Juzheng Zhang

Juzheng Zhang, Jiacheng You, Ashwinee Panda et al.

Low-Rank Adaptation (LoRA) has emerged as a popular parameter-efficient fine-tuning (PEFT) method for Large Language Models (LLMs), yet it still incurs notable overhead and suffers from parameter interference in multi-task scenarios. We propose LoRA with Reduced Interference (LoRI), a simple yet effective approach that freezes the projection matrices $A$ as random projections and sparsifies the matrices $B$ using task-specific masks. This design substantially reduces the number of trainable parameters while maintaining strong task performance. Moreover, LoRI minimizes cross-task interference in adapter merging by leveraging the orthogonality between adapter subspaces, and supports continual learning by using sparsity to mitigate catastrophic forgetting. Extensive experiments across natural language understanding, mathematical reasoning, code generation, and safety alignment tasks demonstrate that LoRI outperforms full fine-tuning and existing PEFT methods, while using up to 95% fewer trainable parameters than LoRA. In multi-task experiments, LoRI enables effective adapter merging and continual learning with reduced cross-task interference. Code is available at: https://github.com/juzhengz/LoRI

Haotong Du, Quanming Yao, Juzheng Zhang et al.

Subgraph-based methods have proven to be effective and interpretable in predicting drug-drug interactions (DDIs), which are essential for medical practice and drug development. Subgraph selection and encoding are critical stages in these methods, yet customizing these components remains underexplored due to the high cost of manual adjustments. In this study, inspired by the success of neural architecture search (NAS), we propose a method to search for data-specific components within subgraph-based frameworks. Specifically, we introduce extensive subgraph selection and encoding spaces that account for the diverse contexts of drug interactions in DDI prediction. To address the challenge of large search spaces and high sampling costs, we design a relaxation mechanism that uses an approximation strategy to efficiently explore optimal subgraph configurations. This approach allows for robust exploration of the search space. Extensive experiments demonstrate the effectiveness and superiority of the proposed method, with the discovered subgraphs and encoding functions highlighting the model's adaptability.

Yongqiang Chen, Quanming Yao, Juzheng Zhang et al.

Recently, there has been a surge of interest in extending the success of large language models (LLMs) from texts to molecules. Most existing approaches adopt a graph neural network to represent a molecule as a series of node tokens for molecule-language alignment, which, however, have overlooked the inherent hierarchical structures in molecules. Notably, higher-order molecular structures contain rich semantics of functional groups, which encode crucial biochemical functionalities of the molecules. We show that neglecting the hierarchical information in tokenization will lead to subpar molecule-language alignment and severe hallucination. To address this limitation, we propose HIerarchical GrapH Tokenization (HIGHT). HIGHT employs a hierarchical graph tokenizer that encodes the hierarchy of atom, motif, and molecular levels of informative tokens to improve the molecular perception of LLMs. HIGHT also adopts an augmented instruction tuning dataset, enriched with the hierarchical graph information, to further enhance the molecule-language alignment. Extensive experiments on 14 real-world benchmarks verify the effectiveness of HIGHT in reducing hallucination by 40%, and significant improvements in various molecule-language downstream tasks. The project is available at https: //higraphllm.github.io/.

Juzheng Zhang, Lanning Wei, Zhen Xu et al.

Link prediction is a fundamental task in graph learning, inherently shaped by the topology of the graph. While traditional heuristics are grounded in graph topology, they encounter challenges in generalizing across diverse graphs. Recent research efforts have aimed to leverage the potential of heuristics, yet a unified formulation accommodating both local and global heuristics remains undiscovered. Drawing insights from the fact that both local and global heuristics can be represented by adjacency matrix multiplications, we propose a unified matrix formulation to accommodate and generalize various heuristics. We further propose the Heuristic Learning Graph Neural Network (HL-GNN) to efficiently implement the formulation. HL-GNN adopts intra-layer propagation and inter-layer connections, allowing it to reach a depth of around 20 layers with lower time complexity than GCN. Extensive experiments on the Planetoid, Amazon, and OGB datasets underscore the effectiveness and efficiency of HL-GNN. It outperforms existing methods by a large margin in prediction performance. Additionally, HL-GNN is several orders of magnitude faster than heuristic-inspired methods while requiring only a few trainable parameters. The case study further demonstrates that the generalized heuristics and learned weights are highly interpretable.