Abhishek Kumar Srivastava

Abhishek Srivastava, Nikhil Kumar Tomar, Ulas Bagci et al.

Video capsule endoscopy is a hot topic in computer vision and medicine. Deep learning can have a positive impact on the future of video capsule endoscopy technology. It can improve the anomaly detection rate, reduce physicians' time for screening, and aid in real-world clinical analysis. CADx classification system for video capsule endoscopy has shown a great promise for further improvement. For example, detection of cancerous polyp and bleeding can lead to swift medical response and improve the survival rate of the patients. To this end, an automated CADx system must have high throughput and decent accuracy. In this paper, we propose FocalConvNet, a focal modulation network integrated with lightweight convolutional layers for the classification of small bowel anatomical landmarks and luminal findings. FocalConvNet leverages focal modulation to attain global context and allows global-local spatial interactions throughout the forward pass. Moreover, the convolutional block with its intrinsic inductive/learning bias and capacity to extract hierarchical features allows our FocalConvNet to achieve favourable results with high throughput. We compare our FocalConvNet with other SOTA on Kvasir-Capsule, a large-scale VCE dataset with 44,228 frames with 13 classes of different anomalies. Our proposed method achieves the weighted F1-score, recall and MCC} of 0.6734, 0.6373 and 0.2974, respectively outperforming other SOTA methodologies. Furthermore, we report the highest throughput of 148.02 images/second rate to establish the potential of FocalConvNet in a real-time clinical environment. The code of the proposed FocalConvNet is available at https://github.com/NoviceMAn-prog/FocalConvNet.

Nikhil Kumar Tomar, Abhishek Srivastava, Ulas Bagci et al.

The detection and removal of precancerous polyps through colonoscopy is the primary technique for the prevention of colorectal cancer worldwide. However, the miss rate of colorectal polyp varies significantly among the endoscopists. It is well known that a computer-aided diagnosis (CAD) system can assist endoscopists in detecting colon polyps and minimize the variation among endoscopists. In this study, we introduce a novel deep learning architecture, named MKDCNet, for automatic polyp segmentation robust to significant changes in polyp data distribution. MKDCNet is simply an encoder-decoder neural network that uses the pre-trained ResNet50 as the encoder and novel multiple kernel dilated convolution (MKDC) block that expands the field of view to learn more robust and heterogeneous representation. Extensive experiments on four publicly available polyp datasets and cell nuclei dataset show that the proposed MKDCNet outperforms the state-of-the-art methods when trained and tested on the same dataset as well when tested on unseen polyp datasets from different distributions. With rich results, we demonstrated the robustness of the proposed architecture. From an efficiency perspective, our algorithm can process at (approx 45) frames per second on RTX 3090 GPU. MKDCNet can be a strong benchmark for building real-time systems for clinical colonoscopies. The code of the proposed MKDCNet is available at https://github.com/nikhilroxtomar/MKDCNet.

Abhishek Srivastava, Debesh Jha, Elif Keles et al.

Accurate segmentation of organs-at-risks (OARs) is a precursor for optimizing radiation therapy planning. Existing deep learning-based multi-scale fusion architectures have demonstrated a tremendous capacity for 2D medical image segmentation. The key to their success is aggregating global context and maintaining high resolution representations. However, when translated into 3D segmentation problems, existing multi-scale fusion architectures might underperform due to their heavy computation overhead and substantial data diet. To address this issue, we propose a new OAR segmentation framework, called OARFocalFuseNet, which fuses multi-scale features and employs focal modulation for capturing global-local context across multiple scales. Each resolution stream is enriched with features from different resolution scales, and multi-scale information is aggregated to model diverse contextual ranges. As a result, feature representations are further boosted. The comprehensive comparisons in our experimental setup with OAR segmentation as well as multi-organ segmentation show that our proposed OARFocalFuseNet outperforms the recent state-of-the-art methods on publicly available OpenKBP datasets and Synapse multi-organ segmentation. Both of the proposed methods (3D-MSF and OARFocalFuseNet) showed promising performance in terms of standard evaluation metrics. Our best performing method (OARFocalFuseNet) obtained a dice coefficient of 0.7995 and hausdorff distance of 5.1435 on OpenKBP datasets and dice coefficient of 0.8137 on Synapse multi-organ segmentation dataset.

Abhishek Srivastava, Debesh Jha, Bulent Aydogan et al.

Head and Neck (H\&N) organ-at-risk (OAR) and tumor segmentations are essential components of radiation therapy planning. The varying anatomic locations and dimensions of H\&N nodal Gross Tumor Volumes (GTVn) and H\&N primary gross tumor volume (GTVp) are difficult to obtain due to lack of accurate and reliable delineation methods. The downstream effect of incorrect segmentation can result in unnecessary irradiation of normal organs. Towards a fully automated radiation therapy planning algorithm, we explore the efficacy of multi-scale fusion based deep learning architectures for accurately segmenting H\&N tumors from medical scans.

Nandan Thakur, Nils Reimers, Andreas Rücklé et al.

Existing neural information retrieval (IR) models have often been studied in homogeneous and narrow settings, which has considerably limited insights into their out-of-distribution (OOD) generalization capabilities. To address this, and to facilitate researchers to broadly evaluate the effectiveness of their models, we introduce Benchmarking-IR (BEIR), a robust and heterogeneous evaluation benchmark for information retrieval. We leverage a careful selection of 18 publicly available datasets from diverse text retrieval tasks and domains and evaluate 10 state-of-the-art retrieval systems including lexical, sparse, dense, late-interaction and re-ranking architectures on the BEIR benchmark. Our results show BM25 is a robust baseline and re-ranking and late-interaction-based models on average achieve the best zero-shot performances, however, at high computational costs. In contrast, dense and sparse-retrieval models are computationally more efficient but often underperform other approaches, highlighting the considerable room for improvement in their generalization capabilities. We hope this framework allows us to better evaluate and understand existing retrieval systems, and contributes to accelerating progress towards better robust and generalizable systems in the future. BEIR is publicly available at https://github.com/UKPLab/beir.

Abhishek Srivastava, Koushik Biswas, Gorkem Durak et al.

Segmentation of colorectal cancer (CRC) tumors in 3D medical imaging is both complex and clinically critical, providing vital support for effective radiation therapy planning and survival outcome assessment. Recently, 3D volumetric segmentation architectures incorporating long-range sequence modeling mechanisms, such as Transformers and Mamba, have gained attention for their capacity to achieve high accuracy in 3D medical image segmentation. In this work, we evaluate the effectiveness of these global token modeling techniques by pitting them against our proposed MambaOutUNet within the context of our newly introduced colorectal tumor segmentation dataset (CTS-204). Our findings suggest that robust local token interactions can outperform long-range modeling techniques in cases where the region of interest is small and anatomically complex, proposing a potential shift in 3D tumor segmentation research.

Xiaobo Huang, Amitabha Banerjee, Chien-Chia Chen et al.

We discuss how VMware is solving the following challenges to harness data to operate our ML-based anomaly detection system to detect performance issues in our Software Defined Data Center (SDDC) enterprise deployments: (i) label scarcity and label bias due to heavy dependency on unscalable human annotators, and (ii) data drifts due to ever-changing workload patterns, software stack and underlying hardware. Our anomaly detection system has been deployed in production for many years and has successfully detected numerous major performance issues. We demonstrate that by addressing these data challenges, we not only improve the accuracy of our performance anomaly detection model by 30%, but also ensure that the model performance to never degrade over time.

Abhishek Srivastava, Sukalpa Chanda, Debesh Jha et al.

Medical image segmentation can provide detailed information for clinical analysis which can be useful for scenarios where the detailed location of a finding is important. Knowing the location of disease can play a vital role in treatment and decision-making. Convolutional neural network (CNN) based encoder-decoder techniques have advanced the performance of automated medical image segmentation systems. Several such CNN-based methodologies utilize techniques such as spatial- and channel-wise attention to enhance performance. Another technique that has drawn attention in recent years is residual dense blocks (RDBs). The successive convolutional layers in densely connected blocks are capable of extracting diverse features with varied receptive fields and thus, enhancing performance. However, consecutive stacked convolutional operators may not necessarily generate features that facilitate the identification of the target structures. In this paper, we propose a progressive alternating attention network (PAANet). We develop progressive alternating attention dense (PAAD) blocks, which construct a guiding attention map (GAM) after every convolutional layer in the dense blocks using features from all scales. The GAM allows the following layers in the dense blocks to focus on the spatial locations relevant to the target region. Every alternate PAAD block inverts the GAM to generate a reverse attention map which guides ensuing layers to extract boundary and edge-related information, refining the segmentation process. Our experiments on three different biomedical image segmentation datasets exhibit that our PAANet achieves favourable performance when compared to other state-of-the-art methods.

Abhishek Srivastava, Sukalpa Chanda, Debesh Jha et al.

Colonoscopy is a gold standard procedure but is highly operator-dependent. Efforts have been made to automate the detection and segmentation of polyps, a precancerous precursor, to effectively minimize missed rate. Widely used computer-aided polyp segmentation systems actuated by encoder-decoder have achieved high performance in terms of accuracy. However, polyp segmentation datasets collected from varied centers can follow different imaging protocols leading to difference in data distribution. As a result, most methods suffer from performance drop and require re-training for each specific dataset. We address this generalizability issue by proposing a global multi-scale residual fusion network (GMSRF-Net). Our proposed network maintains high-resolution representations while performing multi-scale fusion operations for all resolution scales. To further leverage scale information, we design cross multi-scale attention (CMSA) and multi-scale feature selection (MSFS) modules within the GMSRF-Net. The repeated fusion operations gated by CMSA and MSFS demonstrate improved generalizability of the network. Experiments conducted on two different polyp segmentation datasets show that our proposed GMSRF-Net outperforms the previous top-performing state-of-the-art method by 8.34% and 10.31% on unseen CVC-ClinicDB and unseen Kvasir-SEG, in terms of dice coefficient.

Abhishek Srivastava, Sukalpa Chanda, Umapada Pal

Text independent writer identification is a challenging problem that differentiates between different handwriting styles to decide the author of the handwritten text. Earlier writer identification relied on handcrafted features to reveal pieces of differences between writers. Recent work with the advent of convolutional neural network, deep learning-based methods have evolved. In this paper, three different deep learning techniques - spatial attention mechanism, multi-scale feature fusion and patch-based CNN were proposed to effectively capture the difference between each writer's handwriting. Our methods are based on the hypothesis that handwritten text images have specific spatial regions which are more unique to a writer's style, multi-scale features propagate characteristic features with respect to individual writers and patch-based features give more general and robust representations that helps to discriminate handwriting from different writers. The proposed methods outperforms various state-of-the-art methodologies on word-level and page-level writer identification methods on three publicly available datasets - CVL, Firemaker, CERUG-EN datasets and give comparable performance on the IAM dataset.

Abhishek Srivastava, Sukalpa Chanda, Umapada Pal

The performance of facial super-resolution methods relies on their ability to recover facial structures and salient features effectively. Even though the convolutional neural network and generative adversarial network-based methods deliver impressive performances on face hallucination tasks, the ability to use attributes associated with the low-resolution images to improve performance is unsatisfactory. In this paper, we propose an Attribute Guided Attention Generative Adversarial Network which employs novel attribute guided attention (AGA) modules to identify and focus the generation process on various facial features in the image. Stacking multiple AGA modules enables the recovery of both high and low-level facial structures. We design the discriminator to learn discriminative features exploiting the relationship between the high-resolution image and their corresponding facial attribute annotations. We then explore the use of U-Net based architecture to refine existing predictions and synthesize further facial details. Extensive experiments across several metrics show that our AGA-GAN and AGA-GAN+U-Net framework outperforms several other cutting-edge face hallucination state-of-the-art methods. We also demonstrate the viability of our method when every attribute descriptor is not known and thus, establishing its application in real-world scenarios.

Seemandhar Jain, Prarthi Jain, Prabhat K. Upadhyay et al.

Wireless Body Area Networks (WBANs) comprise a network of sensors subcutaneously implanted or placed near the body surface and facilitate continuous monitoring of health parameters of a patient. Research endeavours involving WBAN are directed towards effective transmission of detected parameters to a Local Processing Unit (LPU, usually a mobile device) and analysis of the parameters at the LPU or a back-end cloud. An important concern in WBAN is the lightweight nature of WBAN nodes and the need to conserve their energy. This is especially true for subcutaneously implanted nodes that cannot be recharged or regularly replaced. Work in energy conservation is mostly aimed at optimising the routing of signals to minimise energy expended. In this paper, a simple yet innovative approach to energy conservation and detection of alarming health status is proposed. Energy conservation is ensured through a two-tier approach wherein the first tier eliminates `uninteresting' health parameter readings at the site of a sensing node and prevents these from being transmitted across the WBAN to the LPU. A reading is categorised as uninteresting if it deviates very slightly from its immediately preceding reading and does not provide new insight on the patient's well being. In addition to this, readings that are faulty and emanate from possible sensor malfunctions are also eliminated. These eliminations are done at the site of the sensor using algorithms that are light enough to effectively function in the extremely resource-constrained environments of the sensor nodes. We notice, through experiments, that this eliminates and thus reduces around 90% of the readings that need to be transmitted to the LPU leading to significant energy savings. Furthermore, the proper functioning of these algorithms in such constrained environments is confirmed and validated over a hardware simulation set up. The second tier of assessment includes a proposed anomaly detection model at the LPU that is capable of identifying anomalies from streaming health parameter readings and indicates an adverse medical condition. In addition to being able to handle streaming data, the model works within the resource-constrained environments of an LPU and eliminates the need of transmitting the data to a back-end cloud, ensuring further energy savings. The anomaly detection capability of the model is validated using data available from the critical care units of hospitals and is shown to be superior to other anomaly detection techniques.

Abhishek Srivastava, Debesh Jha, Sukalpa Chanda et al.

Methods based on convolutional neural networks have improved the performance of biomedical image segmentation. However, most of these methods cannot efficiently segment objects of variable sizes and train on small and biased datasets, which are common for biomedical use cases. While methods exist that incorporate multi-scale fusion approaches to address the challenges arising with variable sizes, they usually use complex models that are more suitable for general semantic segmentation problems. In this paper, we propose a novel architecture called Multi-Scale Residual Fusion Network (MSRF-Net), which is specially designed for medical image segmentation. The proposed MSRF-Net is able to exchange multi-scale features of varying receptive fields using a Dual-Scale Dense Fusion (DSDF) block. Our DSDF block can exchange information rigorously across two different resolution scales, and our MSRF sub-network uses multiple DSDF blocks in sequence to perform multi-scale fusion. This allows the preservation of resolution, improved information flow and propagation of both high- and low-level features to obtain accurate segmentation maps. The proposed MSRF-Net allows to capture object variabilities and provides improved results on different biomedical datasets. Extensive experiments on MSRF-Net demonstrate that the proposed method outperforms the cutting-edge medical image segmentation methods on four publicly available datasets. We achieve the dice coefficient of 0.9217, 0.9420, and 0.9224, 0.8824 on Kvasir-SEG, CVC-ClinicDB, 2018 Data Science Bowl dataset, and ISIC-2018 skin lesion segmentation challenge dataset respectively. We further conducted generalizability tests and achieved a dice coefficient of 0.7921 and 0.7575 on CVC-ClinicDB and Kvasir-SEG, respectively.