Boosting Convolution with Efficient MLP-Permutation for Volumetric Medical Image SegmentationYi Lin, Xiao Fang, Dong Zhang et al.
Recently, the advent of vision Transformer (ViT) has brought substantial advancements in 3D dataset benchmarks, particularly in 3D volumetric medical image segmentation (Vol-MedSeg). Concurrently, multi-layer perceptron (MLP) network has regained popularity among researchers due to their comparable results to ViT, albeit with the exclusion of the resource-intensive self-attention module. In this work, we propose a novel permutable hybrid network for Vol-MedSeg, named PHNet, which capitalizes on the strengths of both convolution neural networks (CNNs) and MLP. PHNet addresses the intrinsic isotropy problem of 3D volumetric data by employing a combination of 2D and 3D CNNs to extract local features. Besides, we propose an efficient multi-layer permute perceptron (MLPP) module that captures long-range dependence while preserving positional information. This is achieved through an axis decomposition operation that permutes the input tensor along different axes, thereby enabling the separate encoding of the positional information. Furthermore, MLPP tackles the resolution sensitivity issue of MLP in Vol-MedSeg with a token segmentation operation, which divides the feature into smaller tokens and processes them individually. Extensive experimental results validate that PHNet outperforms the state-of-the-art methods with lower computational costs on the widely-used yet challenging COVID-19-20 and Synapse benchmarks. The ablation study also demonstrates the effectiveness of PHNet in harnessing the strengths of both CNNs and MLP. The code is available on Github: \href{https://github.com/xiaofang007/PHNet}{https://github.com/xiaofang007/PHNet}.
Explainable and Safe Reinforcement Learning for Autonomous Air MobilityLei Wang, Hongyu Yang, Yi Lin et al.
Increasing traffic demands, higher levels of automation, and communication enhancements provide novel design opportunities for future air traffic controllers (ATCs). This article presents a novel deep reinforcement learning (DRL) controller to aid conflict resolution for autonomous free flight. Although DRL has achieved important advancements in this field, the existing works pay little attention to the explainability and safety issues related to DRL controllers, particularly the safety under adversarial attacks. To address those two issues, we design a fully explainable DRL framework wherein we: 1) decompose the coupled Q value learning model into a safety-awareness and efficiency (reach the target) one; and 2) use information from surrounding intruders as inputs, eliminating the needs of central controllers. In our simulated experiments, we show that by decoupling the safety-awareness and efficiency, we can exceed performance on free flight control tasks while dramatically improving explainability on practical. In addition, the safety Q learning module provides rich information about the safety situation of environments. To study the safety under adversarial attacks, we additionally propose an adversarial attack strategy that can impose both safety-oriented and efficiency-oriented attacks. The adversarial aims to minimize safety/efficiency by only attacking the agent at a few time steps. In the experiments, our attack strategy increases as many collisions as the uniform attack (i.e., attacking at every time step) by only attacking the agent four times less often, which provide insights into the capabilities and restrictions of the DRL in future ATC designs. The source code is publicly available at https://github.com/WLeiiiii/Gym-ATC-Attack-Project.
Revisiting Deep Ensemble Uncertainty for Enhanced Medical Anomaly DetectionYi Gu, Yi Lin, Kwang-Ting Cheng et al.
Medical anomaly detection (AD) is crucial in pathological identification and localization. Current methods typically rely on uncertainty estimation in deep ensembles to detect anomalies, assuming that ensemble learners should agree on normal samples while exhibiting disagreement on unseen anomalies in the output space. However, these methods may suffer from inadequate disagreement on anomalies or diminished agreement on normal samples. To tackle these issues, we propose D2UE, a Diversified Dual-space Uncertainty Estimation framework for medical anomaly detection. To effectively balance agreement and disagreement for anomaly detection, we propose Redundancy-Aware Repulsion (RAR), which uses a similarity kernel that remains invariant to both isotropic scaling and orthogonal transformations, explicitly promoting diversity in learners' feature space. Moreover, to accentuate anomalous regions, we develop Dual-Space Uncertainty (DSU), which utilizes the ensemble's uncertainty in input and output spaces. In input space, we first calculate gradients of reconstruction error with respect to input images. The gradients are then integrated with reconstruction outputs to estimate uncertainty for inputs, enabling effective anomaly discrimination even when output space disagreement is minimal. We conduct a comprehensive evaluation of five medical benchmarks with different backbones. Experimental results demonstrate the superiority of our method to state-of-the-art methods and the effectiveness of each component in our framework. Our code is available at https://github.com/Rubiscol/D2UE.
15.7IVApr 13, 2023
Deep Learning in Breast Cancer Imaging: A Decade of Progress and Future DirectionsLuyang Luo, Xi Wang, Yi Lin et al.
Breast cancer has reached the highest incidence rate worldwide among all malignancies since 2020. Breast imaging plays a significant role in early diagnosis and intervention to improve the outcome of breast cancer patients. In the past decade, deep learning has shown remarkable progress in breast cancer imaging analysis, holding great promise in interpreting the rich information and complex context of breast imaging modalities. Considering the rapid improvement in deep learning technology and the increasing severity of breast cancer, it is critical to summarize past progress and identify future challenges to be addressed. This paper provides an extensive review of deep learning-based breast cancer imaging research, covering studies on mammogram, ultrasound, magnetic resonance imaging, and digital pathology images over the past decade. The major deep learning methods and applications on imaging-based screening, diagnosis, treatment response prediction, and prognosis are elaborated and discussed. Drawn from the findings of this survey, we present a comprehensive discussion of the challenges and potential avenues for future research in deep learning-based breast cancer imaging.
Learning a Room with the Occ-SDF Hybrid: Signed Distance Function Mingled with Occupancy Aids Scene RepresentationXiaoyang Lyu, Peng Dai, Zizhang Li et al.
Implicit neural rendering, which uses signed distance function (SDF) representation with geometric priors (such as depth or surface normal), has led to impressive progress in the surface reconstruction of large-scale scenes. However, applying this method to reconstruct a room-level scene from images may miss structures in low-intensity areas or small and thin objects. We conducted experiments on three datasets to identify limitations of the original color rendering loss and priors-embedded SDF scene representation. We found that the color rendering loss results in optimization bias against low-intensity areas, causing gradient vanishing and leaving these areas unoptimized. To address this issue, we propose a feature-based color rendering loss that utilizes non-zero feature values to bring back optimization signals. Additionally, the SDF representation can be influenced by objects along a ray path, disrupting the monotonic change of SDF values when a single object is present. To counteract this, we explore using the occupancy representation, which encodes each point separately and is unaffected by objects along a querying ray. Our experimental results demonstrate that the joint forces of the feature-based rendering loss and Occ-SDF hybrid representation scheme can provide high-quality reconstruction results, especially in challenging room-level scenarios. The code would be released.
InsMix: Towards Realistic Generative Data Augmentation for Nuclei Instance SegmentationYi Lin, Zeyu Wang, Kwang-Ting Cheng et al.
Nuclei Segmentation from histology images is a fundamental task in digital pathology analysis. However, deep-learning-based nuclei segmentation methods often suffer from limited annotations. This paper proposes a realistic data augmentation method for nuclei segmentation, named InsMix, that follows a Copy-Paste-Smooth principle and performs morphology-constrained generative instance augmentation. Specifically, we propose morphology constraints that enable the augmented images to acquire luxuriant information about nuclei while maintaining their morphology characteristics (e.g., geometry and location). To fully exploit the pixel redundancy of the background and improve the model's robustness, we further propose a background perturbation method, which randomly shuffles the background patches without disordering the original nuclei distribution. To achieve contextual consistency between original and template instances, a smooth-GAN is designed with a foreground similarity encoder (FSE) and a triplet loss. We validated the proposed method on two datasets, i.e., Kumar and CPS datasets. Experimental results demonstrate the effectiveness of each component and the superior performance achieved by our method to the state-of-the-art methods.
TAKT: Target-Aware Knowledge Transfer for Whole Slide Image ClassificationConghao Xiong, Yi Lin, Hao Chen et al.
Transferring knowledge from a source domain to a target domain can be crucial for whole slide image classification, since the number of samples in a dataset is often limited due to high annotation costs. However, domain shift and task discrepancy between datasets can hinder effective knowledge transfer. In this paper, we propose a Target-Aware Knowledge Transfer framework, employing a teacher-student paradigm. Our framework enables the teacher model to learn common knowledge from the source and target domains by actively incorporating unlabelled target images into the training of the teacher model. The teacher bag features are subsequently adapted to supervise the training of the student model on the target domain. Despite incorporating the target features during training, the teacher model tends to overlook them under the inherent domain shift and task discrepancy. To alleviate this, we introduce a target-aware feature alignment module to establish a transferable latent relationship between the source and target features by solving the optimal transport problem. Experimental results show that models employing knowledge transfer outperform those trained from scratch, and our method achieves state-of-the-art performance among other knowledge transfer methods on various datasets, including TCGA-RCC, TCGA-NSCLC, and Camelyon16.
2.8CVMar 23, 2023
Exploring Visual Prompts for Whole Slide Image Classification with Multiple Instance LearningYi Lin, Zhongchen Zhao, Zhengjie ZHU et al.
Multiple instance learning (MIL) has emerged as a popular method for classifying histopathology whole slide images (WSIs). However, existing approaches typically rely on pre-trained models from large natural image datasets, such as ImageNet, to generate instance features, which can be sub-optimal due to the significant differences between natural images and histopathology images that lead to a domain shift. In this paper, we present a novel, simple yet effective method for learning domain-specific knowledge transformation from pre-trained models to histopathology images. Our approach entails using a prompt component to assist the pre-trained model in discerning differences between the pre-trained dataset and the target histopathology dataset, resulting in improved performance of MIL models. We validate our method on two publicly available datasets, Camelyon16 and TCGA-NSCLC. Extensive experimental results demonstrate the significant performance improvement of our method for different MIL models and backbones. Upon publication of this paper, we will release the source code for our method.
12.1CVMar 22, 2023
Label-Efficient Deep Learning in Medical Image Analysis: Challenges and Future DirectionsCheng Jin, Zhengrui Guo, Yi Lin et al.
Deep learning has significantly advanced medical imaging analysis (MIA), achieving state-of-the-art performance across diverse clinical tasks. However, its success largely depends on large-scale, high-quality labeled datasets, which are costly and time-consuming to obtain due to the need for expert annotation. To mitigate this limitation, label-efficient deep learning methods have emerged to improve model performance under limited supervision by leveraging labeled, unlabeled, and weakly labeled data. In this survey, we systematically review over 350 peer-reviewed studies and present a comprehensive taxonomy of label-efficient learning methods in MIA. These methods are categorized into four labeling paradigms: no label, insufficient label, inexact label, and label refinement. For each category, we analyze representative techniques across imaging modalities and clinical applications, highlighting shared methodological principles and task-specific adaptations. We also examine the growing role of health foundation models (HFMs) in enabling label-efficient learning through large-scale pre-training and transfer learning, enhancing the use of limited annotations in downstream tasks. Finally, we identify current challenges and future directions to facilitate the translation of label-efficient learning from research promise to everyday clinical care.
16.8CVApr 3, 2023
Disorder-invariant Implicit Neural RepresentationHao Zhu, Shaowen Xie, Zhen Liu et al.
Implicit neural representation (INR) characterizes the attributes of a signal as a function of corresponding coordinates which emerges as a sharp weapon for solving inverse problems. However, the expressive power of INR is limited by the spectral bias in the network training. In this paper, we find that such a frequency-related problem could be greatly solved by re-arranging the coordinates of the input signal, for which we propose the disorder-invariant implicit neural representation (DINER) by augmenting a hash-table to a traditional INR backbone. Given discrete signals sharing the same histogram of attributes and different arrangement orders, the hash-table could project the coordinates into the same distribution for which the mapped signal can be better modeled using the subsequent INR network, leading to significantly alleviated spectral bias. Furthermore, the expressive power of the DINER is determined by the width of the hash-table. Different width corresponds to different geometrical elements in the attribute space, \textit{e.g.}, 1D curve, 2D curved-plane and 3D curved-volume when the width is set as $1$, $2$ and $3$, respectively. More covered areas of the geometrical elements result in stronger expressive power. Experiments not only reveal the generalization of the DINER for different INR backbones (MLP vs. SIREN) and various tasks (image/video representation, phase retrieval, refractive index recovery, and neural radiance field optimization) but also show the superiority over the state-of-the-art algorithms both in quality and speed. \textit{Project page:} \url{https://ezio77.github.io/DINER-website/}
Efficient Implicit Neural Reconstruction Using LiDARDongyu Yan, Xiaoyang Lyu, Jieqi Shi et al.
Modeling scene geometry using implicit neural representation has revealed its advantages in accuracy, flexibility, and low memory usage. Previous approaches have demonstrated impressive results using color or depth images but still have difficulty handling poor light conditions and large-scale scenes. Methods taking global point cloud as input require accurate registration and ground truth coordinate labels, which limits their application scenarios. In this paper, we propose a new method that uses sparse LiDAR point clouds and rough odometry to reconstruct fine-grained implicit occupancy field efficiently within a few minutes. We introduce a new loss function that supervises directly in 3D space without 2D rendering, avoiding information loss. We also manage to refine poses of input frames in an end-to-end manner, creating consistent geometry without global point cloud registration. As far as we know, our method is the first to reconstruct implicit scene representation from LiDAR-only input. Experiments on synthetic and real-world datasets, including indoor and outdoor scenes, prove that our method is effective, efficient, and accurate, obtaining comparable results with existing methods using dense input.
STELA: A Real-Time Scene Text Detector with Learned AnchorLinjie Deng, Yanxiang Gong, Xinchen Lu et al.
To achieve high coverage of target boxes, a normal strategy of conventional one-stage anchor-based detectors is to utilize multiple priors at each spatial position, especially in scene text detection tasks. In this work, we present a simple and intuitive method for multi-oriented text detection where each location of feature maps only associates with one reference box. The idea is inspired from the twostage R-CNN framework that can estimate the location of objects with any shape by using learned proposals. The aim of our method is to integrate this mechanism into a onestage detector and employ the learned anchor which is obtained through a regression operation to replace the original one into the final predictions. Based on RetinaNet, our method achieves competitive performances on several public benchmarks with a totally real-time efficiency (26:5fps at 800p), which surpasses all of anchor-based scene text detectors. In addition, with less attention on anchor design, we believe our method is easy to be applied on other analogous detection tasks. The code will publicly available at https://github.com/xhzdeng/stela.
Detecting Multi-Oriented Text with Corner-based Region ProposalsLinjie Deng, Yanxiang Gong, Yi Lin et al.
Previous approaches for scene text detection usually rely on manually defined sliding windows. This work presents an intuitive two-stage region-based method to detect multi-oriented text without any prior knowledge regarding the textual shape. In the first stage, we estimate the possible locations of text instances by detecting and linking corners instead of shifting a set of default anchors. The quadrilateral proposals are geometry adaptive, which allows our method to cope with various text aspect ratios and orientations. In the second stage, we design a new pooling layer named Dual-RoI Pooling which embeds data augmentation inside the region-wise subnetwork for more robust classification and regression over these proposals. Experimental results on public benchmarks confirm that the proposed method is capable of achieving comparable performance with state-of-the-art methods. The code is publicly available at https://github.com/xhzdeng/crpn
7.6CVMar 13, 2024
Iterative Online Image Synthesis via Diffusion Model for Imbalanced ClassificationShuhan Li, Yi Lin, Hao Chen et al.
Accurate and robust classification of diseases is important for proper diagnosis and treatment. However, medical datasets often face challenges related to limited sample sizes and inherent imbalanced distributions, due to difficulties in data collection and variations in disease prevalence across different types. In this paper, we introduce an Iterative Online Image Synthesis (IOIS) framework to address the class imbalance problem in medical image classification. Our framework incorporates two key modules, namely Online Image Synthesis (OIS) and Accuracy Adaptive Sampling (AAS), which collectively target the imbalance classification issue at both the instance level and the class level. The OIS module alleviates the data insufficiency problem by generating representative samples tailored for online training of the classifier. On the other hand, the AAS module dynamically balances the synthesized samples among various classes, targeting those with low training accuracy. To evaluate the effectiveness of our proposed method in addressing imbalanced classification, we conduct experiments on the HAM10000 and APTOS datasets. The results obtained demonstrate the superiority of our approach over state-of-the-art methods as well as the effectiveness of each component. The source code will be released upon acceptance.
3.6CVJan 9, 2025
Emergence of Painting Ability via Recognition-Driven EvolutionYi Lin, Lin Gu, Ziteng Cui et al.
From Paleolithic cave paintings to Impressionism, human painting has evolved to depict increasingly complex and detailed scenes, conveying more nuanced messages. This paper attempts to emerge this artistic capability by simulating the evolutionary pressures that enhance visual communication efficiency. Specifically, we present a model with a stroke branch and a palette branch that together simulate human-like painting. The palette branch learns a limited colour palette, while the stroke branch parameterises each stroke using Bézier curves to render an image, subsequently evaluated by a high-level recognition module. We quantify the efficiency of visual communication by measuring the recognition accuracy achieved with machine vision. The model then optimises the control points and colour choices for each stroke to maximise recognition accuracy with minimal strokes and colours. Experimental results show that our model achieves superior performance in high-level recognition tasks, delivering artistic expression and aesthetic appeal, especially in abstract sketches. Additionally, our approach shows promise as an efficient bit-level image compression technique, outperforming traditional methods.
8.7CVMar 19, 2024
Prompt-Guided Adaptive Model Transformation for Whole Slide Image ClassificationYi Lin, Zhengjie Zhu, Kwang-Ting Cheng et al.
Multiple instance learning (MIL) has emerged as a popular method for classifying histopathology whole slide images (WSIs). Existing approaches typically rely on frozen pre-trained models to extract instance features, neglecting the substantial domain shift between pre-training natural and histopathological images. To address this issue, we propose PAMT, a novel Prompt-guided Adaptive Model Transformation framework that enhances MIL classification performance by seamlessly adapting pre-trained models to the specific characteristics of histopathology data. To capture the intricate histopathology distribution, we introduce Representative Patch Sampling (RPS) and Prototypical Visual Prompt (PVP) to reform the input data, building a compact while informative representation. Furthermore, to narrow the domain gap, we introduce Adaptive Model Transformation (AMT) that integrates adapter blocks within the feature extraction pipeline, enabling the pre-trained models to learn domain-specific features. We rigorously evaluate our approach on two publicly available datasets, Camelyon16 and TCGA-NSCLC, showcasing substantial improvements across various MIL models. Our findings affirm the potential of PAMT to set a new benchmark in WSI classification, underscoring the value of a targeted reprogramming approach.
Rethinking Boundary Detection in Deep Learning Models for Medical Image SegmentationYi Lin, Dong Zhang, Xiao Fang et al.
Medical image segmentation is a fundamental task in the community of medical image analysis. In this paper, a novel network architecture, referred to as Convolution, Transformer, and Operator (CTO), is proposed. CTO employs a combination of Convolutional Neural Networks (CNNs), Vision Transformer (ViT), and an explicit boundary detection operator to achieve high recognition accuracy while maintaining an optimal balance between accuracy and efficiency. The proposed CTO follows the standard encoder-decoder segmentation paradigm, where the encoder network incorporates a popular CNN backbone for capturing local semantic information, and a lightweight ViT assistant for integrating long-range dependencies. To enhance the learning capacity on boundary, a boundary-guided decoder network is proposed that uses a boundary mask obtained from a dedicated boundary detection operator as explicit supervision to guide the decoding learning process. The performance of the proposed method is evaluated on six challenging medical image segmentation datasets, demonstrating that CTO achieves state-of-the-art accuracy with a competitive model complexity.
12.8ROFeb 24, 2022
Bubble Planner: Planning High-speed Smooth Quadrotor Trajectories using Receding CorridorsYunfan Ren, Fangcheng Zhu, Wenyi Liu et al.
Quadrotors are agile platforms. With human experts, they can perform extremely high-speed flights in cluttered environments. However, fully autonomous flight at high speed remains a significant challenge. In this work, we propose a motion planning algorithm based on the corridor-constrained minimum control effort trajectory optimization (MINCO) framework. Specifically, we use a series of overlapping spheres to represent the free space of the environment and propose two novel designs that enable the algorithm to plan high-speed quadrotor trajectories in real-time. One is a sampling-based corridor generation method that generates spheres with large overlapped areas (hence overall corridor size) between two neighboring spheres. The second is a Receding Horizon Corridors (RHC) strategy, where part of the previously generated corridor is reused in each replan. Together, these two designs enlarge the corridor spaces in accordance with the quadrotor's current state and hence allow the quadrotor to maneuver at high speeds. We benchmark our algorithm against other state-of-the-art planning methods to show its superiority in simulation. Comprehensive ablation studies are also conducted to show the necessity of the two designs. The proposed method is finally evaluated on an autonomous LiDAR-navigated quadrotor UAV in woods environments, achieving flight speeds over 13.7 m/s without any prior map of the environment or external localization facility.
16.1IVFeb 10, 2022
Deep Learning for Computational Cytology: A SurveyHao Jiang, Yanning Zhou, Yi Lin et al.
Computational cytology is a critical, rapid-developing, yet challenging topic in the field of medical image computing which analyzes the digitized cytology image by computer-aided technologies for cancer screening. Recently, an increasing number of deep learning (DL) algorithms have made significant progress in medical image analysis, leading to the boosting publications of cytological studies. To investigate the advanced methods and comprehensive applications, we survey more than 120 publications of DL-based cytology image analysis in this article. We first introduce various deep learning methods, including fully supervised, weakly supervised, unsupervised, and transfer learning. Then, we systematically summarize the public datasets, evaluation metrics, versatile cytology image analysis applications including classification, detection, segmentation, and other related tasks. Finally, we discuss current challenges and potential research directions of computational cytology.
4.3SDNov 4, 2021
Speech recognition for air traffic control via feature learning and end-to-end trainingPeng Fan, Dongyue Guo, Yi Lin et al.
In this work, we propose a new automatic speech recognition (ASR) system based on feature learning and an end-to-end training procedure for air traffic control (ATC) systems. The proposed model integrates the feature learning block, recurrent neural network (RNN), and connectionist temporal classification loss to build an end-to-end ASR model. Facing the complex environments of ATC speech, instead of the handcrafted features, a learning block is designed to extract informative features from raw waveforms for acoustic modeling. Both the SincNet and 1D convolution blocks are applied to process the raw waveforms, whose outputs are concatenated to the RNN layers for the temporal modeling. Thanks to the ability to learn representations from raw waveforms, the proposed model can be optimized in a complete end-to-end manner, i.e., from waveform to text. Finally, the multilingual issue in the ATC domain is also considered to achieve the ASR task by constructing a combined vocabulary of Chinese characters and English letters. The proposed approach is validated on a multilingual real-world corpus (ATCSpeech), and the experimental results demonstrate that the proposed approach outperforms other baselines, achieving a 6.9\% character error rate.
1.6CLFeb 17, 2021
ATCSpeechNet: A multilingual end-to-end speech recognition framework for air traffic control systemsYi Lin, Bo Yang, Linchao Li et al.
In this paper, a multilingual end-to-end framework, called as ATCSpeechNet, is proposed to tackle the issue of translating communication speech into human-readable text in air traffic control (ATC) systems. In the proposed framework, we focus on integrating the multilingual automatic speech recognition (ASR) into one model, in which an end-to-end paradigm is developed to convert speech waveform into text directly, without any feature engineering or lexicon. In order to make up for the deficiency of the handcrafted feature engineering caused by ATC challenges, a speech representation learning (SRL) network is proposed to capture robust and discriminative speech representations from the raw wave. The self-supervised training strategy is adopted to optimize the SRL network from unlabeled data, and further to predict the speech features, i.e., wave-to-feature. An end-to-end architecture is improved to complete the ASR task, in which a grapheme-based modeling unit is applied to address the multilingual ASR issue. Facing the problem of small transcribed samples in the ATC domain, an unsupervised approach with mask prediction is applied to pre-train the backbone network of the ASR model on unlabeled data by a feature-to-feature process. Finally, by integrating the SRL with ASR, an end-to-end multilingual ASR framework is formulated in a supervised manner, which is able to translate the raw wave into text in one model, i.e., wave-to-text. Experimental results on the ATCSpeech corpus demonstrate that the proposed approach achieves a high performance with a very small labeled corpus and less resource consumption, only 4.20% label error rate on the 58-hour transcribed corpus. Compared to the baseline model, the proposed approach obtains over 100% relative performance improvement which can be further enhanced with the increasing of the size of the transcribed samples.
9.8SDFeb 16, 2021
Improving speech recognition models with small samples for air traffic control systemsYi Lin, Qin Li, Bo Yang et al.
In the domain of air traffic control (ATC) systems, efforts to train a practical automatic speech recognition (ASR) model always faces the problem of small training samples since the collection and annotation of speech samples are expert- and domain-dependent task. In this work, a novel training approach based on pretraining and transfer learning is proposed to address this issue, and an improved end-to-end deep learning model is developed to address the specific challenges of ASR in the ATC domain. An unsupervised pretraining strategy is first proposed to learn speech representations from unlabeled samples for a certain dataset. Specifically, a masking strategy is applied to improve the diversity of the sample without losing their general patterns. Subsequently, transfer learning is applied to fine-tune a pretrained or other optimized baseline models to finally achieves the supervised ASR task. By virtue of the common terminology used in the ATC domain, the transfer learning task can be regarded as a sub-domain adaption task, in which the transferred model is optimized using a joint corpus consisting of baseline samples and new transcribed samples from the target dataset. This joint corpus construction strategy enriches the size and diversity of the training samples, which is important for addressing the issue of the small transcribed corpus. In addition, speed perturbation is applied to augment the new transcribed samples to further improve the quality of the speech corpus. Three real ATC datasets are used to validate the proposed ASR model and training strategies. The experimental results demonstrate that the ASR performance is significantly improved on all three datasets, with an absolute character error rate only one-third of that achieved through the supervised training. The applicability of the proposed strategies to other ASR approaches is also validated.
A Hierarchical Feature Constraint to Camouflage Medical Adversarial AttacksQingsong Yao, Zecheng He, Yi Lin et al.
Deep neural networks (DNNs) for medical images are extremely vulnerable to adversarial examples (AEs), which poses security concerns on clinical decision making. Luckily, medical AEs are also easy to detect in hierarchical feature space per our study herein. To better understand this phenomenon, we thoroughly investigate the intrinsic characteristic of medical AEs in feature space, providing both empirical evidence and theoretical explanations for the question: why are medical adversarial attacks easy to detect? We first perform a stress test to reveal the vulnerability of deep representations of medical images, in contrast to natural images. We then theoretically prove that typical adversarial attacks to binary disease diagnosis network manipulate the prediction by continuously optimizing the vulnerable representations in a fixed direction, resulting in outlier features that make medical AEs easy to detect. However, this vulnerability can also be exploited to hide the AEs in the feature space. We propose a novel hierarchical feature constraint (HFC) as an add-on to existing adversarial attacks, which encourages the hiding of the adversarial representation within the normal feature distribution. We evaluate the proposed method on two public medical image datasets, namely {Fundoscopy} and {Chest X-Ray}. Experimental results demonstrate the superiority of our adversarial attack method as it bypasses an array of state-of-the-art adversarial detectors more easily than competing attack methods, supporting that the great vulnerability of medical features allows an attacker more room to manipulate the adversarial representations.
Hybrid Attention for Automatic Segmentation of Whole Fetal Head in Prenatal Ultrasound VolumesXin Yang, Xu Wang, Yi Wang et al.
Background and Objective: Biometric measurements of fetal head are important indicators for maternal and fetal health monitoring during pregnancy. 3D ultrasound (US) has unique advantages over 2D scan in covering the whole fetal head and may promote the diagnoses. However, automatically segmenting the whole fetal head in US volumes still pends as an emerging and unsolved problem. The challenges that automated solutions need to tackle include the poor image quality, boundary ambiguity, long-span occlusion, and the appearance variability across different fetal poses and gestational ages. In this paper, we propose the first fully-automated solution to segment the whole fetal head in US volumes. Methods: The segmentation task is firstly formulated as an end-to-end volumetric mapping under an encoder-decoder deep architecture. We then combine the segmentor with a proposed hybrid attention scheme (HAS) to select discriminative features and suppress the non-informative volumetric features in a composite and hierarchical way. With little computation overhead, HAS proves to be effective in addressing boundary ambiguity and deficiency. To enhance the spatial consistency in segmentation, we further organize multiple segmentors in a cascaded fashion to refine the results by revisiting context in the prediction of predecessors. Results: Validated on a large dataset collected from 100 healthy volunteers, our method presents superior segmentation performance (DSC (Dice Similarity Coefficient), 96.05%), remarkable agreements with experts. With another 156 volumes collected from 52 volunteers, we ahieve high reproducibilities (mean standard deviation 11.524 mL) against scan variations. Conclusion: This is the first investigation about whole fetal head segmentation in 3D US. Our method is promising to be a feasible solution in assisting the volumetric US-based prenatal studies.
1.0CLNov 26, 2019
ATCSpeech: a multilingual pilot-controller speech corpus from real Air Traffic Control environmentBo Yang, Xianlong Tan, Zhengmao Chen et al.
Automatic Speech Recognition (ASR) is greatly developed in recent years, which expedites many applications on other fields. For the ASR research, speech corpus is always an essential foundation, especially for the vertical industry, such as Air Traffic Control (ATC). There are some speech corpora for common applications, public or paid. However, for the ATC, it is difficult to collect raw speeches from real systems due to safety issues. More importantly, for a supervised learning task like ASR, annotating the transcription is a more laborious work, which hugely restricts the prospect of ASR application. In this paper, a multilingual speech corpus (ATCSpeech) from real ATC systems, including accented Mandarin Chinese and English, is built and released to encourage the non-commercial ASR research in ATC domain. The corpus is detailly introduced from the perspective of data amount, speaker gender and role, speech quality and other attributions. In addition, the performance of our baseline ASR models is also reported. A community edition for our speech database can be applied and used under a special contrast. To our best knowledge, this is the first work that aims at building a real and multilingual ASR corpus for the air traffic related research.