FLU-DYNDec 22, 2025
A Critical Assessment of Pattern Comparisons Between POD and Autoencoders in Intraventricular FlowsEneko Lazpita, Andrés Bell-Navas, Jesús Garicano-Mena et al.
Understanding intraventricular hemodynamics requires compact and physically interpretable representations of the underlying flow structures, as characteristic flow patterns are closely associated with cardiovascular conditions and can support early detection of cardiac deterioration. Conventional visualization of velocity or pressure fields, however, provides limited insight into the coherent mechanisms driving these dynamics. Reduced-order modeling techniques, like Proper Orthogonal Decomposition (POD) and Autoencoder (AE) architectures, offer powerful alternatives to extract dominant flow features from complex datasets. This study systematically compares POD with several AE variants (Linear, Nonlinear, Convolutional, and Variational) using left ventricular flow fields obtained from computational fluid dynamics simulations. We show that, for a suitably chosen latent dimension, AEs produce modes that become nearly orthogonal and qualitatively resemble POD modes that capture a given percentage of kinetic energy. As the number of latent modes increases, AE modes progressively lose orthogonality, leading to linear dependence, spatial redundancy, and the appearance of repeated modes with substantial high-frequency content. This degradation reduces interpretability and introduces noise-like components into AE-based reduced-order models, potentially complicating their integration with physics-based formulations or neural-network surrogates. The extent of interpretability loss varies across the AEs, with nonlinear, convolutional, and variational models exhibiting distinct behaviors in orthogonality preservation and feature localization. Overall, the results indicate that AEs can reproduce POD-like coherent structures under specific latent-space configurations, while highlighting the need for careful mode selection to ensure physically meaningful representations of cardiac flow dynamics.
IVApr 10, 2025Code
Heart Failure Prediction using Modal Decomposition and Masked Autoencoders for Scarce Echocardiography DatabasesAndrés Bell-Navas, María Villalba-Orero, Enrique Lara-Pezzi et al.
Heart diseases constitute the main cause of international human defunction. According to the World Health Organization (WHO), approximately 18 million deaths happen each year due to precisely heart diseases. In particular, heart failures (HF) press the healthcare industry to develop systems for their early, rapid, and effective prediction. This work presents an automatic system based on a novel deep learning framework which analyses in real-time echocardiography video sequences for the challenging and more specific task of heart failure time prediction. This system works in two stages. The first one transforms the data from a database of echocardiography video sequences into a machine learning-compatible collection of annotated images which can be used in the training phase of any machine learning-based framework, including a deep learning-based one. This stage includes the use of the Higher Order Dynamic Mode Decomposition (HODMD) algorithm for both data augmentation and feature extraction. The second stage builds and trains a Vision Transformer (ViT). Self-supervised learning (SSL) methods, so far barely explored in the literature about heart failure prediction, are adopted to effectively train the ViT from scratch, even with scarce databases. The designed neural network analyses images from echocardiography sequences to estimate the time in which a heart failure will happen. The results obtained show the efficacy of the HODMD algorithm and the superiority of the proposed system with respect to several established ViT and Convolutional Neural Network (CNN) architectures. The source code will be incorporated into the next version release of the ModelFLOWs-app software (https://github.com/modelflows/ModelFLOWs-app).
IVApr 30, 2024
Automatic Cardiac Pathology Recognition in Echocardiography Images Using Higher Order Dynamic Mode Decomposition and a Vision Transformer for Small DatasetsAndrés Bell-Navas, Nourelhouda Groun, María Villalba-Orero et al.
Heart diseases are the main international cause of human defunction. According to the WHO, nearly 18 million people decease each year because of heart diseases. Also considering the increase of medical data, much pressure is put on the health industry to develop systems for early and accurate heart disease recognition. In this work, an automatic cardiac pathology recognition system based on a novel deep learning framework is proposed, which analyses in real-time echocardiography video sequences. The system works in two stages. The first one transforms the data included in a database of echocardiography sequences into a machine-learning-compatible collection of annotated images which can be used in the training stage of any kind of machine learning-based framework, and more specifically with deep learning. This includes the use of the Higher Order Dynamic Mode Decomposition (HODMD) algorithm, for the first time to the authors' knowledge, for both data augmentation and feature extraction in the medical field. The second stage is focused on building and training a Vision Transformer (ViT), barely explored in the related literature. The ViT is adapted for an effective training from scratch, even with small datasets. The designed neural network analyses images from an echocardiography sequence to predict the heart state. The results obtained show the superiority of the proposed system and the efficacy of the HODMD algorithm, even outperforming pretrained Convolutional Neural Networks (CNNs), which are so far the method of choice in the literature.