Johanna Carvajal

Teng Zhang, Johanna Carvajal, Daniel F. Smith et al.

This work tackles the automatic fine-grained slide quality assessment problem for digitized direct smears test using the Gram staining protocol. Automatic quality assessment can provide useful information for the pathologists and the whole digital pathology workflow. For instance, if the system found a slide to have a low staining quality, it could send a request to the automatic slide preparation system to remake the slide. If the system detects severe damage in the slides, it could notify the experts that manual microscope reading may be required. In order to address the quality assessment problem, we propose a deep neural network based framework to automatically assess the slide quality in a semantic way. Specifically, the first step of our framework is to perform dense fine-grained region classification on the whole slide and calculate the region distribution histogram. Next, our framework will generate assessments of the slide quality from various perspectives: staining quality, information density, damage level and which regions are more valuable for subsequent high-magnification analysis. To make the information more accessible, we present our results in the form of a heat map and text summaries. Additionally, in order to stimulate research in this direction, we propose a novel dataset for slide quality assessment. Experiments show that the proposed framework outperforms recent related works.

Johanna Carvajal, Chris McCool, Brian Lovell et al.

We propose a hierarchical approach to multi-action recognition that performs joint classification and segmentation. A given video (containing several consecutive actions) is processed via a sequence of overlapping temporal windows. Each frame in a temporal window is represented through selective low-level spatio-temporal features which efficiently capture relevant local dynamics. Features from each window are represented as a Fisher vector, which captures first and second order statistics. Instead of directly classifying each Fisher vector, it is converted into a vector of class probabilities. The final classification decision for each frame is then obtained by integrating the class probabilities at the frame level, which exploits the overlapping of the temporal windows. Experiments were performed on two datasets: s-KTH (a stitched version of the KTH dataset to simulate multi-actions), and the challenging CMU-MMAC dataset. On s-KTH, the proposed approach achieves an accuracy of 85.0%, significantly outperforming two recent approaches based on GMMs and HMMs which obtained 78.3% and 71.2%, respectively. On CMU-MMAC, the proposed approach achieves an accuracy of 40.9%, outperforming the GMM and HMM approaches which obtained 33.7% and 38.4%, respectively. Furthermore, the proposed system is on average 40 times faster than the GMM based approach.

Johanna Carvajal, Chris McCool, Conrad Sanderson

We present a novel approach to video summarisation that makes use of a Bag-of-visual-Textures (BoT) approach. Two systems are proposed, one based solely on the BoT approach and another which exploits both colour information and BoT features. On 50 short-term videos from the Open Video Project we show that our BoT and fusion systems both achieve state-of-the-art performance, obtaining an average F-measure of 0.83 and 0.86 respectively, a relative improvement of 9% and 13% when compared to the previous state-of-the-art. When applied to a new underwater surveillance dataset containing 33 long-term videos, the proposed system reduces the amount of footage by a factor of 27, with only minor degradation in the information content. This order of magnitude reduction in video data represents significant savings in terms of time and potential labour cost when manually reviewing such footage.