COSep 5, 2022
The SZ flux-mass ($Y$-$M$) relation at low halo masses: improvements with symbolic regression and strong constraints on baryonic feedbackDigvijay Wadekar, Leander Thiele, J. Colin Hill et al. · cambridge
Feedback from active galactic nuclei (AGN) and supernovae can affect measurements of integrated SZ flux of halos ($Y_\mathrm{SZ}$) from CMB surveys, and cause its relation with the halo mass ($Y_\mathrm{SZ}-M$) to deviate from the self-similar power-law prediction of the virial theorem. We perform a comprehensive study of such deviations using CAMELS, a suite of hydrodynamic simulations with extensive variations in feedback prescriptions. We use a combination of two machine learning tools (random forest and symbolic regression) to search for analogues of the $Y-M$ relation which are more robust to feedback processes for low masses ($M\lesssim 10^{14}\, h^{-1} \, M_\odot$); we find that simply replacing $Y\rightarrow Y(1+M_*/M_\mathrm{gas})$ in the relation makes it remarkably self-similar. This could serve as a robust multiwavelength mass proxy for low-mass clusters and galaxy groups. Our methodology can also be generally useful to improve the domain of validity of other astrophysical scaling relations. We also forecast that measurements of the $Y-M$ relation could provide percent-level constraints on certain combinations of feedback parameters and/or rule out a major part of the parameter space of supernova and AGN feedback models used in current state-of-the-art hydrodynamic simulations. Our results can be useful for using upcoming SZ surveys (e.g., SO, CMB-S4) and galaxy surveys (e.g., DESI and Rubin) to constrain the nature of baryonic feedback. Finally, we find that the an alternative relation, $Y-M_*$, provides complementary information on feedback than $Y-M$
AIOct 30, 2025Code
The Denario project: Deep knowledge AI agents for scientific discoveryFrancisco Villaescusa-Navarro, Boris Bolliet, Pablo Villanueva-Domingo et al.
We present Denario, an AI multi-agent system designed to serve as a scientific research assistant. Denario can perform many different tasks, such as generating ideas, checking the literature, developing research plans, writing and executing code, making plots, and drafting and reviewing a scientific paper. The system has a modular architecture, allowing it to handle specific tasks, such as generating an idea, or carrying out end-to-end scientific analysis using Cmbagent as a deep-research backend. In this work, we describe in detail Denario and its modules, and illustrate its capabilities by presenting multiple AI-generated papers generated by it in many different scientific disciplines such as astrophysics, biology, biophysics, biomedical informatics, chemistry, material science, mathematical physics, medicine, neuroscience and planetary science. Denario also excels at combining ideas from different disciplines, and we illustrate this by showing a paper that applies methods from quantum physics and machine learning to astrophysical data. We report the evaluations performed on these papers by domain experts, who provided both numerical scores and review-like feedback. We then highlight the strengths, weaknesses, and limitations of the current system. Finally, we discuss the ethical implications of AI-driven research and reflect on how such technology relates to the philosophy of science. We publicly release the code at https://github.com/AstroPilot-AI/Denario. A Denario demo can also be run directly on the web at https://huggingface.co/spaces/astropilot-ai/Denario, and the full app will be deployed on the cloud.
COJun 9, 2022
Field Level Neural Network Emulator for Cosmological N-body SimulationsDrew Jamieson, Yin Li, Renan Alves de Oliveira et al.
We build a field level emulator for cosmic structure formation that is accurate in the nonlinear regime. Our emulator consists of two convolutional neural networks trained to output the nonlinear displacements and velocities of N-body simulation particles based on their linear inputs. Cosmology dependence is encoded in the form of style parameters at each layer of the neural network, enabling the emulator to effectively interpolate the outcomes of structure formation between different flat $Λ$CDM cosmologies over a wide range of background matter densities. The neural network architecture makes the model differentiable by construction, providing a powerful tool for fast field level inference. We test the accuracy of our method by considering several summary statistics, including the density power spectrum with and without redshift space distortions, the displacement power spectrum, the momentum power spectrum, the density bispectrum, halo abundances, and halo profiles with and without redshift space distortions. We compare these statistics from our emulator with the full N-body results, the COLA method, and a fiducial neural network with no cosmological dependence. We find our emulator gives accurate results down to scales of $k \sim 1\ \mathrm{Mpc}^{-1}\, h$, representing a considerable improvement over both COLA and the fiducial neural network. We also demonstrate that our emulator generalizes well to initial conditions containing primordial non-Gaussianity, without the need for any additional style parameters or retraining.
COApr 4, 2023
The CAMELS project: Expanding the galaxy formation model space with new ASTRID and 28-parameter TNG and SIMBA suitesYueying Ni, Shy Genel, Daniel Anglés-Alcázar et al.
We present CAMELS-ASTRID, the third suite of hydrodynamical simulations in the Cosmology and Astrophysics with MachinE Learning (CAMELS) project, along with new simulation sets that extend the model parameter space based on the previous frameworks of CAMELS-TNG and CAMELS-SIMBA, to provide broader training sets and testing grounds for machine-learning algorithms designed for cosmological studies. CAMELS-ASTRID employs the galaxy formation model following the ASTRID simulation and contains 2,124 hydrodynamic simulation runs that vary 3 cosmological parameters ($Ω_m$, $σ_8$, $Ω_b$) and 4 parameters controlling stellar and AGN feedback. Compared to the existing TNG and SIMBA simulation suites in CAMELS, the fiducial model of ASTRID features the mildest AGN feedback and predicts the least baryonic effect on the matter power spectrum. The training set of ASTRID covers a broader variation in the galaxy populations and the baryonic impact on the matter power spectrum compared to its TNG and SIMBA counterparts, which can make machine-learning models trained on the ASTRID suite exhibit better extrapolation performance when tested on other hydrodynamic simulation sets. We also introduce extension simulation sets in CAMELS that widely explore 28 parameters in the TNG and SIMBA models, demonstrating the enormity of the overall galaxy formation model parameter space and the complex non-linear interplay between cosmology and astrophysical processes. With the new simulation suites, we show that building robust machine-learning models favors training and testing on the largest possible diversity of galaxy formation models. We also demonstrate that it is possible to train accurate neural networks to infer cosmological parameters using the high-dimensional TNG-SB28 simulation set.
COFeb 27, 2023
Robust Field-level Likelihood-free Inference with GalaxiesNatalí S. M. de Santi, Helen Shao, Francisco Villaescusa-Navarro et al.
We train graph neural networks to perform field-level likelihood-free inference using galaxy catalogs from state-of-the-art hydrodynamic simulations of the CAMELS project. Our models are rotational, translational, and permutation invariant and do not impose any cut on scale. From galaxy catalogs that only contain $3$D positions and radial velocities of $\sim 1, 000$ galaxies in tiny $(25~h^{-1}{\rm Mpc})^3$ volumes our models can infer the value of $Ω_{\rm m}$ with approximately $12$ % precision. More importantly, by testing the models on galaxy catalogs from thousands of hydrodynamic simulations, each having a different efficiency of supernova and AGN feedback, run with five different codes and subgrid models - IllustrisTNG, SIMBA, Astrid, Magneticum, SWIFT-EAGLE -, we find that our models are robust to changes in astrophysics, subgrid physics, and subhalo/galaxy finder. Furthermore, we test our models on $1,024$ simulations that cover a vast region in parameter space - variations in $5$ cosmological and $23$ astrophysical parameters - finding that the model extrapolates really well. Our results indicate that the key to building a robust model is the use of both galaxy positions and velocities, suggesting that the network have likely learned an underlying physical relation that does not depend on galaxy formation and is valid on scales larger than $\sim10~h^{-1}{\rm kpc}$.
HEP-PHMar 15, 2022
Machine Learning and CosmologyCora Dvorkin, Siddharth Mishra-Sharma, Brian Nord et al.
Methods based on machine learning have recently made substantial inroads in many corners of cosmology. Through this process, new computational tools, new perspectives on data collection, model development, analysis, and discovery, as well as new communities and educational pathways have emerged. Despite rapid progress, substantial potential at the intersection of cosmology and machine learning remains untapped. In this white paper, we summarize current and ongoing developments relating to the application of machine learning within cosmology and provide a set of recommendations aimed at maximizing the scientific impact of these burgeoning tools over the coming decade through both technical development as well as the fostering of emerging communities.
COSep 14, 2022
Robust field-level inference with dark matter halosHelen Shao, Francisco Villaescusa-Navarro, Pablo Villanueva-Domingo et al.
We train graph neural networks on halo catalogues from Gadget N-body simulations to perform field-level likelihood-free inference of cosmological parameters. The catalogues contain $\lesssim$5,000 halos with masses $\gtrsim 10^{10}~h^{-1}M_\odot$ in a periodic volume of $(25~h^{-1}{\rm Mpc})^3$; every halo in the catalogue is characterized by several properties such as position, mass, velocity, concentration, and maximum circular velocity. Our models, built to be permutationally, translationally, and rotationally invariant, do not impose a minimum scale on which to extract information and are able to infer the values of $Ω_{\rm m}$ and $σ_8$ with a mean relative error of $\sim6\%$, when using positions plus velocities and positions plus masses, respectively. More importantly, we find that our models are very robust: they can infer the value of $Ω_{\rm m}$ and $σ_8$ when tested using halo catalogues from thousands of N-body simulations run with five different N-body codes: Abacus, CUBEP$^3$M, Enzo, PKDGrav3, and Ramses. Surprisingly, the model trained to infer $Ω_{\rm m}$ also works when tested on thousands of state-of-the-art CAMELS hydrodynamic simulations run with four different codes and subgrid physics implementations. Using halo properties such as concentration and maximum circular velocity allow our models to extract more information, at the expense of breaking the robustness of the models. This may happen because the different N-body codes are not converged on the relevant scales corresponding to these parameters.
COOct 23, 2023
Field-level simulation-based inference with galaxy catalogs: the impact of systematic effectsNatalí S. M. de Santi, Francisco Villaescusa-Navarro, L. Raul Abramo et al.
It has been recently shown that a powerful way to constrain cosmological parameters from galaxy redshift surveys is to train graph neural networks to perform field-level likelihood-free inference without imposing cuts on scale. In particular, de Santi et al. (2023) developed models that could accurately infer the value of $Ω_{\rm m}$ from catalogs that only contain the positions and radial velocities of galaxies that are robust to uncertainties in astrophysics and subgrid models. However, observations are affected by many effects, including 1) masking, 2) uncertainties in peculiar velocities and radial distances, and 3) different galaxy selections. Moreover, observations only allow us to measure redshift, intertwining galaxies' radial positions and velocities. In this paper we train and test our models on galaxy catalogs, created from thousands of state-of-the-art hydrodynamic simulations run with different codes from the CAMELS project, that incorporate these observational effects. We find that, although the presence of these effects degrades the precision and accuracy of the models, and increases the fraction of catalogs where the model breaks down, the fraction of galaxy catalogs where the model performs well is over 90 %, demonstrating the potential of these models to constrain cosmological parameters even when applied to real data.
COJun 9, 2022
Simple lessons from complex learning: what a neural network model learns about cosmic structure formationDrew Jamieson, Yin Li, Siyu He et al.
We train a neural network model to predict the full phase space evolution of cosmological N-body simulations. Its success implies that the neural network model is accurately approximating the Green's function expansion that relates the initial conditions of the simulations to its outcome at later times in the deeply nonlinear regime. We test the accuracy of this approximation by assessing its performance on well understood simple cases that have either known exact solutions or well understood expansions. These scenarios include spherical configurations, isolated plane waves, and two interacting plane waves: initial conditions that are very different from the Gaussian random fields used for training. We find our model generalizes well to these well understood scenarios, demonstrating that the networks have inferred general physical principles and learned the nonlinear mode couplings from the complex, random Gaussian training data. These tests also provide a useful diagnostic for finding the model's strengths and weaknesses, and identifying strategies for model improvement. We also test the model on initial conditions that contain only transverse modes, a family of modes that differ not only in their phases but also in their evolution from the longitudinal growing modes used in the training set. When the network encounters these initial conditions that are orthogonal to the training set, the model fails completely. In addition to these simple configurations, we evaluate the model's predictions for the density, displacement, and momentum power spectra with standard initial conditions for N-body simulations. We compare these summary statistics against N-body results and an approximate, fast simulation method called COLA. Our model achieves percent level accuracy at nonlinear scales of $k\sim 1\ \mathrm{Mpc}^{-1}\, h$, representing a significant improvement over COLA.
COApr 28, 2022
Learning cosmology and clustering with cosmic graphsPablo Villanueva-Domingo, Francisco Villaescusa-Navarro
We train deep learning models on thousands of galaxy catalogues from the state-of-the-art hydrodynamic simulations of the CAMELS project to perform regression and inference. We employ Graph Neural Networks (GNNs), architectures designed to work with irregular and sparse data, like the distribution of galaxies in the Universe. We first show that GNNs can learn to compute the power spectrum of galaxy catalogues with a few percent accuracy. We then train GNNs to perform likelihood-free inference at the galaxy-field level. Our models are able to infer the value of $Ω_{\rm m}$ with a $\sim12\%-13\%$ accuracy just from the positions of $\sim1000$ galaxies in a volume of $(25~h^{-1}{\rm Mpc})^3$ at $z=0$ while accounting for astrophysical uncertainties as modelled in CAMELS. Incorporating information from galaxy properties, such as stellar mass, stellar metallicity, and stellar radius, increases the accuracy to $4\%-8\%$. Our models are built to be translational and rotational invariant, and they can extract information from any scale larger than the minimum distance between two galaxies. However, our models are not completely robust: testing on simulations run with a different subgrid physics than the ones used for training does not yield as accurate results.
GASep 4, 2024
How DREAMS are made: Emulating Satellite Galaxy and Subhalo Populations with Diffusion Models and Point CloudsTri Nguyen, Francisco Villaescusa-Navarro, Siddharth Mishra-Sharma et al.
The connection between galaxies and their host dark matter (DM) halos is critical to our understanding of cosmology, galaxy formation, and DM physics. To maximize the return of upcoming cosmological surveys, we need an accurate way to model this complex relationship. Many techniques have been developed to model this connection, from Halo Occupation Distribution (HOD) to empirical and semi-analytic models to hydrodynamic. Hydrodynamic simulations can incorporate more detailed astrophysical processes but are computationally expensive; HODs, on the other hand, are computationally cheap but have limited accuracy. In this work, we present NeHOD, a generative framework based on variational diffusion model and Transformer, for painting galaxies/subhalos on top of DM with an accuracy of hydrodynamic simulations but at a computational cost similar to HOD. By modeling galaxies/subhalos as point clouds, instead of binning or voxelization, we can resolve small spatial scales down to the resolution of the simulations. For each halo, NeHOD predicts the positions, velocities, masses, and concentrations of its central and satellite galaxies. We train NeHOD on the TNG-Warm DM suite of the DREAMS project, which consists of 1024 high-resolution zoom-in hydrodynamic simulations of Milky Way-mass halos with varying warm DM mass and astrophysical parameters. We show that our model captures the complex relationships between subhalo properties as a function of the simulation parameters, including the mass functions, stellar-halo mass relations, concentration-mass relations, and spatial clustering. Our method can be used for a large variety of downstream applications, from galaxy clustering to strong lensing studies.
CONov 2, 2023
Domain Adaptive Graph Neural Networks for Constraining Cosmological Parameters Across Multiple Data SetsAndrea Roncoli, Aleksandra Ćiprijanović, Maggie Voetberg et al.
Deep learning models have been shown to outperform methods that rely on summary statistics, like the power spectrum, in extracting information from complex cosmological data sets. However, due to differences in the subgrid physics implementation and numerical approximations across different simulation suites, models trained on data from one cosmological simulation show a drop in performance when tested on another. Similarly, models trained on any of the simulations would also likely experience a drop in performance when applied to observational data. Training on data from two different suites of the CAMELS hydrodynamic cosmological simulations, we examine the generalization capabilities of Domain Adaptive Graph Neural Networks (DA-GNNs). By utilizing GNNs, we capitalize on their capacity to capture structured scale-free cosmological information from galaxy distributions. Moreover, by including unsupervised domain adaptation via Maximum Mean Discrepancy (MMD), we enable our models to extract domain-invariant features. We demonstrate that DA-GNN achieves higher accuracy and robustness on cross-dataset tasks (up to $28\%$ better relative error and up to almost an order of magnitude better $χ^2$). Using data visualizations, we show the effects of domain adaptation on proper latent space data alignment. This shows that DA-GNNs are a promising method for extracting domain-independent cosmological information, a vital step toward robust deep learning for real cosmic survey data.
COMay 16, 2022
Fast and realistic large-scale structure from machine-learning-augmented random field simulationsDavide Piras, Benjamin Joachimi, Francisco Villaescusa-Navarro
Producing thousands of simulations of the dark matter distribution in the Universe with increasing precision is a challenging but critical task to facilitate the exploitation of current and forthcoming cosmological surveys. Many inexpensive substitutes to full $N$-body simulations have been proposed, even though they often fail to reproduce the statistics of the smaller, non-linear scales. Among these alternatives, a common approximation is represented by the lognormal distribution, which comes with its own limitations as well, while being extremely fast to compute even for high-resolution density fields. In this work, we train a generative deep learning model, mainly made of convolutional layers, to transform projected lognormal dark matter density fields to more realistic dark matter maps, as obtained from full $N$-body simulations. We detail the procedure that we follow to generate highly correlated pairs of lognormal and simulated maps, which we use as our training data, exploiting the information of the Fourier phases. We demonstrate the performance of our model comparing various statistical tests with different field resolutions, redshifts and cosmological parameters, proving its robustness and explaining its current limitations. When evaluated on 100 test maps, the augmented lognormal random fields reproduce the power spectrum up to wavenumbers of $1 \ h \ \rm{Mpc}^{-1}$, and the bispectrum within 10%, and always within the error bars, of the fiducial target simulations. Finally, we describe how we plan to integrate our proposed model with existing tools to yield more accurate spherical random fields for weak lensing analysis.
CODec 11, 2025
Galaxy Phase-Space and Field-Level Cosmology: The Strength of Semi-Analytic ModelsNatalí S. M. de Santi, Francisco Villaescusa-Navarro, Pablo Araya-Araya et al.
Semi-analytic models are a widely used approach to simulate galaxy properties within a cosmological framework, relying on simplified yet physically motivated prescriptions. They have also proven to be an efficient alternative for generating accurate galaxy catalogs, offering a faster and less computationally expensive option compared to full hydrodynamical simulations. In this paper, we demonstrate that using only galaxy $3$D positions and radial velocities, we can train a graph neural network coupled to a moment neural network to obtain a robust machine learning based model capable of estimating the matter density parameters, $Ω_{\rm m}$, with a precision of approximately 10%. The network is trained on ($25 h^{-1}$Mpc)$^3$ volumes of galaxy catalogs from L-Galaxies and can successfully extrapolate its predictions to other semi-analytic models (GAEA, SC-SAM, and Shark) and, more remarkably, to hydrodynamical simulations (Astrid, SIMBA, IllustrisTNG, and SWIFT-EAGLE). Our results show that the network is robust to variations in astrophysical and subgrid physics, cosmological and astrophysical parameters, and the different halo-profile treatments used across simulations. This suggests that the physical relationships encoded in the phase-space of semi-analytic models are largely independent of their specific physical prescriptions, reinforcing their potential as tools for the generation of realistic mock catalogs for cosmological parameter inference.
AIJul 9, 2025Code
Open Source Planning & Control System with Language Agents for Autonomous Scientific DiscoveryLicong Xu, Milind Sarkar, Anto I. Lonappan et al.
We present a multi-agent system for automation of scientific research tasks, cmbagent (https://github.com/CMBAgents/cmbagent). The system is formed by about 30 Large Language Model (LLM) agents and implements a Planning & Control strategy to orchestrate the agentic workflow, with no human-in-the-loop at any point. Each agent specializes in a different task (performing retrieval on scientific papers and codebases, writing code, interpreting results, critiquing the output of other agents) and the system is able to execute code locally. We successfully apply cmbagent to carry out a PhD level cosmology task (the measurement of cosmological parameters using supernova data) and evaluate its performance on two benchmark sets, finding superior performance over state-of-the-art LLMs. The source code is available on GitHub, demonstration videos are also available, and the system is deployed on HuggingFace and will be available on the cloud.
CONov 16, 2021Code
Inferring halo masses with Graph Neural NetworksPablo Villanueva-Domingo, Francisco Villaescusa-Navarro, Daniel Anglés-Alcázar et al.
Understanding the halo-galaxy connection is fundamental in order to improve our knowledge on the nature and properties of dark matter. In this work we build a model that infers the mass of a halo given the positions, velocities, stellar masses, and radii of the galaxies it hosts. In order to capture information from correlations among galaxy properties and their phase-space, we use Graph Neural Networks (GNNs), that are designed to work with irregular and sparse data. We train our models on galaxies from more than 2,000 state-of-the-art simulations from the Cosmology and Astrophysics with MachinE Learning Simulations (CAMELS) project. Our model, that accounts for cosmological and astrophysical uncertainties, is able to constrain the masses of the halos with a $\sim$0.2 dex accuracy. Furthermore, a GNN trained on a suite of simulations is able to preserve part of its accuracy when tested on simulations run with a different code that utilizes a distinct subgrid physics model, showing the robustness of our method. The PyTorch Geometric implementation of the GNN is publicly available on Github at https://github.com/PabloVD/HaloGraphNet
COOct 29, 2020Code
deep21: a Deep Learning Method for 21cm Foreground RemovalT. Lucas Makinen, Lachlan Lancaster, Francisco Villaescusa-Navarro et al.
We seek to remove foreground contaminants from 21cm intensity mapping observations. We demonstrate that a deep convolutional neural network (CNN) with a UNet architecture and three-dimensional convolutions, trained on simulated observations, can effectively separate frequency and spatial patterns of the cosmic neutral hydrogen (HI) signal from foregrounds in the presence of noise. Cleaned maps recover cosmological clustering statistics within 10% at all relevant angular scales and frequencies. This amounts to a reduction in prediction variance of over an order of magnitude on small angular scales ($\ell > 300$), and improved accuracy for small radial scales ($k_{\parallel} > 0.17\ \rm h\ Mpc^{-1})$ compared to standard Principal Component Analysis (PCA) methods. We estimate posterior confidence intervals for the network's prediction by training an ensemble of UNets. Our approach demonstrates the feasibility of analyzing 21cm intensity maps, as opposed to derived summary statistics, for upcoming radio experiments, as long as the simulated foreground model is sufficiently realistic. We provide the code used for this analysis on Github https://github.com/tlmakinen/deep21 as well as a browser-based tutorial for the experiment and UNet model via the accompanying http://bit.ly/deep21-colab Colab notebook.
IMAug 7, 2025
CLAPP: The CLASS LLM Agent for Pair ProgrammingSantiago Casas, Christian Fidler, Boris Bolliet et al.
We introduce CLAPP (CLASS LLM Agent for Pair Programming), an interactive AI assistant designed to support researchers working with the Einstein-Boltzmann solver CLASS. CLAPP leverages large language models (LLMs) and domain-specific retrieval to provide conversational coding support for CLASS-answering questions, generating code, debugging errors, and producing plots. Its architecture combines multi-agent LLM orchestration, semantic search across CLASS documentation, and a live Python execution environment. Deployed as a user-friendly web application, CLAPP lowers the entry barrier for scientists unfamiliar with AI tools and enables more productive human-AI collaboration in computational and numerical cosmology. The app is available at https://classclapp.streamlit.app
IMJul 9, 2025
Evaluating Retrieval-Augmented Generation Agents for Autonomous Scientific Discovery in AstrophysicsXueqing Xu, Boris Bolliet, Adrian Dimitrov et al.
We evaluate 9 Retrieval Augmented Generation (RAG) agent configurations on 105 Cosmology Question-Answer (QA) pairs that we built specifically for this purpose.The RAG configurations are manually evaluated by a human expert, that is, a total of 945 generated answers were assessed. We find that currently the best RAG agent configuration is with OpenAI embedding and generative model, yielding 91.4\% accuracy. Using our human evaluation results we calibrate LLM-as-a-Judge (LLMaaJ) system which can be used as a robust proxy for human evaluation. These results allow us to systematically select the best RAG agent configuration for multi-agent system for autonomous scientific discovery in astrophysics (e.g., cmbagent presented in a companion paper) and provide us with an LLMaaJ system that can be scaled to thousands of cosmology QA pairs. We make our QA dataset, human evaluation results, RAG pipelines, and LLMaaJ system publicly available for further use by the astrophysics community.
LGJul 4, 2025
CosmoBench: A Multiscale, Multiview, Multitask Cosmology Benchmark for Geometric Deep LearningNingyuan Huang, Richard Stiskalek, Jun-Young Lee et al.
Cosmological simulations provide a wealth of data in the form of point clouds and directed trees. A crucial goal is to extract insights from this data that shed light on the nature and composition of the Universe. In this paper we introduce CosmoBench, a benchmark dataset curated from state-of-the-art cosmological simulations whose runs required more than 41 million core-hours and generated over two petabytes of data. CosmoBench is the largest dataset of its kind: it contains 34 thousand point clouds from simulations of dark matter halos and galaxies at three different length scales, as well as 25 thousand directed trees that record the formation history of halos on two different time scales. The data in CosmoBench can be used for multiple tasks -- to predict cosmological parameters from point clouds and merger trees, to predict the velocities of individual halos and galaxies from their collective positions, and to reconstruct merger trees on finer time scales from those on coarser time scales. We provide several baselines on these tasks, some based on established approaches from cosmological modeling and others rooted in machine learning. For the latter, we study different approaches -- from simple linear models that are minimally constrained by symmetries to much larger and more computationally-demanding models in deep learning, such as graph neural networks. We find that least-squares fits with a handful of invariant features sometimes outperform deep architectures with many more parameters and far longer training time. Still there remains tremendous potential to improve these baselines by combining machine learning and cosmology to fully exploit the data. CosmoBench sets the stage for bridging cosmology and geometric deep learning at scale. We invite the community to push the frontier of scientific discovery by engaging with this dataset, available at https://cosmobench.streamlit.app
AISep 2, 2025
The Future of Artificial Intelligence and the Mathematical and Physical Sciences (AI+MPS)Andrew Ferguson, Marisa LaFleur, Lars Ruthotto et al. · stanford
This community paper developed out of the NSF Workshop on the Future of Artificial Intelligence (AI) and the Mathematical and Physics Sciences (MPS), which was held in March 2025 with the goal of understanding how the MPS domains (Astronomy, Chemistry, Materials Research, Mathematical Sciences, and Physics) can best capitalize on, and contribute to, the future of AI. We present here a summary and snapshot of the MPS community's perspective, as of Spring/Summer 2025, in a rapidly developing field. The link between AI and MPS is becoming increasingly inextricable; now is a crucial moment to strengthen the link between AI and Science by pursuing a strategy that proactively and thoughtfully leverages the potential of AI for scientific discovery and optimizes opportunities to impact the development of AI by applying concepts from fundamental science. To achieve this, we propose activities and strategic priorities that: (1) enable AI+MPS research in both directions; (2) build up an interdisciplinary community of AI+MPS researchers; and (3) foster education and workforce development in AI for MPS researchers and students. We conclude with a summary of suggested priorities for funding agencies, educational institutions, and individual researchers to help position the MPS community to be a leader in, and take full advantage of, the transformative potential of AI+MPS.
COJan 4, 2022
Augmenting astrophysical scaling relations with machine learning: application to reducing the Sunyaev-Zeldovich flux-mass scatterDigvijay Wadekar, Leander Thiele, Francisco Villaescusa-Navarro et al.
Complex astrophysical systems often exhibit low-scatter relations between observable properties (e.g., luminosity, velocity dispersion, oscillation period). These scaling relations illuminate the underlying physics, and can provide observational tools for estimating masses and distances. Machine learning can provide a fast and systematic way to search for new scaling relations (or for simple extensions to existing relations) in abstract high-dimensional parameter spaces. We use a machine learning tool called symbolic regression (SR), which models patterns in a dataset in the form of analytic equations. We focus on the Sunyaev-Zeldovich flux$-$cluster mass relation ($Y_\mathrm{SZ}-M$), the scatter in which affects inference of cosmological parameters from cluster abundance data. Using SR on the data from the IllustrisTNG hydrodynamical simulation, we find a new proxy for cluster mass which combines $Y_\mathrm{SZ}$ and concentration of ionized gas ($c_\mathrm{gas}$): $M \propto Y_\mathrm{conc}^{3/5} \equiv Y_\mathrm{SZ}^{3/5} (1-A\, c_\mathrm{gas})$. $Y_\mathrm{conc}$ reduces the scatter in the predicted $M$ by $\sim 20-30$\% for large clusters ($M\gtrsim 10^{14}\, h^{-1} \, M_\odot$), as compared to using just $Y_\mathrm{SZ}$. We show that the dependence on $c_\mathrm{gas}$ is linked to cores of clusters exhibiting larger scatter than their outskirts. Finally, we test $Y_\mathrm{conc}$ on clusters from CAMELS simulations and show that $Y_\mathrm{conc}$ is robust against variations in cosmology, subgrid physics, and cosmic variance. Our results and methodology can be useful for accurate multiwavelength cluster mass estimation from upcoming CMB and X-ray surveys like ACT, SO, eROSITA and CMB-S4.
COJan 4, 2022
The CAMELS project: public data releaseFrancisco Villaescusa-Navarro, Shy Genel, Daniel Anglés-Alcázar et al.
The Cosmology and Astrophysics with MachinE Learning Simulations (CAMELS) project was developed to combine cosmology with astrophysics through thousands of cosmological hydrodynamic simulations and machine learning. CAMELS contains 4,233 cosmological simulations, 2,049 N-body and 2,184 state-of-the-art hydrodynamic simulations that sample a vast volume in parameter space. In this paper we present the CAMELS public data release, describing the characteristics of the CAMELS simulations and a variety of data products generated from them, including halo, subhalo, galaxy, and void catalogues, power spectra, bispectra, Lyman-$α$ spectra, probability distribution functions, halo radial profiles, and X-rays photon lists. We also release over one thousand catalogues that contain billions of galaxies from CAMELS-SAM: a large collection of N-body simulations that have been combined with the Santa Cruz Semi-Analytic Model. We release all the data, comprising more than 350 terabytes and containing 143,922 snapshots, millions of halos, galaxies and summary statistics. We provide further technical details on how to access, download, read, and process the data at \url{https://camels.readthedocs.io}.
GANov 29, 2021
Weighing the Milky Way and Andromeda with Artificial IntelligencePablo Villanueva-Domingo, Francisco Villaescusa-Navarro, Shy Genel et al.
We present new constraints on the masses of the halos hosting the Milky Way and Andromeda galaxies derived using graph neural networks. Our models, trained on thousands of state-of-the-art hydrodynamic simulations of the CAMELS project, only make use of the positions, velocities and stellar masses of the galaxies belonging to the halos, and are able to perform likelihood-free inference on halo masses while accounting for both cosmological and astrophysical uncertainties. Our constraints are in agreement with estimates from other traditional methods.
LGSep 22, 2021
The CAMELS Multifield Dataset: Learning the Universe's Fundamental Parameters with Artificial IntelligenceFrancisco Villaescusa-Navarro, Shy Genel, Daniel Angles-Alcazar et al.
We present the Cosmology and Astrophysics with MachinE Learning Simulations (CAMELS) Multifield Dataset, CMD, a collection of hundreds of thousands of 2D maps and 3D grids containing many different properties of cosmic gas, dark matter, and stars from 2,000 distinct simulated universes at several cosmic times. The 2D maps and 3D grids represent cosmic regions that span $\sim$100 million light years and have been generated from thousands of state-of-the-art hydrodynamic and gravity-only N-body simulations from the CAMELS project. Designed to train machine learning models, CMD is the largest dataset of its kind containing more than 70 Terabytes of data. In this paper we describe CMD in detail and outline a few of its applications. We focus our attention on one such task, parameter inference, formulating the problems we face as a challenge to the community. We release all data and provide further technical details at https://camels-multifield-dataset.readthedocs.io.
COSep 21, 2021
Robust marginalization of baryonic effects for cosmological inference at the field levelFrancisco Villaescusa-Navarro, Shy Genel, Daniel Angles-Alcazar et al.
We train neural networks to perform likelihood-free inference from $(25\,h^{-1}{\rm Mpc})^2$ 2D maps containing the total mass surface density from thousands of hydrodynamic simulations of the CAMELS project. We show that the networks can extract information beyond one-point functions and power spectra from all resolved scales ($\gtrsim 100\,h^{-1}{\rm kpc}$) while performing a robust marginalization over baryonic physics at the field level: the model can infer the value of $Ω_{\rm m} (\pm 4\%)$ and $σ_8 (\pm 2.5\%)$ from simulations completely different to the ones used to train it.
COSep 20, 2021
Multifield Cosmology with Artificial IntelligenceFrancisco Villaescusa-Navarro, Daniel Anglés-Alcázar, Shy Genel et al.
Astrophysical processes such as feedback from supernovae and active galactic nuclei modify the properties and spatial distribution of dark matter, gas, and galaxies in a poorly understood way. This uncertainty is one of the main theoretical obstacles to extract information from cosmological surveys. We use 2,000 state-of-the-art hydrodynamic simulations from the CAMELS project spanning a wide variety of cosmological and astrophysical models and generate hundreds of thousands of 2-dimensional maps for 13 different fields: from dark matter to gas and stellar properties. We use these maps to train convolutional neural networks to extract the maximum amount of cosmological information while marginalizing over astrophysical effects at the field level. Although our maps only cover a small area of $(25~h^{-1}{\rm Mpc})^2$, and the different fields are contaminated by astrophysical effects in very different ways, our networks can infer the values of $Ω_{\rm m}$ and $σ_8$ with a few percent level precision for most of the fields. We find that the marginalization performed by the network retains a wealth of cosmological information compared to a model trained on maps from gravity-only N-body simulations that are not contaminated by astrophysical effects. Finally, we train our networks on multifields -- 2D maps that contain several fields as different colors or channels -- and find that not only they can infer the value of all parameters with higher accuracy than networks trained on individual fields, but they can constrain the value of $Ω_{\rm m}$ with higher accuracy than the maps from the N-body simulations.
CODec 10, 2020
Learning the Evolution of the Universe in N-body SimulationsChang Chen, Yin Li, Francisco Villaescusa-Navarro et al.
Understanding the physics of large cosmological surveys down to small (nonlinear) scales will significantly improve our knowledge of the Universe. Large N-body simulations have been built to obtain predictions in the non-linear regime. However, N-body simulations are computationally expensive and generate large amount of data, putting burdens on storage. These data are snapshots of the simulated Universe at different times, and fine sampling is necessary to accurately save its whole history. We employ a deep neural network model to predict the nonlinear N-body simulation at an intermediate time step given two widely separated snapshots. Our results outperform the cubic Hermite interpolation benchmark method in interpolating N-body simulations. This work can greatly reduce the storage requirement and allow us to reconstruct the cosmic history from far fewer snapshots of the universe.
CODec 1, 2020
Fast and Accurate Non-Linear Predictions of Universes with Deep LearningRenan Alves de Oliveira, Yin Li, Francisco Villaescusa-Navarro et al.
Cosmologists aim to model the evolution of initially low amplitude Gaussian density fluctuations into the highly non-linear "cosmic web" of galaxies and clusters. They aim to compare simulations of this structure formation process with observations of large-scale structure traced by galaxies and infer the properties of the dark energy and dark matter that make up 95% of the universe. These ensembles of simulations of billions of galaxies are computationally demanding, so that more efficient approaches to tracing the non-linear growth of structure are needed. We build a V-Net based model that transforms fast linear predictions into fully nonlinear predictions from numerical simulations. Our NN model learns to emulate the simulations down to small scales and is both faster and more accurate than the current state-of-the-art approximate methods. It also achieves comparable accuracy when tested on universes of significantly different cosmological parameters from the one used in training. This suggests that our model generalizes well beyond our training set.
COOct 17, 2019
From Dark Matter to Galaxies with Convolutional Neural NetworksJacky H. T. Yip, Xinyue Zhang, Yanfang Wang et al.
Cosmological simulations play an important role in the interpretation of astronomical data, in particular in comparing observed data to our theoretical expectations. However, to compare data with these simulations, the simulations in principle need to include gravity, magneto-hydrodyanmics, radiative transfer, etc. These ideal large-volume simulations (gravo-magneto-hydrodynamical) are incredibly computationally expensive which can cost tens of millions of CPU hours to run. In this paper, we propose a deep learning approach to map from the dark-matter-only simulation (computationally cheaper) to the galaxy distribution (from the much costlier cosmological simulation). The main challenge of this task is the high sparsity in the target galaxy distribution: space is mainly empty. We propose a cascade architecture composed of a classification filter followed by a regression procedure. We show that our result outperforms a state-of-the-art model used in the astronomical community, and provides a good trade-off between computational cost and prediction accuracy.
COOct 9, 2019
Learning neutrino effects in Cosmology with Convolutional Neural NetworksElena Giusarma, Mauricio Reyes Hurtado, Francisco Villaescusa-Navarro et al.
Measuring the sum of the three active neutrino masses, $M_ν$, is one of the most important challenges in modern cosmology. Massive neutrinos imprint characteristic signatures on several cosmological observables in particular on the large-scale structure of the Universe. In order to maximize the information that can be retrieved from galaxy surveys, accurate theoretical predictions in the non-linear regime are needed. Currently, one way to achieve those predictions is by running cosmological numerical simulations. Unfortunately, producing those simulations requires high computational resources -- several hundred to thousand core-hours for each neutrino mass case. In this work, we propose a new method, based on a deep learning network, to quickly generate simulations with massive neutrinos from standard $Λ$CDM simulations without neutrinos. We computed multiple relevant statistical measures of deep-learning generated simulations, and conclude that our approach is an accurate alternative to the traditional N-body techniques. In particular the power spectrum is within $\simeq 6\%$ down to non-linear scales $k=0.7$~\rm h/Mpc. Finally, our method allows us to generate massive neutrino simulations 10,000 times faster than the traditional methods.
COApr 29, 2019
HIGAN: Cosmic Neutral Hydrogen with Generative Adversarial NetworksJuan Zamudio-Fernandez, Atakan Okan, Francisco Villaescusa-Navarro et al.
One of the most promising ways to observe the Universe is by detecting the 21cm emission from cosmic neutral hydrogen (HI) through radio-telescopes. Those observations can shed light on fundamental astrophysical questions only if accurate theoretical predictions are available. In order to maximize the scientific return of these surveys, those predictions need to include different observables and be precise on non-linear scales. Currently, one of the best ways to achieve this is via cosmological hydrodynamic simulations; however, the computational cost of these simulations is high -- tens of millions of CPU hours. In this work, we use Wasserstein Generative Adversarial Networks (WGANs) to generate new high-resolution ($35~h^{-1}{\rm kpc}$) 3D realizations of cosmic HI at $z=5$. We do so by sampling from a 100-dimension manifold, learned by the generator, that characterizes the fully non-linear abundance and clustering of cosmic HI from the state-of-the-art simulation IllustrisTNG. We show that different statistical properties of the produced samples -- 1D PDF, power spectrum, bispectrum, and void size function -- match very well those of IllustrisTNG, and outperform state-of-the-art models such as Halo Occupation Distributions (HODs). Our WGAN samples reproduce the abundance of HI across 9 orders of magnitude, from the Ly$α$ forest to Damped Lyman Absorbers. WGAN can produce new samples orders of magnitude faster than hydrodynamic simulations.
COFeb 15, 2019
From Dark Matter to Galaxies with Convolutional NetworksXinyue Zhang, Yanfang Wang, Wei Zhang et al.
Cosmological surveys aim at answering fundamental questions about our Universe, including the nature of dark matter or the reason of unexpected accelerated expansion of the Universe. In order to answer these questions, two important ingredients are needed: 1) data from observations and 2) a theoretical model that allows fast comparison between observation and theory. Most of the cosmological surveys observe galaxies, which are very difficult to model theoretically due to the complicated physics involved in their formation and evolution; modeling realistic galaxies over cosmological volumes requires running computationally expensive hydrodynamic simulations that can cost millions of CPU hours. In this paper, we propose to use deep learning to establish a mapping between the 3D galaxy distribution in hydrodynamic simulations and its underlying dark matter distribution. One of the major challenges in this pursuit is the very high sparsity in the predicted galaxy distribution. To this end, we develop a two-phase convolutional neural network architecture to generate fast galaxy catalogues, and compare our results against a standard cosmological technique. We find that our proposed approach either outperforms or is competitive with traditional cosmological techniques. Compared to the common methods used in cosmology, our approach also provides a nice trade-off between time-consumption (comparable to fastest benchmark in the literature) and the quality and accuracy of the predicted simulation. In combination with current and upcoming data from cosmological observations, our method has the potential to answer fundamental questions about our Universe with the highest accuracy.