of 99.36%.

Chao Zhao, Min Zhao, Yi Guan

The interests of individual internet users fall into a hierarchical structure which is useful in regards to building personalized searches and recommendations. Most studies on this subject construct the interest hierarchy of a single person from the document perspective. In this study, we constructed the user interest hierarchy via user profiles. We organized 433,397 user interests, referred to here as "attentions", into a user attention network (UAN) from 200 million user profiles; we then applied the Louvain algorithm to detect hierarchical clusters in these attentions. Finally, a 26-level hierarchy with 34,676 clusters was obtained. We found that these attention clusters were aggregated according to certain topics as opposed to the hyponymy-relation based conceptual ontologies. The topics can be entities or concepts, and the relations were not restrained by hyponymy. The concept relativity encapsulated in the user's interest can be captured by labeling the attention clusters with corresponding concepts.

Chao Zhao, Jingchi Jiang, Yi Guan

Objective: Electronic medical records (EMRs) contain an amount of medical knowledge which can be used for clinical decision support (CDS). Our objective is a general system that can extract and represent these knowledge contained in EMRs to support three CDS tasks: test recommendation, initial diagnosis, and treatment plan recommendation, with the given condition of one patient. Methods: We extracted four kinds of medical entities from records and constructed an EMR-based medical knowledge network (EMKN), in which nodes are entities and edges reflect their co-occurrence in a single record. Three bipartite subgraphs (bi-graphs) were extracted from the EMKN to support each task. One part of the bi-graph was the given condition (e.g., symptoms), and the other was the condition to be inferred (e.g., diseases). Each bi-graph was regarded as a Markov random field to support the inference. Three lazy energy functions and one parameter-based energy function were proposed, as well as two knowledge representation learning-based energy functions, which can provide a distributed representation of medical entities. Three measures were utilized for performance evaluation. Results: On the initial diagnosis task, 80.11% of the test records identified at least one correct disease from top 10 candidates. Test and treatment recommendation results were 87.88% and 92.55%, respectively. These results altogether indicate that the proposed system outperformed the baseline methods. The distributed representation of medical entities does reflect similarity relationships in regards to knowledge level. Conclusion: Combining EMKN and MRF is an effective approach for general medical knowledge representation and inference. Different tasks, however, require designing their energy functions individually.

Zhipeng Jiang, Chao Zhao, Bin He et al.

The CEGS N-GRID 2016 Shared Task 1 in Clinical Natural Language Processing focuses on the de-identification of psychiatric evaluation records. This paper describes two participating systems of our team, based on conditional random fields (CRFs) and long short-term memory networks (LSTMs). A pre-processing module was introduced for sentence detection and tokenization before de-identification. For CRFs, manually extracted rich features were utilized to train the model. For LSTMs, a character-level bi-directional LSTM network was applied to represent tokens and classify tags for each token, following which a decoding layer was stacked to decode the most probable protected health information (PHI) terms. The LSTM-based system attained an i2b2 strict micro-F_1 measure of 89.86%, which was higher than that of the CRF-based system.

Jingchi Jiang, Chao Zhao, Yi Guan et al.

Based on a weighted knowledge graph to represent first-order knowledge and combining it with a probabilistic model, we propose a methodology for the creation of a medical knowledge network (MKN) in medical diagnosis. When a set of symptoms is activated for a specific patient, we can generate a ground medical knowledge network composed of symptom nodes and potential disease nodes. By Incorporating a Boltzmann machine into the potential function of a Markov network, we investigated the joint probability distribution of the MKN. In order to deal with numerical symptoms, a multivariate inference model is presented that uses conditional probability. In addition, the weights for the knowledge graph were efficiently learned from manually annotated Chinese Electronic Medical Records (CEMRs). In our experiments, we found numerically that the optimum choice of the quality of disease node and the expression of symptom variable can improve the effectiveness of medical diagnosis. Our experimental results comparing a Markov logic network and the logistic regression algorithm on an actual CEMR database indicate that our method holds promise and that MKN can facilitate studies of intelligent diagnosis.