Kookjin Lee

LG
h-index12
38papers
634citations
Novelty52%
AI Score55

38 Papers

NAJun 5, 2019
Model reduction of dynamical systems on nonlinear manifolds using deep convolutional autoencoders

Kookjin Lee, Kevin Carlberg

Nearly all model-reduction techniques project the governing equations onto a linear subspace of the original state space. Such subspaces are typically computed using methods such as balanced truncation, rational interpolation, the reduced-basis method, and (balanced) POD. Unfortunately, restricting the state to evolve in a linear subspace imposes a fundamental limitation to the accuracy of the resulting reduced-order model (ROM). In particular, linear-subspace ROMs can be expected to produce low-dimensional models with high accuracy only if the problem admits a fast decaying Kolmogorov $n$-width (e.g., diffusion-dominated problems). Unfortunately, many problems of interest exhibit a slowly decaying Kolmogorov $n$-width (e.g., advection-dominated problems). To address this, we propose a novel framework for projecting dynamical systems onto nonlinear manifolds using minimum-residual formulations at the time-continuous and time-discrete levels; the former leads to manifold Galerkin projection, while the latter leads to manifold least-squares Petrov--Galerkin (LSPG) projection. We perform analyses that provide insight into the relationship between these proposed approaches and classical linear-subspace reduced-order models; we also derive a posteriori discrete-time error bounds for the proposed approaches. In addition, we propose a computationally practical approach for computing the nonlinear manifold, which is based on convolutional autoencoders from deep learning. Finally, we demonstrate the ability of the method to significantly outperform even the optimal linear-subspace ROM on benchmark advection-dominated problems, thereby demonstrating the method's ability to overcome the intrinsic $n$-width limitations of linear subspaces.

LGJul 13, 2022Code
AdamNODEs: When Neural ODE Meets Adaptive Moment Estimation

Suneghyeon Cho, Sanghyun Hong, Kookjin Lee et al.

Recent work by Xia et al. leveraged the continuous-limit of the classical momentum accelerated gradient descent and proposed heavy-ball neural ODEs. While this model offers computational efficiency and high utility over vanilla neural ODEs, this approach often causes the overshooting of internal dynamics, leading to unstable training of a model. Prior work addresses this issue by using ad-hoc approaches, e.g., bounding the internal dynamics using specific activation functions, but the resulting models do not satisfy the exact heavy-ball ODE. In this work, we propose adaptive momentum estimation neural ODEs (AdamNODEs) that adaptively control the acceleration of the classical momentum-based approach. We find that its adjoint states also satisfy AdamODE and do not require ad-hoc solutions that the prior work employs. In evaluation, we show that AdamNODEs achieve the lowest training loss and efficacy over existing neural ODEs. We also show that AdamNODEs have better training stability than classical momentum-based neural ODEs. This result sheds some light on adapting the techniques proposed in the optimization community to improving the training and inference of neural ODEs further. Our code is available at https://github.com/pmcsh04/AdamNODE.

NAMay 17, 2016
A Preconditioned Low-Rank Projection Method with a Rank-Reduction Scheme for Stochastic Partial Differential Equations

Kookjin Lee, Howard C. Elman

In this study, we consider the numerical solution of large systems of linear equations obtained from the stochastic Galerkin formulation of stochastic partial differential equations. We propose an iterative algorithm that exploits the Kronecker product structure of the linear systems. The proposed algorithm efficiently approximates the solutions in low-rank tensor format. Using standard Krylov subspace methods for the data in tensor format is computationally prohibitive due to the rapid growth of tensor ranks during the iterations. To keep tensor ranks low over the entire iteration process, we devise a rank-reduction scheme that can be combined with the iterative algorithm. The proposed rank-reduction scheme identifies an important subspace in the stochastic domain and compresses tensors of high rank on-the-fly during the iterations. The proposed reduction scheme is a multilevel method in that the important subspace can be identified inexpensively in a coarse spatial grid setting. The efficiency of the proposed method is illustrated by numerical experiments on benchmark problems.

NAOct 16, 2017
A Low-rank solver for the Navier--Stokes equations with uncertain viscosity

Kookjin Lee, Howard C. Elman, Bedřich Sousedík

We study an iterative low-rank approximation method for the solution of the steady-state stochastic Navier--Stokes equations with uncertain viscosity. The method is based on linearization schemes using Picard and Newton iterations and stochastic finite element discretizations of the linearized problems. For computing the low-rank approximate solution, we adapt the nonlinear iterations to an inexact and low-rank variant, where the solution of the linear system at each nonlinear step is approximated by a quantity of low rank. This is achieved by using a tensor variant of the GMRES method as a solver for the linear systems. We explore the inexact low-rank nonlinear iteration with a set of benchmark problems, using a model of flow over an obstacle, under various configurations characterizing the statistical features of the uncertain viscosity, and we demonstrate its effectiveness by extensive numerical experiments.

NAJan 5, 2017
Stochastic Least-Squares Petrov-Galerkin Method for Parameterized Linear Systems

Kookjin Lee, Kevin Carlberg, Howard C. Elman

We consider the numerical solution of parameterized linear systems where the system matrix, the solution, and the right-hand side are parameterized by a set of uncertain input parameters. We explore spectral methods in which the solutions are approximated in a chosen finite-dimensional subspace. It has been shown that the stochastic Galerkin projection technique fails to minimize any measure of the solution error [20]. As a remedy for this, we propose a novel stochastic least-squares Petrov--Galerkin (LSPG) method. The proposed method is optimal in the sense that it produces the solution that minimizes a weighted l2-norm of the residual over all solutions in a given finite-dimensional subspace. Moreover, the method can be adapted to minimize the solution error in different weighted l2-norms by simply applying a weighting function within the least-squares formulation. In addition, a goal-oriented semi-norm induced by an output quantity of interest can be minimized by defining a weighting function as a linear functional of the solution. We establish optimality and error bounds for the proposed method, and extensive numerical experiments show that the weighted LSPG methods outperforms other spectral methods in minimizing corresponding target weighted norms.

LGOct 14, 2023
Hypernetwork-based Meta-Learning for Low-Rank Physics-Informed Neural Networks

Woojin Cho, Kookjin Lee, Donsub Rim et al.

In various engineering and applied science applications, repetitive numerical simulations of partial differential equations (PDEs) for varying input parameters are often required (e.g., aircraft shape optimization over many design parameters) and solvers are required to perform rapid execution. In this study, we suggest a path that potentially opens up a possibility for physics-informed neural networks (PINNs), emerging deep-learning-based solvers, to be considered as one such solver. Although PINNs have pioneered a proper integration of deep-learning and scientific computing, they require repetitive time-consuming training of neural networks, which is not suitable for many-query scenarios. To address this issue, we propose a lightweight low-rank PINNs containing only hundreds of model parameters and an associated hypernetwork-based meta-learning algorithm, which allows efficient approximation of solutions of PDEs for varying ranges of PDE input parameters. Moreover, we show that the proposed method is effective in overcoming a challenging issue, known as "failure modes" of PINNs.

LGNov 22, 2022
Time Series Forecasting with Hypernetworks Generating Parameters in Advance

Jaehoon Lee, Chan Kim, Gyumin Lee et al.

Forecasting future outcomes from recent time series data is not easy, especially when the future data are different from the past (i.e. time series are under temporal drifts). Existing approaches show limited performances under data drifts, and we identify the main reason: It takes time for a model to collect sufficient training data and adjust its parameters for complicated temporal patterns whenever the underlying dynamics change. To address this issue, we study a new approach; instead of adjusting model parameters (by continuously re-training a model on new data), we build a hypernetwork that generates other target models' parameters expected to perform well on the future data. Therefore, we can adjust the model parameters beforehand (if the hypernetwork is correct). We conduct extensive experiments with 6 target models, 6 baselines, and 4 datasets, and show that our HyperGPA outperforms other baselines.

LGAug 18, 2024
Parameterized Physics-informed Neural Networks for Parameterized PDEs

Woojin Cho, Minju Jo, Haksoo Lim et al.

Complex physical systems are often described by partial differential equations (PDEs) that depend on parameters such as the Reynolds number in fluid mechanics. In applications such as design optimization or uncertainty quantification, solutions of those PDEs need to be evaluated at numerous points in the parameter space. While physics-informed neural networks (PINNs) have emerged as a new strong competitor as a surrogate, their usage in this scenario remains underexplored due to the inherent need for repetitive and time-consuming training. In this paper, we address this problem by proposing a novel extension, parameterized physics-informed neural networks (P$^2$INNs). P$^2$INNs enable modeling the solutions of parameterized PDEs via explicitly encoding a latent representation of PDE parameters. With the extensive empirical evaluation, we demonstrate that P$^2$INNs outperform the baselines both in accuracy and parameter efficiency on benchmark 1D and 2D parameterized PDEs and are also effective in overcoming the known "failure modes".

LGOct 10, 2022
Mining Causality from Continuous-time Dynamics Models: An Application to Tsunami Forecasting

Fan Wu, Sanghyun Hong, Donsub Rim et al.

Continuous-time dynamics models, such as neural ordinary differential equations, have enabled the modeling of underlying dynamics in time-series data and accurate forecasting. However, parameterization of dynamics using a neural network makes it difficult for humans to identify causal structures in the data. In consequence, this opaqueness hinders the use of these models in the domains where capturing causal relationships carries the same importance as accurate predictions, e.g., tsunami forecasting. In this paper, we address this challenge by proposing a mechanism for mining causal structures from continuous-time models. We train models to capture the causal structure by enforcing sparsity in the weights of the input layers of the dynamics models. We first verify the effectiveness of our method in the scenario where the exact causal-structures of time-series are known as a priori. We next apply our method to a real-world problem, namely tsunami forecasting, where the exact causal-structures are difficult to characterize. Experimental results show that the proposed method is effective in learning physically-consistent causal relationships while achieving high forecasting accuracy.

NANov 2, 2018
Inexact Methods for Symmetric Stochastic Eigenvalue Problems

Kookjin Lee, Bedřich Sousedík

We study two inexact methods for solutions of random eigenvalue problems in the context of spectral stochastic finite elements. In particular, given a parameter-dependent, symmetric matrix operator, the methods solve for eigenvalues and eigenvectors represented using polynomial chaos expansions. Both methods are based on the stochastic Galerkin formulation of the eigenvalue problem and they exploit its Kronecker-product structure. The first method is an inexact variant of the stochastic inverse subspace iteration [B. Soused\'ık, H. C. Elman, SIAM/ASA Journal on Uncertainty Quantification 4(1), pp. 163--189, 2016]. The second method is based on an inexact variant of Newton iteration. In both cases, the problems are formulated so that the associated stochastic Galerkin matrices are symmetric, and the corresponding linear problems are solved using preconditioned Krylov subspace methods with several novel hierarchical preconditioners. The accuracy of the methods is compared with that of Monte Carlo and stochastic collocation, and the effectiveness of the methods is illustrated by numerical experiments.

LGOct 1, 2022
Parameter-varying neural ordinary differential equations with partition-of-unity networks

Kookjin Lee, Nathaniel Trask

In this study, we propose parameter-varying neural ordinary differential equations (NODEs) where the evolution of model parameters is represented by partition-of-unity networks (POUNets), a mixture of experts architecture. The proposed variant of NODEs, synthesized with POUNets, learn a meshfree partition of space and represent the evolution of ODE parameters using sets of polynomials associated to each partition. We demonstrate the effectiveness of the proposed method for three important tasks: data-driven dynamics modeling of (1) hybrid systems, (2) switching linear dynamical systems, and (3) latent dynamics for dynamical systems with varying external forcing.

LGDec 19, 2023Code
Learning Flexible Body Collision Dynamics with Hierarchical Contact Mesh Transformer

Youn-Yeol Yu, Jeongwhan Choi, Woojin Cho et al.

Recently, many mesh-based graph neural network (GNN) models have been proposed for modeling complex high-dimensional physical systems. Remarkable achievements have been made in significantly reducing the solving time compared to traditional numerical solvers. These methods are typically designed to i) reduce the computational cost in solving physical dynamics and/or ii) propose techniques to enhance the solution accuracy in fluid and rigid body dynamics. However, it remains under-explored whether they are effective in addressing the challenges of flexible body dynamics, where instantaneous collisions occur within a very short timeframe. In this paper, we present Hierarchical Contact Mesh Transformer (HCMT), which uses hierarchical mesh structures and can learn long-range dependencies (occurred by collisions) among spatially distant positions of a body -- two close positions in a higher-level mesh correspond to two distant positions in a lower-level mesh. HCMT enables long-range interactions, and the hierarchical mesh structure quickly propagates collision effects to faraway positions. To this end, it consists of a contact mesh Transformer and a hierarchical mesh Transformer (CMT and HMT, respectively). Lastly, we propose a flexible body dynamics dataset, consisting of trajectories that reflect experimental settings frequently used in the display industry for product designs. We also compare the performance of several baselines using well-known benchmark datasets. Our results show that HCMT provides significant performance improvements over existing methods. Our code is available at https://github.com/yuyudeep/hcmt.

NANov 28, 2023
Reduced-order modeling for parameterized PDEs via implicit neural representations

Tianshu Wen, Kookjin Lee, Youngsoo Choi

We present a new data-driven reduced-order modeling approach to efficiently solve parametrized partial differential equations (PDEs) for many-query problems. This work is inspired by the concept of implicit neural representation (INR), which models physics signals in a continuous manner and independent of spatial/temporal discretization. The proposed framework encodes PDE and utilizes a parametrized neural ODE (PNODE) to learn latent dynamics characterized by multiple PDE parameters. PNODE can be inferred by a hypernetwork to reduce the potential difficulties in learning PNODE due to a complex multilayer perceptron (MLP). The framework uses an INR to decode the latent dynamics and reconstruct accurate PDE solutions. Further, a physics-informed loss is also introduced to correct the prediction of unseen parameter instances. Incorporating the physics-informed loss also enables the model to be fine-tuned in an unsupervised manner on unseen PDE parameters. A numerical experiment is performed on a two-dimensional Burgers equation with a large variation of PDE parameters. We evaluate the proposed method at a large Reynolds number and obtain up to speedup of O(10^3) and ~1% relative error to the ground truth values.

LGSep 5, 2024
Latent Space Energy-based Neural ODEs

Sheng Cheng, Deqian Kong, Jianwen Xie et al.

This paper introduces novel deep dynamical models designed to represent continuous-time sequences. Our approach employs a neural emission model to generate each data point in the time series through a non-linear transformation of a latent state vector. The evolution of these latent states is implicitly defined by a neural ordinary differential equation (ODE), with the initial state drawn from an informative prior distribution parameterized by an Energy-based model (EBM). This framework is extended to disentangle dynamic states from underlying static factors of variation, represented as time-invariant variables in the latent space. We train the model using maximum likelihood estimation with Markov chain Monte Carlo (MCMC) in an end-to-end manner. Experimental results on oscillating systems, videos and real-world state sequences (MuJoCo) demonstrate that our model with the learnable energy-based prior outperforms existing counterparts, and can generalize to new dynamic parameterization, enabling long-horizon predictions.

CVDec 2, 2025
Basis-Oriented Low-rank Transfer for Few-Shot and Test-Time Adaptation

Junghwan Park, Woojin Cho, Junhyuk Heo et al.

Adapting large pre-trained models to unseen tasks under tight data and compute budgets remains challenging. Meta-learning approaches explicitly learn good initializations, but they require an additional meta-training phase over many tasks, incur high training cost, and can be unstable. At the same time, the number of task-specific pre-trained models continues to grow, yet the question of how to transfer them to new tasks with minimal additional training remains relatively underexplored. We propose BOLT (Basis-Oriented Low-rank Transfer), a framework that reuses existing fine-tuned models not by merging weights, but instead by extracting an orthogonal, task-informed spectral basis and adapting within that subspace. In the offline phase, BOLT collects dominant singular directions from multiple task vectors and orthogonalizes them per layer to form reusable bases. In the online phase, we freeze these bases and train only a small set of diagonal coefficients per layer for the new task, yielding a rank-controlled update with very few trainable parameters. This design provides (i) a strong, training-free initialization for unseen tasks, obtained by pooling source-task coefficients, along with a lightweight rescaling step while leveraging the shared orthogonal bases, and (ii) a parameter-efficient fine-tuning (PEFT) path that, in our experiments, achieves robust performance compared to common PEFT baselines as well as a representative meta-learned initialization. Our results show that constraining adaptation to a task-informed orthogonal subspace provides an effective alternative for unseen-task transfer.

LGJul 7, 2021Code
Probabilistic partition of unity networks: clustering based deep approximation

Nat Trask, Mamikon Gulian, Andy Huang et al.

Partition of unity networks (POU-Nets) have been shown capable of realizing algebraic convergence rates for regression and solution of PDEs, but require empirical tuning of training parameters. We enrich POU-Nets with a Gaussian noise model to obtain a probabilistic generalization amenable to gradient-based minimization of a maximum likelihood loss. The resulting architecture provides spatial representations of both noiseless and noisy data as Gaussian mixtures with closed form expressions for variance which provides an estimator of local error. The training process yields remarkably sharp partitions of input space based upon correlation of function values. This classification of training points is amenable to a hierarchical refinement strategy that significantly improves the localization of the regression, allowing for higher-order polynomial approximation to be utilized. The framework scales more favorably to large data sets as compared to Gaussian process regression and allows for spatially varying uncertainty, leveraging the expressive power of deep neural networks while bypassing expensive training associated with other probabilistic deep learning methods. Compared to standard deep neural networks, the framework demonstrates hp-convergence without the use of regularizers to tune the localization of partitions. We provide benchmarks quantifying performance in high/low-dimensions, demonstrating that convergence rates depend only on the latent dimension of data within high-dimensional space. Finally, we introduce a new open-source data set of PDE-based simulations of a semiconductor device and perform unsupervised extraction of a physically interpretable reduced-order basis.

LGDec 7, 2023
Graph Convolutions Enrich the Self-Attention in Transformers!

Jeongwhan Choi, Hyowon Wi, Jayoung Kim et al.

Transformers, renowned for their self-attention mechanism, have achieved state-of-the-art performance across various tasks in natural language processing, computer vision, time-series modeling, etc. However, one of the challenges with deep Transformer models is the oversmoothing problem, where representations across layers converge to indistinguishable values, leading to significant performance degradation. We interpret the original self-attention as a simple graph filter and redesign it from a graph signal processing (GSP) perspective. We propose a graph-filter-based self-attention (GFSA) to learn a general yet effective one, whose complexity, however, is slightly larger than that of the original self-attention mechanism. We demonstrate that GFSA improves the performance of Transformers in various fields, including computer vision, natural language processing, graph-level tasks, speech recognition, and code classification.

LGApr 5, 2025
PIORF: Physics-Informed Ollivier-Ricci Flow for Long-Range Interactions in Mesh Graph Neural Networks

Youn-Yeol Yu, Jeongwhan Choi, Jaehyeon Park et al.

Recently, data-driven simulators based on graph neural networks have gained attention in modeling physical systems on unstructured meshes. However, they struggle with long-range dependencies in fluid flows, particularly in refined mesh regions. This challenge, known as the 'over-squashing' problem, hinders information propagation. While existing graph rewiring methods address this issue to some extent, they only consider graph topology, overlooking the underlying physical phenomena. We propose Physics-Informed Ollivier-Ricci Flow (PIORF), a novel rewiring method that combines physical correlations with graph topology. PIORF uses Ollivier-Ricci curvature (ORC) to identify bottleneck regions and connects these areas with nodes in high-velocity gradient nodes, enabling long-range interactions and mitigating over-squashing. Our approach is computationally efficient in rewiring edges and can scale to larger simulations. Experimental results on 3 fluid dynamics benchmark datasets show that PIORF consistently outperforms baseline models and existing rewiring methods, achieving up to 26.2 improvement.

LGJun 10, 2025
Thermodynamically Consistent Latent Dynamics Identification for Parametric Systems

Xiaolong He, Yeonjong Shin, Anthony Gruber et al.

We propose an efficient thermodynamics-informed latent space dynamics identification (tLaSDI) framework for the reduced-order modeling of parametric nonlinear dynamical systems. This framework integrates autoencoders for dimensionality reduction with newly developed parametric GENERIC formalism-informed neural networks (pGFINNs), which enable efficient learning of parametric latent dynamics while preserving key thermodynamic principles such as free energy conservation and entropy generation across the parameter space. To further enhance model performance, a physics-informed active learning strategy is incorporated, leveraging a greedy, residual-based error indicator to adaptively sample informative training data, outperforming uniform sampling at equivalent computational cost. Numerical experiments on the Burgers' equation and the 1D/1V Vlasov-Poisson equation demonstrate that the proposed method achieves up to 3,528x speed-up with 1-3% relative errors, and significant reduction in training (50-90%) and inference (57-61%) cost. Moreover, the learned latent space dynamics reveal the underlying thermodynamic behavior of the system, offering valuable insights into the physical-space dynamics.

CVFeb 20, 2024
PAC-FNO: Parallel-Structured All-Component Fourier Neural Operators for Recognizing Low-Quality Images

Jinsung Jeon, Hyundong Jin, Jonghyun Choi et al.

A standard practice in developing image recognition models is to train a model on a specific image resolution and then deploy it. However, in real-world inference, models often encounter images different from the training sets in resolution and/or subject to natural variations such as weather changes, noise types and compression artifacts. While traditional solutions involve training multiple models for different resolutions or input variations, these methods are computationally expensive and thus do not scale in practice. To this end, we propose a novel neural network model, parallel-structured and all-component Fourier neural operator (PAC-FNO), that addresses the problem. Unlike conventional feed-forward neural networks, PAC-FNO operates in the frequency domain, allowing it to handle images of varying resolutions within a single model. We also propose a two-stage algorithm for training PAC-FNO with a minimal modification to the original, downstream model. Moreover, the proposed PAC-FNO is ready to work with existing image recognition models. Extensively evaluating methods with seven image recognition benchmarks, we show that the proposed PAC-FNO improves the performance of existing baseline models on images with various resolutions by up to 77.1% and various types of natural variations in the images at inference.

LGDec 16, 2023
Operator-learning-inspired Modeling of Neural Ordinary Differential Equations

Woojin Cho, Seunghyeon Cho, Hyundong Jin et al.

Neural ordinary differential equations (NODEs), one of the most influential works of the differential equation-based deep learning, are to continuously generalize residual networks and opened a new field. They are currently utilized for various downstream tasks, e.g., image classification, time series classification, image generation, etc. Its key part is how to model the time-derivative of the hidden state, denoted dh(t)/dt. People have habitually used conventional neural network architectures, e.g., fully-connected layers followed by non-linear activations. In this paper, however, we present a neural operator-based method to define the time-derivative term. Neural operators were initially proposed to model the differential operator of partial differential equations (PDEs). Since the time-derivative of NODEs can be understood as a special type of the differential operator, our proposed method, called branched Fourier neural operator (BFNO), makes sense. In our experiments with general downstream tasks, our method significantly outperforms existing methods.

LGJun 15, 2025
PDEfuncta: Spectrally-Aware Neural Representation for PDE Solution Modeling

Minju Jo, Woojin Cho, Uvini Balasuriya Mudiyanselage et al.

Scientific machine learning often involves representing complex solution fields that exhibit high-frequency features such as sharp transitions, fine-scale oscillations, and localized structures. While implicit neural representations (INRs) have shown promise for continuous function modeling, capturing such high-frequency behavior remains a challenge-especially when modeling multiple solution fields with a shared network. Prior work addressing spectral bias in INRs has primarily focused on single-instance settings, limiting scalability and generalization. In this work, we propose Global Fourier Modulation (GFM), a novel modulation technique that injects high-frequency information at each layer of the INR through Fourier-based reparameterization. This enables compact and accurate representation of multiple solution fields using low-dimensional latent vectors. Building upon GFM, we introduce PDEfuncta, a meta-learning framework designed to learn multi-modal solution fields and support generalization to new tasks. Through empirical studies on diverse scientific problems, we demonstrate that our method not only improves representational quality but also shows potential for forward and inverse inference tasks without the need for retraining.

LGJun 11, 2025
Neural Functions for Learning Periodic Signal

Woojin Cho, Minju Jo, Kookjin Lee et al.

As function approximators, deep neural networks have served as an effective tool to represent various signal types. Recent approaches utilize multi-layer perceptrons (MLPs) to learn a nonlinear mapping from a coordinate to its corresponding signal, facilitating the learning of continuous neural representations from discrete data points. Despite notable successes in learning diverse signal types, coordinate-based MLPs often face issues of overfitting and limited generalizability beyond the training region, resulting in subpar extrapolation performance. This study addresses scenarios where the underlying true signals exhibit periodic properties, either spatially or temporally. We propose a novel network architecture, which extracts periodic patterns from measurements and leverages this information to represent the signal, thereby enhancing generalization and improving extrapolation performance. We demonstrate the efficacy of the proposed method through comprehensive experiments, including the learning of the periodic solutions for differential equations, and time series imputation (interpolation) and forecasting (extrapolation) on real-world datasets.

LGMar 27, 2025
Unveiling the Potential of Superexpressive Networks in Implicit Neural Representations

Uvini Balasuriya Mudiyanselage, Woojin Cho, Minju Jo et al.

In this study, we examine the potential of one of the ``superexpressive'' networks in the context of learning neural functions for representing complex signals and performing machine learning downstream tasks. Our focus is on evaluating their performance on computer vision and scientific machine learning tasks including signal representation/inverse problems and solutions of partial differential equations. Through an empirical investigation in various benchmark tasks, we demonstrate that superexpressive networks, as proposed by [Zhang et al. NeurIPS, 2022], which employ a specialized network structure characterized by having an additional dimension, namely width, depth, and ``height'', can surpass recent implicit neural representations that use highly-specialized nonlinear activation functions.

NADec 6, 2024
Physics-informed reduced order model with conditional neural fields

Minji Kim, Tianshu Wen, Kookjin Lee et al.

This study presents the conditional neural fields for reduced-order modeling (CNF-ROM) framework to approximate solutions of parametrized partial differential equations (PDEs). The approach combines a parametric neural ODE (PNODE) for modeling latent dynamics over time with a decoder that reconstructs PDE solutions from the corresponding latent states. We introduce a physics-informed learning objective for CNF-ROM, which includes two key components. First, the framework uses coordinate-based neural networks to calculate and minimize PDE residuals by computing spatial derivatives via automatic differentiation and applying the chain rule for time derivatives. Second, exact initial and boundary conditions (IC/BC) are imposed using approximate distance functions (ADFs) [Sukumar and Srivastava, CMAME, 2022]. However, ADFs introduce a trade-off as their second- or higher-order derivatives become unstable at the joining points of boundaries. To address this, we introduce an auxiliary network inspired by [Gladstone et al., NeurIPS ML4PS workshop, 2022]. Our method is validated through parameter extrapolation and interpolation, temporal extrapolation, and comparisons with analytical solutions.

LGOct 29, 2025
Learning Low Rank Neural Representations of Hyperbolic Wave Dynamics from Data

Woojin Cho, Kookjin Lee, Noseong Park et al.

We present a data-driven dimensionality reduction method that is well-suited for physics-based data representing hyperbolic wave propagation. The method utilizes a specialized neural network architecture called low rank neural representation (LRNR) inside a hypernetwork framework. The architecture is motivated by theoretical results that rigorously prove the existence of efficient representations for this wave class. We illustrate through archetypal examples that such an efficient low-dimensional representation of propagating waves can be learned directly from data through a combination of deep learning techniques. We observe that a low rank tensor representation arises naturally in the trained LRNRs, and that this reveals a new decomposition of wave propagation where each decomposed mode corresponds to interpretable physical features. Furthermore, we demonstrate that the LRNR architecture enables efficient inference via a compression scheme, which is a potentially important feature when deploying LRNRs in demanding performance regimes.

LGAug 15, 2025
Meta-learning Structure-Preserving Dynamics

Cheng Jing, Uvini Balasuriya Mudiyanselage, Woojin Cho et al.

Structure-preserving approaches to dynamics modeling have demonstrated great potential for modeling physical systems due to their strong inductive biases that enforce conservation laws and dissipative behavior. However, the resulting models are typically trained for fixed system configurations, requiring explicit knowledge of system parameters as well as costly retraining for each new set of parameters -- a major limitation in many-query or parameter-varying scenarios. Meta-learning offers a potential solution, but existing approaches like optimization-based meta-learning often suffer from training instability or limited generalization capability. Inspired by ideas from computer vision, we introduce a modulation-based meta-learning framework that directly conditions structure-preserving models on compact latent representations of potentially unknown system parameters, avoiding the need for gray-box system knowledge and explicit optimization during adaptation. Through the application of novel modulation strategies to parametric energy-conserving and dissipative systems, we enable scalable and generalizable learning across parametric families of dynamical systems. Experiments on standard benchmark problems demonstrate that our approach achieves accurate predictions in few-shot learning settings, without compromising on the essential physical constraints necessary for dynamical stability and effective generalization performance across parameter space.

CRJan 12, 2025
Modeling Neural Networks with Privacy Using Neural Stochastic Differential Equations

Sanghyun Hong, Fan Wu, Anthony Gruber et al.

In this work, we study the feasibility of using neural ordinary differential equations (NODEs) to model systems with intrinsic privacy properties. Unlike conventional feedforward neural networks, which have unlimited expressivity and can represent arbitrary mappings between inputs and outputs, NODEs constrain their learning to the solution of a system of differential equations. We first examine whether this constraint reduces memorization and, consequently, the membership inference risks associated with NODEs. We conduct a comprehensive evaluation of NODEs under membership inference attacks and show that they exhibit twice the resistance compared to conventional models such as ResNets. By analyzing the variance in membership risks across different NODE models, we find that their limited expressivity leads to reduced overfitting to the training data. We then demonstrate, both theoretically and empirically, that membership inference risks can be further mitigated by utilizing a stochastic variant of NODEs: neural stochastic differential equations (NSDEs). We show that NSDEs are differentially-private (DP) learners that provide the same provable privacy guarantees as DPSGD, the de-facto mechanism for training private models. NSDEs are also effective in mitigating membership inference attacks, achieving risk levels comparable to private models trained with DP-SGD while offering an improved privacyutility trade-off. Moreover, we propose a drop-in-replacement strategy that efficiently integrates NSDEs into conventional feedforward architectures to enhance their privacy.

LGMay 24, 2023
Reversible and irreversible bracket-based dynamics for deep graph neural networks

Anthony Gruber, Kookjin Lee, Nathaniel Trask

Recent works have shown that physics-inspired architectures allow the training of deep graph neural networks (GNNs) without oversmoothing. The role of these physics is unclear, however, with successful examples of both reversible (e.g., Hamiltonian) and irreversible (e.g., diffusion) phenomena producing comparable results despite diametrically opposed mechanisms, and further complications arising due to empirical departures from mathematical theory. This work presents a series of novel GNN architectures based upon structure-preserving bracket-based dynamical systems, which are provably guaranteed to either conserve energy or generate positive dissipation with increasing depth. It is shown that the theoretically principled framework employed here allows for inherently explainable constructions, which contextualize departures from theory in current architectures and better elucidate the roles of reversibility and irreversibility in network performance.

LGFeb 7, 2022
Unsupervised physics-informed disentanglement of multimodal data for high-throughput scientific discovery

Nathaniel Trask, Carianne Martinez, Kookjin Lee et al.

We introduce physics-informed multimodal autoencoders (PIMA) - a variational inference framework for discovering shared information in multimodal scientific datasets representative of high-throughput testing. Individual modalities are embedded into a shared latent space and fused through a product of experts formulation, enabling a Gaussian mixture prior to identify shared features. Sampling from clusters allows cross-modal generative modeling, with a mixture of expert decoder imposing inductive biases encoding prior scientific knowledge and imparting structured disentanglement of the latent space. This approach enables discovery of fingerprints which may be detected in high-dimensional heterogeneous datasets, avoiding traditional bottlenecks related to high-fidelity measurement and characterization. Motivated by accelerated co-design and optimization of materials manufacturing processes, a dataset of lattice metamaterials from metal additive manufacturing demonstrates accurate cross modal inference between images of mesoscale topology and mechanical stress-strain response.

LGNov 11, 2021
Climate Modeling with Neural Diffusion Equations

Jeehyun Hwang, Jeongwhan Choi, Hwangyong Choi et al.

Owing to the remarkable development of deep learning technology, there have been a series of efforts to build deep learning-based climate models. Whereas most of them utilize recurrent neural networks and/or graph neural networks, we design a novel climate model based on the two concepts, the neural ordinary differential equation (NODE) and the diffusion equation. Many physical processes involving a Brownian motion of particles can be described by the diffusion equation and as a result, it is widely used for modeling climate. On the other hand, neural ordinary differential equations (NODEs) are to learn a latent governing equation of ODE from data. In our presented method, we combine them into a single framework and propose a concept, called neural diffusion equation (NDE). Our NDE, equipped with the diffusion equation and one more additional neural network to model inherent uncertainty, can learn an appropriate latent governing equation that best describes a given climate dataset. In our experiments with two real-world and one synthetic datasets and eleven baselines, our method consistently outperforms existing baselines by non-trivial margins.

LGSep 11, 2021
Structure-preserving Sparse Identification of Nonlinear Dynamics for Data-driven Modeling

Kookjin Lee, Nathaniel Trask, Panos Stinis

Discovery of dynamical systems from data forms the foundation for data-driven modeling and recently, structure-preserving geometric perspectives have been shown to provide improved forecasting, stability, and physical realizability guarantees. We present here a unification of the Sparse Identification of Nonlinear Dynamics (SINDy) formalism with neural ordinary differential equations. The resulting framework allows learning of both "black-box" dynamics and learning of structure preserving bracket formalisms for both reversible and irreversible dynamics. We present a suite of benchmarks demonstrating effectiveness and structure preservation, including for chaotic systems.

COMP-PHJun 23, 2021
Machine learning structure preserving brackets for forecasting irreversible processes

Kookjin Lee, Nathaniel A. Trask, Panos Stinis

Forecasting of time-series data requires imposition of inductive biases to obtain predictive extrapolation, and recent works have imposed Hamiltonian/Lagrangian form to preserve structure for systems with reversible dynamics. In this work we present a novel parameterization of dissipative brackets from metriplectic dynamical systems appropriate for learning irreversible dynamics with unknown a priori model form. The process learns generalized Casimirs for energy and entropy guaranteed to be conserved and nondecreasing, respectively. Furthermore, for the case of added thermal noise, we guarantee exact preservation of a fluctuation-dissipation theorem, ensuring thermodynamic consistency. We provide benchmarks for dissipative systems demonstrating learned dynamics are more robust and generalize better than either "black-box" or penalty-based approaches.

LGJan 27, 2021
Partition of unity networks: deep hp-approximation

Kookjin Lee, Nathaniel A. Trask, Ravi G. Patel et al.

Approximation theorists have established best-in-class optimal approximation rates of deep neural networks by utilizing their ability to simultaneously emulate partitions of unity and monomials. Motivated by this, we propose partition of unity networks (POUnets) which incorporate these elements directly into the architecture. Classification architectures of the type used to learn probability measures are used to build a meshfree partition of space, while polynomial spaces with learnable coefficients are associated to each partition. The resulting hp-element-like approximation allows use of a fast least-squares optimizer, and the resulting architecture size need not scale exponentially with spatial dimension, breaking the curse of dimensionality. An abstract approximation result establishes desirable properties to guide network design. Numerical results for two choices of architecture demonstrate that POUnets yield hp-convergence for smooth functions and consistently outperform MLPs for piecewise polynomial functions with large numbers of discontinuities.

LGDec 4, 2020
DPM: A Novel Training Method for Physics-Informed Neural Networks in Extrapolation

Jungeun Kim, Kookjin Lee, Dongeun Lee et al.

We present a method for learning dynamics of complex physical processes described by time-dependent nonlinear partial differential equations (PDEs). Our particular interest lies in extrapolating solutions in time beyond the range of temporal domain used in training. Our choice for a baseline method is physics-informed neural network (PINN) [Raissi et al., J. Comput. Phys., 378:686--707, 2019] because the method parameterizes not only the solutions but also the equations that describe the dynamics of physical processes. We demonstrate that PINN performs poorly on extrapolation tasks in many benchmark problems. To address this, we propose a novel method for better training PINN and demonstrate that our newly enhanced PINNs can accurately extrapolate solutions in time. Our method shows up to 72% smaller errors than existing methods in terms of the standard L2-norm metric.

COMP-PHOct 28, 2020
Parameterized Neural Ordinary Differential Equations: Applications to Computational Physics Problems

Kookjin Lee, Eric J. Parish

This work proposes an extension of neural ordinary differential equations (NODEs) by introducing an additional set of ODE input parameters to NODEs. This extension allows NODEs to learn multiple dynamics specified by the input parameter instances. Our extension is inspired by the concept of parameterized ordinary differential equations, which are widely investigated in computational science and engineering contexts, where characteristics of the governing equations vary over the input parameters. We apply the proposed parameterized NODEs (PNODEs) for learning latent dynamics of complex dynamical processes that arise in computational physics, which is an essential component for enabling rapid numerical simulations for time-critical physics applications. For this, we propose an encoder-decoder-type framework, which models latent dynamics as PNODEs. We demonstrate the effectiveness of PNODEs with important benchmark problems from computational physics.

LGJun 11, 2019
Solving Large-Scale 0-1 Knapsack Problems and its Application to Point Cloud Resampling

Duanshun Li, Jing Liu, Noseong Park et al.

0-1 knapsack is of fundamental importance in computer science, business, operations research, etc. In this paper, we present a deep learning technique-based method to solve large-scale 0-1 knapsack problems where the number of products (items) is large and/or the values of products are not necessarily predetermined but decided by an external value assignment function during the optimization process. Our solution is greatly inspired by the method of Lagrange multiplier and some recent adoptions of game theory to deep learning. After formally defining our proposed method based on them, we develop an adaptive gradient ascent method to stabilize its optimization process. In our experiments, the presented method solves all the large-scale benchmark KP instances in a minute whereas existing methods show fluctuating runtime. We also show that our method can be used for other applications, including but not limited to the point cloud resampling.

LGJul 26, 2017
MMGAN: Manifold Matching Generative Adversarial Network

Noseong Park, Ankesh Anand, Joel Ruben Antony Moniz et al.

It is well-known that GANs are difficult to train, and several different techniques have been proposed in order to stabilize their training. In this paper, we propose a novel training method called manifold-matching, and a new GAN model called manifold-matching GAN (MMGAN). MMGAN finds two manifolds representing the vector representations of real and fake images. If these two manifolds match, it means that real and fake images are statistically identical. To assist the manifold-matching task, we also use i) kernel tricks to find better manifold structures, ii) moving-averaged manifolds across mini-batches, and iii) a regularizer based on correlation matrix to suppress mode collapse. We conduct in-depth experiments with three image datasets and compare with several state-of-the-art GAN models. 32.4% of images generated by the proposed MMGAN are recognized as fake images during our user study (16% enhancement compared to other state-of-the-art model). MMGAN achieved an unsupervised inception score of 7.8 for CIFAR-10.