IVSep 29, 2022Code
R2C-GAN: Restore-to-Classify Generative Adversarial Networks for Blind X-Ray Restoration and COVID-19 ClassificationMete Ahishali, Aysen Degerli, Serkan Kiranyaz et al.
Restoration of poor quality images with a blended set of artifacts plays a vital role for a reliable diagnosis. Existing studies have focused on specific restoration problems such as image deblurring, denoising, and exposure correction where there is usually a strong assumption on the artifact type and severity. As a pioneer study in blind X-ray restoration, we propose a joint model for generic image restoration and classification: Restore-to-Classify Generative Adversarial Networks (R2C-GANs). Such a jointly optimized model keeps any disease intact after the restoration. Therefore, this will naturally lead to a higher diagnosis performance thanks to the improved X-ray image quality. To accomplish this crucial objective, we define the restoration task as an Image-to-Image translation problem from poor quality having noisy, blurry, or over/under-exposed images to high quality image domain. The proposed R2C-GAN model is able to learn forward and inverse transforms between the two domains using unpaired training samples. Simultaneously, the joint classification preserves the disease label during restoration. Moreover, the R2C-GANs are equipped with operational layers/neurons reducing the network depth and further boosting both restoration and classification performances. The proposed joint model is extensively evaluated over the QaTa-COV19 dataset for Coronavirus Disease 2019 (COVID-19) classification. The proposed restoration approach achieves over 90% F1-Score which is significantly higher than the performance of any deep model. Moreover, in the qualitative analysis, the restoration performance of R2C-GANs is approved by a group of medical doctors. We share the software implementation at https://github.com/meteahishali/R2C-GAN.
CVJul 12, 2023Code
Operational Support Estimator NetworksMete Ahishali, Mehmet Yamac, Serkan Kiranyaz et al.
In this work, we propose a novel approach called Operational Support Estimator Networks (OSENs) for the support estimation task. Support Estimation (SE) is defined as finding the locations of non-zero elements in sparse signals. By its very nature, the mapping between the measurement and sparse signal is a non-linear operation. Traditional support estimators rely on computationally expensive iterative signal recovery techniques to achieve such non-linearity. Contrary to the convolutional layers, the proposed OSEN approach consists of operational layers that can learn such complex non-linearities without the need for deep networks. In this way, the performance of non-iterative support estimation is greatly improved. Moreover, the operational layers comprise so-called generative super neurons with non-local kernels. The kernel location for each neuron/feature map is optimized jointly for the SE task during training. We evaluate the OSENs in three different applications: i. support estimation from Compressive Sensing (CS) measurements, ii. representation-based classification, and iii. learning-aided CS reconstruction where the output of OSENs is used as prior knowledge to the CS algorithm for enhanced reconstruction. Experimental results show that the proposed approach achieves computational efficiency and outperforms competing methods, especially at low measurement rates by significant margins. The software implementation is shared at https://github.com/meteahishali/OSEN.
4.6CVJun 1
Cross-Domain Dead Tree Detection via Knowledge Distillation in Aerial ImageryAnis Ur Rahman, Mete Ahishali, Einari Heinaro et al.
Detecting dead trees in aerial imagery is vital for assessing forest health, especially as tree mortality increases globally due to climate change, but domain variability and scarce labeled data often limit model generalization. This study advances the TreeMort-1T-UNet (Tree Mortality 1-Task U-Net) model, initially trained on Finnish aerial imagery (source domain), by applying knowledge distillation (KD) to adapt it to various target domains, including Polish, German, and Estonian datasets representing diverse forest types. We assess four KD variants: Basic, Self, Feature-level, and Ensemble, against a fine-tuning baseline, using Mean Tree IoU, Instance F1-score, Instance Precision, and Mean Centroid Error as key metrics, alongside representational analyses (e.g., cosine similarity, CKA, SSIM, t-SNE, and linear probing) for domain invariance. Feature-level KD outperforms others, yielding a Mean Tree IoU of 0.106, Instance F1-score of 0.63, Instance Precision of 0.55, and Mean Centroid Error of 3.039 on the Polish dataset, with robust precision across other target domains (e.g., 0.15 on Finnish, 0.67 on Polish, 0.60 on German, 0.59 on Estonian). It excels in low-data scenarios with fewer false positives and shows superior representational invariance (e.g., higher deep-layer CKA/SSIM, better domain mixing in t-SNE, and linear probing AUC of 0.95), making it ideal for precision-critical forestry applications. Additional ablation studies confirm that key components like feature alignment enhance its performance balance across metrics. Our findings demonstrate KD's potential to enhance transfer learning in remote sensing, offering a scalable, domain-robust tool for ecological monitoring and sustainable forest management.
IVMar 18, 2021
Advance Warning Methodologies for COVID-19 using Chest X-Ray ImagesMete Ahishali, Aysen Degerli, Mehmet Yamac et al.
Coronavirus disease 2019 (COVID-19) has rapidly become a global health concern after its first known detection in December 2019. As a result, accurate and reliable advance warning system for the early diagnosis of COVID-19 has now become a priority. The detection of COVID-19 in early stages is not a straightforward task from chest X-ray images according to expert medical doctors because the traces of the infection are visible only when the disease has progressed to a moderate or severe stage. In this study, our first aim is to evaluate the ability of recent \textit{state-of-the-art} Machine Learning techniques for the early detection of COVID-19 from chest X-ray images. Both compact classifiers and deep learning approaches are considered in this study. Furthermore, we propose a recent compact classifier, Convolutional Support Estimator Network (CSEN) approach for this purpose since it is well-suited for a scarce-data classification task. Finally, this study introduces a new benchmark dataset called Early-QaTa-COV19, which consists of 1065 early-stage COVID-19 pneumonia samples (very limited or no infection signs) labelled by the medical doctors and 12 544 samples for control (normal) class. A detailed set of experiments shows that the CSEN achieves the top (over 97%) sensitivity with over 95.5% specificity. Moreover, DenseNet-121 network produces the leading performance among other deep networks with 95% sensitivity and 99.74% specificity.
LGSep 27, 2023
SAF-Net: Self-Attention Fusion Network for Myocardial Infarction Detection using Multi-View EchocardiographyIlke Adalioglu, Mete Ahishali, Aysen Degerli et al.
Myocardial infarction (MI) is a severe case of coronary artery disease (CAD) and ultimately, its detection is substantial to prevent progressive damage to the myocardium. In this study, we propose a novel view-fusion model named self-attention fusion network (SAF-Net) to detect MI from multi-view echocardiography recordings. The proposed framework utilizes apical 2-chamber (A2C) and apical 4-chamber (A4C) view echocardiography recordings for classification. Three reference frames are extracted from each recording of both views and deployed pre-trained deep networks to extract highly representative features. The SAF-Net model utilizes a self-attention mechanism to learn dependencies in extracted feature vectors. The proposed model is computationally efficient thanks to its compact architecture having three main parts: a feature embedding to reduce dimensionality, self-attention for view-pooling, and dense layers for the classification. Experimental evaluation is performed using the HMC-QU-TAU dataset which consists of 160 patients with A2C and A4C view echocardiography recordings. The proposed SAF-Net model achieves a high-performance level with 88.26% precision, 77.64% sensitivity, and 78.13% accuracy. The results demonstrate that the SAF-Net model achieves the most accurate MI detection over multi-view echocardiography recordings.
CVApr 19, 2023
Hyperspectral Image Analysis with Subspace Learning-based One-Class ClassificationSertac Kilickaya, Mete Ahishali, Fahad Sohrab et al.
Hyperspectral image (HSI) classification is an important task in many applications, such as environmental monitoring, medical imaging, and land use/land cover (LULC) classification. Due to the significant amount of spectral information from recent HSI sensors, analyzing the acquired images is challenging using traditional Machine Learning (ML) methods. As the number of frequency bands increases, the required number of training samples increases exponentially to achieve a reasonable classification accuracy, also known as the curse of dimensionality. Therefore, separate band selection or dimensionality reduction techniques are often applied before performing any classification task over HSI data. In this study, we investigate recently proposed subspace learning methods for one-class classification (OCC). These methods map high-dimensional data to a lower-dimensional feature space that is optimized for one-class classification. In this way, there is no separate dimensionality reduction or feature selection procedure needed in the proposed classification framework. Moreover, one-class classifiers have the ability to learn a data description from the category of a single class only. Considering the imbalanced labels of the LULC classification problem and rich spectral information (high number of dimensions), the proposed classification approach is well-suited for HSI data. Overall, this is a pioneer study focusing on subspace learning-based one-class classification for HSI data. We analyze the performance of the proposed subspace learning one-class classifiers in the proposed pipeline. Our experiments validate that the proposed approach helps tackle the curse of dimensionality along with the imbalanced nature of HSI data.
CVApr 19, 2023
Improved Active Fire Detection using Operational U-NetsOzer Can Devecioglu, Mete Ahishali, Fahad Sohrab et al.
As a consequence of global warming and climate change, the risk and extent of wildfires have been increasing in many areas worldwide. Warmer temperatures and drier conditions can cause quickly spreading fires and make them harder to control; therefore, early detection and accurate locating of active fires are crucial in environmental monitoring. Using satellite imagery to monitor and detect active fires has been critical for managing forests and public land. Many traditional statistical-based methods and more recent deep-learning techniques have been proposed for active fire detection. In this study, we propose a novel approach called Operational U-Nets for the improved early detection of active fires. The proposed approach utilizes Self-Organized Operational Neural Network (Self-ONN) layers in a compact U-Net architecture. The preliminary experimental results demonstrate that Operational U-Nets not only achieve superior detection performance but can also significantly reduce computational complexity.
CVApr 22, 2025Code
Multi-Scale Tensorial Summation and Dimensional Reduction Guided Neural Network for Edge DetectionLei Xu, Mehmet Yamac, Mete Ahishali et al.
Edge detection has attracted considerable attention thanks to its exceptional ability to enhance performance in downstream computer vision tasks. In recent years, various deep learning methods have been explored for edge detection tasks resulting in a significant performance improvement compared to conventional computer vision algorithms. In neural networks, edge detection tasks require considerably large receptive fields to provide satisfactory performance. In a typical convolutional operation, such a large receptive field can be achieved by utilizing a significant number of consecutive layers, which yields deep network structures. Recently, a Multi-scale Tensorial Summation (MTS) factorization operator was presented, which can achieve very large receptive fields even from the initial layers. In this paper, we propose a novel MTS Dimensional Reduction (MTS-DR) module guided neural network, MTS-DR-Net, for the edge detection task. The MTS-DR-Net uses MTS layers, and corresponding MTS-DR blocks as a new backbone to remove redundant information initially. Such a dimensional reduction module enables the neural network to focus specifically on relevant information (i.e., necessary subspaces). Finally, a weight U-shaped refinement module follows MTS-DR blocks in the MTS-DR-Net. We conducted extensive experiments on two benchmark edge detection datasets: BSDS500 and BIPEDv2 to verify the effectiveness of our model. The implementation of the proposed MTS-DR-Net can be found at https://github.com/LeiXuAI/MTS-DR-Net.git.
CVApr 5, 2025Code
ADA-Net: Attention-Guided Domain Adaptation Network with Contrastive Learning for Standing Dead Tree Segmentation Using Aerial ImageryMete Ahishali, Anis Ur Rahman, Einari Heinaro et al.
Information on standing dead trees is important for understanding forest ecosystem functioning and resilience but has been lacking over large geographic regions. Climate change has caused large-scale tree mortality events that can remain undetected due to limited data. In this study, we propose a novel method for segmenting standing dead trees using aerial multispectral orthoimages. Because access to annotated datasets has been a significant problem in forest remote sensing due to the need for forest expertise, we introduce a method for domain transfer by leveraging domain adaptation to learn a transformation from a source domain X to target domain Y. In this Image-to-Image translation task, we aim to utilize available annotations in the target domain by pre-training a segmentation network. When images from a new study site without annotations are introduced (source domain X), these images are transformed into the target domain. Then, transfer learning is applied by inferring the pre-trained network on domain-adapted images. In addition to investigating the feasibility of current domain adaptation approaches for this objective, we propose a novel approach called the Attention-guided Domain Adaptation Network (ADA-Net) with enhanced contrastive learning. Accordingly, the ADA-Net approach provides new state-of-the-art domain adaptation performance levels outperforming existing approaches. We have evaluated the proposed approach using two datasets from Finland and the US. The USA images are converted to the Finland domain, and we show that the synthetic USA2Finland dataset exhibits similar characteristics to the Finland domain images. The software implementation is shared at https://github.com/meteahishali/ADA-Net. The data is publicly available at https://www.kaggle.com/datasets/meteahishali/aerial-imagery-for-standing-dead-tree-segmentation.
CVFeb 20, 2022Code
SRL-SOA: Self-Representation Learning with Sparse 1D-Operational Autoencoder for Hyperspectral Image Band SelectionMete Ahishali, Serkan Kiranyaz, Iftikhar Ahmad et al.
The band selection in the hyperspectral image (HSI) data processing is an important task considering its effect on the computational complexity and accuracy. In this work, we propose a novel framework for the band selection problem: Self-Representation Learning (SRL) with Sparse 1D-Operational Autoencoder (SOA). The proposed SLR-SOA approach introduces a novel autoencoder model, SOA, that is designed to learn a representation domain where the data are sparsely represented. Moreover, the network composes of 1D-operational layers with the non-linear neuron model. Hence, the learning capability of neurons (filters) is greatly improved with shallow architectures. Using compact architectures is especially crucial in autoencoders as they tend to overfit easily because of their identity mapping objective. Overall, we show that the proposed SRL-SOA band selection approach outperforms the competing methods over two HSI data including Indian Pines and Salinas-A considering the achieved land cover classification accuracies. The software implementation of the SRL-SOA approach is shared publicly at https://github.com/meteahishali/SRL-SOA.
CVJun 27, 2021Code
Representation Based Regression for Object Distance EstimationMete Ahishali, Mehmet Yamac, Serkan Kiranyaz et al.
In this study, we propose a novel approach to predict the distances of the detected objects in an observed scene. The proposed approach modifies the recently proposed Convolutional Support Estimator Networks (CSENs). CSENs are designed to compute a direct mapping for the Support Estimation (SE) task in a representation-based classification problem. We further propose and demonstrate that representation-based methods (sparse or collaborative representation) can be used in well-designed regression problems. To the best of our knowledge, this is the first representation-based method proposed for performing a regression task by utilizing the modified CSENs; and hence, we name this novel approach as Representation-based Regression (RbR). The initial version of CSENs has a proxy mapping stage (i.e., a coarse estimation for the support set) that is required for the input. In this study, we improve the CSEN model by proposing Compressive Learning CSEN (CL-CSEN) that has the ability to jointly optimize the so-called proxy mapping stage along with convolutional layers. The experimental evaluations using the KITTI 3D Object Detection distance estimation dataset show that the proposed method can achieve a significantly improved distance estimation performance over all competing methods. Finally, the software implementations of the methods are publicly shared at https://github.com/meteahishali/CSENDistance.
5.3CVMay 4
Multispectral Blind Image Super-Resolution for Standing Dead Tree SegmentationMete Ahishali, Anis Ur Rahman, Einari Heinaro et al.
Mapping standing dead trees is crucial for acquiring information on the effects of climate change on forests and forest biodiversity. However, leveraging high-quality aerial imagery for dead tree segmentation poses challenges due to limitations in sensor availability and the scarcity of annotated data. In this study, we propose a generic blind super-resolution framework that incorporates Attention-Guided Domain Adaptation Networks (ADA-Nets) to learn the mapping from low-resolution to high-resolution multispectral image domains. Our approach operates solely on unpaired samples, mimicking real-world conditions, i.e., low-resolution images are not synthetically obtained by downsampling the high-resolution images. Moreover, the proposed method serves as a general-purpose restorer addressing several image degradation types, including saturation, noise, and low contrast that typically occur in low-resolution images acquired by low-end sensors. To the best of our knowledge, this is the first study to perform real-world and generic super-resolution for multispectral data in the scope of standing dead tree segmentation. Experimental evaluations demonstrate segmentation performances of 54% and 64% in Dice scores. Notably, the first result is obtained without using any high-resolution annotations; the segmentation network is trained on super-resolved low-resolution images, while evaluation is performed on the high-resolution data. We publicly share the aerial multispectral dataset with manually annotated labels at https://www.kaggle.com/datasets/meteahishali/aerial-imagery-for-dead-tree-segmentation-poland.
SDDec 14, 2024
Audio-based Anomaly Detection in Industrial Machines Using Deep One-Class Support Vector Data DescriptionSertac Kilickaya, Mete Ahishali, Cansu Celebioglu et al.
The frequent breakdowns and malfunctions of industrial equipment have driven increasing interest in utilizing cost-effective and easy-to-deploy sensors, such as microphones, for effective condition monitoring of machinery. Microphones offer a low-cost alternative to widely used condition monitoring sensors with their high bandwidth and capability to detect subtle anomalies that other sensors might have less sensitivity. In this study, we investigate malfunctioning industrial machines to evaluate and compare anomaly detection performance across different machine types and fault conditions. Log-Mel spectrograms of machinery sound are used as input, and the performance is evaluated using the area under the curve (AUC) score for two different methods: baseline dense autoencoder (AE) and one-class deep Support Vector Data Description (deep SVDD) with different subspace dimensions. Our results over the MIMII sound dataset demonstrate that the deep SVDD method with a subspace dimension of 2 provides superior anomaly detection performance, achieving average AUC scores of 0.84, 0.80, and 0.69 for 6 dB, 0 dB, and -6 dB signal-to-noise ratios (SNRs), respectively, compared to 0.82, 0.72, and 0.64 for the baseline model. Moreover, deep SVDD requires 7.4 times fewer trainable parameters than the baseline dense AE, emphasizing its advantage in both effectiveness and computational efficiency.
CVMar 27, 2025
Dual-Task Learning for Dead Tree Detection and Segmentation with Hybrid Self-Attention U-Nets in Aerial ImageryAnis Ur Rahman, Einari Heinaro, Mete Ahishali et al.
Mapping standing dead trees is critical for assessing forest health, monitoring biodiversity, and mitigating wildfire risks, for which aerial imagery has proven useful. However, dense canopy structures, spectral overlaps between living and dead vegetation, and over-segmentation errors limit the reliability of existing methods. This study introduces a hybrid postprocessing framework that refines deep learning-based tree segmentation by integrating watershed algorithms with adaptive filtering, enhancing boundary delineation, and reducing false positives in complex forest environments. Tested on high-resolution aerial imagery from boreal forests, the framework improved instance-level segmentation accuracy by 41.5% and reduced positional errors by 57%, demonstrating robust performance in densely vegetated regions. By balancing detection accuracy and over-segmentation artifacts, the method enabled the precise identification of individual dead trees, which is critical for ecological monitoring. The framework's computational efficiency supports scalable applications, such as wall-to-wall tree mortality mapping over large geographic regions using aerial or satellite imagery. These capabilities directly benefit wildfire risk assessment (identifying fuel accumulations), carbon stock estimation (tracking emissions from decaying biomass), and precision forestry (targeting salvage loggings). By bridging advanced remote sensing techniques with practical forest management needs, this work advances tools for large-scale ecological conservation and climate resilience planning.
IVDec 9, 2024
Echocardiography to Cardiac MRI View Transformation for Real-Time Blind RestorationIlke Adalioglu, Serkan Kiranyaz, Mete Ahishali et al.
Echocardiography is the most widely used imaging to monitor cardiac functions, serving as the first line in early detection of myocardial ischemia and infarction. However, echocardiography often suffers from several artifacts including sensor noise, lack of contrast, severe saturation, and missing myocardial segments which severely limit its usage in clinical diagnosis. In recent years, several machine learning methods have been proposed to improve echocardiography views. Yet, these methods usually address only a specific problem (e.g. denoising) and thus cannot provide a robust and reliable restoration in general. On the other hand, cardiac MRI provides a clean view of the heart without suffering such severe issues. However, due to its significantly higher cost, it is often only afforded by a few major hospitals, hence hindering its use and accessibility. In this pilot study, we propose a novel approach to transform echocardiography into the cardiac MRI view. For this purpose, Echo2MRI dataset, consisting of echocardiography and real cardiac MRI image pairs, is composed and will be shared publicly. A dedicated Cycle-consistent Generative Adversarial Network (Cycle-GAN) is trained to learn the transformation from echocardiography frames to cardiac MRI views. An extensive set of qualitative evaluations shows that the proposed transformer can synthesize high-quality artifact-free synthetic cardiac MRI views from a given sequence of echocardiography frames. Medical evaluations performed by a group of cardiologists further demonstrate that synthetic MRI views are indistinguishable from their original counterparts and are preferred over their initial sequence of echocardiography frames for diagnosis in 78.9% of the cases.
CVJan 29, 2024
Dropout Concrete Autoencoder for Band Selection on HSI ScenesLei Xu, Mete Ahishali, Moncef Gabbouj
Deep learning-based informative band selection methods on hyperspectral images (HSI) recently have gained intense attention to eliminate spectral correlation and redundancies. However, the existing deep learning-based methods either need additional post-processing strategies to select the descriptive bands or optimize the model indirectly, due to the parameterization inability of discrete variables for the selection procedure. To overcome these limitations, this work proposes a novel end-to-end network for informative band selection. The proposed network is inspired by the advances in concrete autoencoder (CAE) and dropout feature ranking strategy. Different from the traditional deep learning-based methods, the proposed network is trained directly given the required band subset eliminating the need for further post-processing. Experimental results on four HSI scenes show that the proposed dropout CAE achieves substantial and effective performance levels outperforming the competing methods.
IVJan 28, 2021
Reliable COVID-19 Detection Using Chest X-ray ImagesAysen Degerli, Mete Ahishali, Serkan Kiranyaz et al.
Coronavirus disease 2019 (COVID-19) has emerged the need for computer-aided diagnosis with automatic, accurate, and fast algorithms. Recent studies have applied Machine Learning algorithms for COVID-19 diagnosis over chest X-ray (CXR) images. However, the data scarcity in these studies prevents a reliable evaluation with the potential of overfitting and limits the performance of deep networks. Moreover, these networks can discriminate COVID-19 pneumonia usually from healthy subjects only or occasionally, from limited pneumonia types. Thus, there is a need for a robust and accurate COVID-19 detector evaluated over a large CXR dataset. To address this need, in this study, we propose a reliable COVID-19 detection network: ReCovNet, which can discriminate COVID-19 pneumonia from 14 different thoracic diseases and healthy subjects. To accomplish this, we have compiled the largest COVID-19 CXR dataset: QaTa-COV19 with 124,616 images including 4603 COVID-19 samples. The proposed ReCovNet achieved a detection performance with 98.57% sensitivity and 99.77% specificity.
CVNov 10, 2020
Classification of Polarimetric SAR Images Using Compact Convolutional Neural NetworksMete Ahishali, Serkan Kiranyaz, Turker Ince et al.
Classification of polarimetric synthetic aperture radar (PolSAR) images is an active research area with a major role in environmental applications. The traditional Machine Learning (ML) methods proposed in this domain generally focus on utilizing highly discriminative features to improve the classification performance, but this task is complicated by the well-known "curse of dimensionality" phenomena. Other approaches based on deep Convolutional Neural Networks (CNNs) have certain limitations and drawbacks, such as high computational complexity, an unfeasibly large training set with ground-truth labels, and special hardware requirements. In this work, to address the limitations of traditional ML and deep CNN based methods, a novel and systematic classification framework is proposed for the classification of PolSAR images, based on a compact and adaptive implementation of CNNs using a sliding-window classification approach. The proposed approach has three advantages. First, there is no requirement for an extensive feature extraction process. Second, it is computationally efficient due to utilized compact configurations. In particular, the proposed compact and adaptive CNN model is designed to achieve the maximum classification accuracy with minimum training and computational complexity. This is of considerable importance considering the high costs involved in labelling in PolSAR classification. Finally, the proposed approach can perform classification using smaller window sizes than deep CNNs. Experimental evaluations have been performed over the most commonly-used four benchmark PolSAR images: AIRSAR L-Band and RADARSAT-2 C-Band data of San Francisco Bay and Flevoland areas. Accordingly, the best obtained overall accuracies range between 92.33 - 99.39% for these benchmark study sites.
IVSep 26, 2020
COVID-19 Infection Map Generation and Detection from Chest X-Ray ImagesAysen Degerli, Mete Ahishali, Mehmet Yamac et al.
Computer-aided diagnosis has become a necessity for accurate and immediate coronavirus disease 2019 (COVID-19) detection to aid treatment and prevent the spread of the virus. Numerous studies have proposed to use Deep Learning techniques for COVID-19 diagnosis. However, they have used very limited chest X-ray (CXR) image repositories for evaluation with a small number, a few hundreds, of COVID-19 samples. Moreover, these methods can neither localize nor grade the severity of COVID-19 infection. For this purpose, recent studies proposed to explore the activation maps of deep networks. However, they remain inaccurate for localizing the actual infestation making them unreliable for clinical use. This study proposes a novel method for the joint localization, severity grading, and detection of COVID-19 from CXR images by generating the so-called infection maps. To accomplish this, we have compiled the largest dataset with 119,316 CXR images including 2951 COVID-19 samples, where the annotation of the ground-truth segmentation masks is performed on CXRs by a novel collaborative human-machine approach. Furthermore, we publicly release the first CXR dataset with the ground-truth segmentation masks of the COVID-19 infected regions. A detailed set of experiments show that state-of-the-art segmentation networks can learn to localize COVID-19 infection with an F1-score of 83.20%, which is significantly superior to the activation maps created by the previous methods. Finally, the proposed approach achieved a COVID-19 detection performance with 94.96% sensitivity and 99.88% specificity.
IVJun 7, 2020
Advance Warning Methodologies for COVID-19 using Chest X-Ray ImagesMete Ahishali, Aysen Degerli, Mehmet Yamac et al.
Coronavirus disease 2019 (COVID-19) has rapidly become a global health concern after its first known detection in December 2019. As a result, accurate and reliable advance warning system for the early diagnosis of COVID-19 has now become a priority. The detection of COVID-19 in early stages is not a straightforward task from chest X-ray images according to expert medical doctors because the traces of the infection are visible only when the disease has progressed to a moderate or severe stage. In this study, our first aim is to evaluate the ability of recent \textit{state-of-the-art} Machine Learning techniques for the early detection of COVID-19 from chest X-ray images. Both compact classifiers and deep learning approaches are considered in this study. Furthermore, we propose a recent compact classifier, Convolutional Support Estimator Network (CSEN) approach for this purpose since it is well-suited for a scarce-data classification task. Finally, this study introduces a new benchmark dataset called Early-QaTa-COV19, which consists of 1065 early-stage COVID-19 pneumonia samples (very limited or no infection signs) labelled by the medical doctors and 12 544 samples for control (normal) class. A detailed set of experiments shows that the CSEN achieves the top (over 97%) sensitivity with over 95.5% specificity. Moreover, DenseNet-121 network produces the leading performance among other deep networks with 95% sensitivity and 99.74% specificity.
IVMay 8, 2020
Convolutional Sparse Support Estimator Based Covid-19 Recognition from X-ray ImagesMehmet Yamac, Mete Ahishali, Aysen Degerli et al.
Coronavirus disease (Covid-19) has been the main agenda of the whole world since it came in sight in December 2019. It has already caused thousands of causalities and infected several millions worldwide. Any technological tool that can be provided to healthcare practitioners to save time, effort, and possibly lives has crucial importance. The main tools practitioners currently use to diagnose Covid-19 are Reverse Transcription-Polymerase Chain reaction (RT-PCR) and Computed Tomography (CT), which require significant time, resources and acknowledged experts. X-ray imaging is a common and easily accessible tool that has great potential for Covid-19 diagnosis. In this study, we propose a novel approach for Covid-19 recognition from chest X-ray images. Despite the importance of the problem, recent studies in this domain produced not so satisfactory results due to the limited datasets available for training. Recall that Deep Learning techniques can generally provide state-of-the-art performance in many classification tasks when trained properly over large datasets, such data scarcity can be a crucial obstacle when using them for Covid-19 detection. Alternative approaches such as representation-based classification (collaborative or sparse representation) might provide satisfactory performance with limited size datasets, but they generally fall short in performance or speed compared to Machine Learning methods. To address this deficiency, Convolution Support Estimation Network (CSEN) has recently been proposed as a bridge between model-based and Deep Learning approaches by providing a non-iterative real-time mapping from query sample to ideally sparse representation coefficient' support, which is critical information for class decision in representation based techniques.
SPMar 2, 2020
Convolutional Sparse Support Estimator Network (CSEN) From energy efficient support estimation to learning-aided Compressive SensingMehmet Yamac, Mete Ahishali, Serkan Kiranyaz et al.
Support estimation (SE) of a sparse signal refers to finding the location indices of the non-zero elements in a sparse representation. Most of the traditional approaches dealing with SE problem are iterative algorithms based on greedy methods or optimization techniques. Indeed, a vast majority of them use sparse signal recovery techniques to obtain support sets instead of directly mapping the non-zero locations from denser measurements (e.g., Compressively Sensed Measurements). This study proposes a novel approach for learning such a mapping from a training set. To accomplish this objective, the Convolutional Support Estimator Networks (CSENs), each with a compact configuration, are designed. The proposed CSEN can be a crucial tool for the following scenarios: (i) Real-time and low-cost support estimation can be applied in any mobile and low-power edge device for anomaly localization, simultaneous face recognition, etc. (ii) CSEN's output can directly be used as "prior information" which improves the performance of sparse signal recovery algorithms. The results over the benchmark datasets show that state-of-the-art performance levels can be achieved by the proposed approach with a significantly reduced computational complexity.
CRJun 20, 2019
Reversible Privacy Preservation using Multi-level Encryption and Compressive SensingMehmet Yamac, Mete Ahishali, Nikolaos Passalis et al.
Security monitoring via ubiquitous cameras and their more extended in intelligent buildings stand to gain from advances in signal processing and machine learning. While these innovative and ground-breaking applications can be considered as a boon, at the same time they raise significant privacy concerns. In fact, recent GDPR (General Data Protection Regulation) legislation has highlighted and become an incentive for privacy-preserving solutions. Typical privacy-preserving video monitoring schemes address these concerns by either anonymizing the sensitive data. However, these approaches suffer from some limitations, since they are usually non-reversible, do not provide multiple levels of decryption and computationally costly. In this paper, we provide a novel privacy-preserving method, which is reversible, supports de-identification at multiple privacy levels, and can efficiently perform data acquisition, encryption and data hiding by combining multi-level encryption with compressive sensing. The effectiveness of the proposed approach in protecting the identity of the users has been validated using the goodness of reconstruction quality and strong anonymization of the faces.