Michael Huy Cuong Pham

h-index9
2papers
443citations

2 Papers

7.6CVJul 15, 2024Code
Spatio-temporal neural distance fields for conditional generative modeling of the heart

Kristine Sørensen, Paula Diez, Jan Margeta et al.

The rhythmic pumping motion of the heart stands as a cornerstone in life, as it circulates blood to the entire human body through a series of carefully timed contractions of the individual chambers. Changes in the size, shape and movement of the chambers can be important markers for cardiac disease and modeling this in relation to clinical demography or disease is therefore of interest. Existing methods for spatio-temporal modeling of the human heart require shape correspondence over time or suffer from large memory requirements, making it difficult to use for complex anatomies. We introduce a novel conditional generative model, where the shape and movement is modeled implicitly in the form of a spatio-temporal neural distance field and conditioned on clinical demography. The model is based on an auto-decoder architecture and aims to disentangle the individual variations from that related to the clinical demography. It is tested on the left atrium (including the left atrial appendage), where it outperforms current state-of-the-art methods for anatomical sequence completion and generates synthetic sequences that realistically mimics the shape and motion of the real left atrium. In practice, this means we can infer functional measurements from a static image, generate synthetic populations with specified demography or disease and investigate how non-imaging clinical data effect the shape and motion of cardiac anatomies.

3.0IVMay 1, 2023
CNN-based fully automatic mitral valve extraction using CT images and existence probability maps

Yukiteru Masuda, Ryo Ishikawa, Toru Tanaka et al.

Accurate extraction of mitral valve shape from clinical tomographic images acquired in patients has proven useful for planning surgical and interventional mitral valve treatments. However, manual extraction of the mitral valve shape is laborious, and the existing automatic extraction methods have not been sufficiently accurate. In this paper, we propose a fully automated method of extracting mitral valve shape from computed tomography (CT) images for the all phases of the cardiac cycle. This method extracts the mitral valve shape based on DenseNet using both the original CT image and the existence probability maps of the mitral valve area inferred by U-Net as input. A total of 1585 CT images from 204 patients with various cardiac diseases including mitral regurgitation (MR) were collected and manually annotated for mitral valve region. The proposed method was trained and evaluated by 10-fold cross validation using the collected data and was compared with the method without the existence probability maps. The mean error of shape extraction error in the proposed method is 0.88 mm, which is an improvement of 0.32 mm compared with the method without the existence probability maps.