Raul Jimenez

Francisco Villaescusa-Navarro, Boris Bolliet, Pablo Villanueva-Domingo et al.

We present Denario, an AI multi-agent system designed to serve as a scientific research assistant. Denario can perform many different tasks, such as generating ideas, checking the literature, developing research plans, writing and executing code, making plots, and drafting and reviewing a scientific paper. The system has a modular architecture, allowing it to handle specific tasks, such as generating an idea, or carrying out end-to-end scientific analysis using Cmbagent as a deep-research backend. In this work, we describe in detail Denario and its modules, and illustrate its capabilities by presenting multiple AI-generated papers generated by it in many different scientific disciplines such as astrophysics, biology, biophysics, biomedical informatics, chemistry, material science, mathematical physics, medicine, neuroscience and planetary science. Denario also excels at combining ideas from different disciplines, and we illustrate this by showing a paper that applies methods from quantum physics and machine learning to astrophysical data. We report the evaluations performed on these papers by domain experts, who provided both numerical scores and review-like feedback. We then highlight the strengths, weaknesses, and limitations of the current system. Finally, we discuss the ethical implications of AI-driven research and reflect on how such technology relates to the philosophy of science. We publicly release the code at https://github.com/AstroPilot-AI/Denario. A Denario demo can also be run directly on the web at https://huggingface.co/spaces/astropilot-ai/Denario, and the full app will be deployed on the cloud.

Yago Bea, Raul Jimenez, David Mateos et al.

Holography relates gravitational theories in five dimensions to four-dimensional quantum field theories in flat space. Under this map, the equation of state of the field theory is encoded in the black hole solutions of the gravitational theory. Solving the five-dimensional Einstein's equations to determine the equation of state is an algorithmic, direct problem. Determining the gravitational theory that gives rise to a prescribed equation of state is a much more challenging, inverse problem. We present a novel approach to solve this problem based on physics-informed neural networks. The resulting algorithm is not only data-driven but also informed by the physics of the Einstein's equations. We successfully apply it to theories with crossovers, first- and second-order phase transitions.

Pedro Tarancón-Álvarez, Pablo Tejerina-Pérez, Raul Jimenez et al.

Non-linear differential equations are a fundamental tool to describe different phenomena in nature. However, we still lack a well-established method to tackle stiff differential equations. Here we present a machine learning framework to facilitate the solution of nonlinear multiscale differential equations and, especially, inverse problems using Physics-Informed Neural Networks (PINNs). This framework is based on what is called \textit{multi-head} (MH) training, which involves training the network to learn a general space of all solutions for a given set of equations with certain variability, rather than learning a specific solution of the system. This setup is used with a second novel technique that we call Unimodular Regularization (UR) of the latent space of solutions. We show that the multi-head approach, combined with Unimodular Regularization, significantly improves the efficiency of PINNs by facilitating the transfer learning process thereby enabling the finding of solutions for nonlinear, coupled, and multiscale differential equations.

Pedro Tarancón-Álvarez, Leonid Sarieddine, Pavlos Protopapas et al.

Embeddings provide low-dimensional representations that organize complex function spaces and support generalization. They provide a geometric representation that supports efficient retrieval, comparison, and generalization. In this work we generalize the concept to Physics Informed Neural Networks. We present a method to construct solution embedding spaces of nonlinear partial differential equations using a multi-head setup, and extract non-degenerate information from them using principal component analysis (PCA). We test this method by applying it to viscous Burgers' equation, which is solved simultaneously for a family of initial conditions and values of the viscosity. A shared network body learns a latent embedding of the solution space, while linear heads map this embedding to individual realizations. By enforcing orthogonality constraints on the heads, we obtain a principal-component decomposition of the latent space that is robust to training degeneracies and admits a direct physical interpretation. The obtained components for Burgers' equation exhibit rapid saturation, indicating that a small number of latent modes captures the dominant features of the dynamics.

Konstantin Karchev, Roberto Trotta, Raul Jimenez

Using type Ia supernovae (SNae Ia) as cosmological probes requires empirical corrections, which correlate with their host environment. We present a unified Bayesian hierarchical model designed to infer, from purely photometric observations, the intrinsic dependence of SN Ia brightness on progenitor properties (metallicity & age), the delay-time distribution (DTD) that governs their rate as a function of age, and cosmology, as well as the redshifts of all hosts. The model incorporates physics-based prescriptions for star formation and chemical evolution from Prospector-beta, dust extinction of both galaxy and SN light, and observational selection effects. We show with simulations that intrinsic dependences on metallicity and age have distinct observational signatures, with metallicity mimicking the well-known step of SN Ia magnitudes across a host stellar mass of $\approx 10^{10} M_{\odot}$. We then demonstrate neural simulation-based inference of all model parameters from mock observations of ~16 000 SNae Ia and their hosts up to redshift 0.9. Our joint physics-based approach delivers robust and precise photometric redshifts (<0.01 median scatter) and improved cosmological constraints, unlocking the full power of photometric data and paving the way for an end-to-end simulation-based analysis pipeline in the LSST era.