Jie Peng

LG
h-index42
52papers
459citations
Novelty54%
AI Score61

52 Papers

LGJun 7, 2022Code
Enhancing Distributional Stability among Sub-populations

Jiashuo Liu, Jiayun Wu, Jie Peng et al.

Enhancing the stability of machine learning algorithms under distributional shifts is at the heart of the Out-of-Distribution (OOD) Generalization problem. Derived from causal learning, recent works of invariant learning pursue strict invariance with multiple training environments. Although intuitively reasonable, strong assumptions on the availability and quality of environments are made to learn the strict invariance property. In this work, we come up with the ``distributional stability" notion to mitigate such limitations. It quantifies the stability of prediction mechanisms among sub-populations down to a prescribed scale. Based on this, we propose the learnability assumption and derive the generalization error bound under distribution shifts. Inspired by theoretical analyses, we propose our novel stable risk minimization (SRM) algorithm to enhance the model's stability w.r.t. shifts in prediction mechanisms ($Y|X$-shifts). Experimental results are consistent with our intuition and validate the effectiveness of our algorithm. The code can be found at https://github.com/LJSthu/SRM.

94.3AIMay 28Code
Mind-Omni: A Unified Multi-Task Framework for Brain-Vision-Language Modeling via Discrete Diffusion

Yizhuo Lu, Changde Du, Qingyu Shi et al.

Modeling the interplay between external stimuli and internal neural representations is a pivotal research area for Brain-Computer Interfaces (BCIs). A major limitation of prior work is the prevailing paradigm of specialized, single-task models, which curtails versatility and neglects inter-task synergies. To address this, we propose Mind-Omni, the first versatile framework that unifies seven distinct encoding and decoding tasks through a discrete diffusion paradigm. At its core is a novel Brain Tokenizer that transforms heterogeneous, continuous brain signals into standardized, discrete tokens. This enables direct, token-level interactions for mutual understanding and generation between any two or more modalities within a shared semantic space. To unlock advanced reasoning capabilities, we further curate a specialized Brain Question Answering (BQA) instruction-tuning dataset. Our model not only establishes a new state-of-the-art among multi-task unified frameworks but also provides strong evidence for multi-task synergy. By demonstrating performance competitive with, and at times superior to, larger specialized models, our work offers a powerful new paradigm for neural modeling and paves the way for foundation models of neural activity. The code is publicly available at https://github.com/ReedOnePeck/Mind-Omni.

85.7AIApr 18Code
Graph-of-Agents: A Graph-based Framework for Multi-Agent LLM Collaboration

Sukwon Yun, Jie Peng, Pingzhi Li et al.

With an ever-growing zoo of LLMs and benchmarks, the need to orchestrate multiple models for improved task performance has never been more pressing. While frameworks like Mixture-of-Agents (MoA) attempt to coordinate LLMs, they often fall short in terms of (1) selecting relevant agents, (2) facilitating effective intra-agent communication, and (3) integrating responses efficiently. In this work, we propose Graph-of-Agents (GoA), a new graph-based framework for modeling multi-agent LLM communication. Our approach begins with node sampling, selecting only the most relevant agents by leveraging model cards that summarize each model's domain, task specialization, and other characteristics. Next, we construct edges between the selected agents by evaluating their responses against one another to determine relevance ordering. Directed message passing is then performed from highly relevant agents to less relevant ones to enhance their responses, followed by reverse message passing to refine the original responses of the more relevant agents. Finally, the updated responses are aggregated via graph-based pooling (e.g., max or mean pooling) to produce a single, unified answer. We evaluate GoA on diverse multi-domain benchmarks (MMLU, MMLU-Pro, GPQA) and domain-specific benchmarks (MATH, HumanEval, MedMCQA), with an agent pool of 6 LLMs spanning multiple domains. Surprisingly, GoA achieves superior performance using only 3 selected agents, outperforming recent multi-agent LLM baselines that utilize all 6 agents simultaneously. By adopting a graph structure, GoA offers both scalability and effectiveness through structured message passing-positioning it as a strong candidate for navigating the challenges of the ever-growing LLM zoo. Code is available at: https://github.com/UNITES-Lab/GoA.

CVJul 25, 2024Code
Mew: Multiplexed Immunofluorescence Image Analysis through an Efficient Multiplex Network

Sukwon Yun, Jie Peng, Alexandro E. Trevino et al.

Recent advancements in graph-based approaches for multiplexed immunofluorescence (mIF) images have significantly propelled the field forward, offering deeper insights into patient-level phenotyping. However, current graph-based methodologies encounter two primary challenges: (1) Cellular Heterogeneity, where existing approaches fail to adequately address the inductive biases inherent in graphs, particularly the homophily characteristic observed in cellular connectivity and; (2) Scalability, where handling cellular graphs from high-dimensional images faces difficulties in managing a high number of cells. To overcome these limitations, we introduce Mew, a novel framework designed to efficiently process mIF images through the lens of multiplex network. Mew innovatively constructs a multiplex network comprising two distinct layers: a Voronoi network for geometric information and a Cell-type network for capturing cell-wise homogeneity. This framework equips a scalable and efficient Graph Neural Network (GNN), capable of processing the entire graph during training. Furthermore, Mew integrates an interpretable attention module that autonomously identifies relevant layers for image classification. Extensive experiments on a real-world patient dataset from various institutions highlight Mew's remarkable efficacy and efficiency, marking a significant advancement in mIF image analysis. The source code of Mew can be found here: \url{https://github.com/UNITES-Lab/Mew}

AIJul 1, 2024
Human-like object concept representations emerge naturally in multimodal large language models

Changde Du, Kaicheng Fu, Bincheng Wen et al.

Understanding how humans conceptualize and categorize natural objects offers critical insights into perception and cognition. With the advent of Large Language Models (LLMs), a key question arises: can these models develop human-like object representations from linguistic and multimodal data? In this study, we combined behavioral and neuroimaging analyses to explore the relationship between object concept representations in LLMs and human cognition. We collected 4.7 million triplet judgments from LLMs and Multimodal LLMs (MLLMs) to derive low-dimensional embeddings that capture the similarity structure of 1,854 natural objects. The resulting 66-dimensional embeddings were stable, predictive, and exhibited semantic clustering similar to human mental representations. Remarkably, the dimensions underlying these embeddings were interpretable, suggesting that LLMs and MLLMs develop human-like conceptual representations of objects. Further analysis showed strong alignment between model embeddings and neural activity patterns in brain regions such as EBA, PPA, RSC, and FFA. This provides compelling evidence that the object representations in LLMs, while not identical to human ones, share fundamental similarities that reflect key aspects of human conceptual knowledge. Our findings advance the understanding of machine intelligence and inform the development of more human-like artificial cognitive systems.

LGFeb 4Code
NeuroCanvas: VLLM-Powered Robust Seizure Detection by Reformulating Multichannel EEG as Image

Yan Chen, Jie Peng, Moajjem Hossain Chowdhury et al.

Accurate and timely seizure detection from Electroencephalography (EEG) is critical for clinical intervention, yet manual review of long-term recordings is labor-intensive. Recent efforts to encode EEG signals into large language models (LLMs) show promise in handling neural signals across diverse patients, but two significant challenges remain: (1) multi-channel heterogeneity, as seizure-relevant information varies substantially across EEG channels, and (2) computing inefficiency, as the EEG signals need to be encoded into a massive number of tokens for the prediction. To address these issues, we draw the EEG signal and propose the novel NeuroCanvas framework. Specifically, NeuroCanvas consists of two modules: (i) The Entropy-guided Channel Selector (ECS) selects the seizure-relevant channels input to LLM and (ii) the following Canvas of Neuron Signal (CNS) converts selected multi-channel heterogeneous EEG signals into structured visual representations. The ECS module alleviates the multi-channel heterogeneity issue, and the CNS uses compact visual tokens to represent the EEG signals that improve the computing efficiency. We evaluate NeuroCanvas across multiple seizure detection datasets, demonstrating a significant improvement of $20\%$ in F1 score and reductions of $88\%$ in inference latency. These results highlight NeuroCanvas as a scalable and effective solution for real-time and resource-efficient seizure detection in clinical practice.The code will be released at https://github.com/Yanchen30247/seizure_detect.

LGNov 7, 2022
TLP: A Deep Learning-based Cost Model for Tensor Program Tuning

Yi Zhai, Yu Zhang, Shuo Liu et al.

Tensor program tuning is a non-convex objective optimization problem, to which search-based approaches have proven to be effective. At the core of the search-based approaches lies the design of the cost model. Though deep learning-based cost models perform significantly better than other methods, they still fall short and suffer from the following problems. First, their feature extraction heavily relies on expert-level domain knowledge in hardware architectures. Even so, the extracted features are often unsatisfactory and require separate considerations for CPUs and GPUs. Second, a cost model trained on one hardware platform usually performs poorly on another, a problem we call cross-hardware unavailability. In order to address these problems, we propose TLP and MTLTLP. TLP is a deep learning-based cost model that facilitates tensor program tuning. Instead of extracting features from the tensor program itself, TLP extracts features from the schedule primitives. We treat schedule primitives as tensor languages. TLP is thus a Tensor Language Processing task. In this way, the task of predicting the tensor program latency through the cost model is transformed into a natural language processing (NLP) regression task. MTL-TLP combines Multi-Task Learning and TLP to cope with the cross-hardware unavailability problem. We incorporate these techniques into the Ansor framework and conduct detailed experiments. Results show that TLP can speed up the average search time by 9.1X and 3.0X on CPU and GPU workloads, respectively, compared to the state-of-the-art implementation. MTL-TLP can achieve a speed-up of 4.7X and 2.9X on CPU and GPU workloads, respectively, using only 7% of the target hardware data.

LGAug 10, 2023
Byzantine-Robust Decentralized Stochastic Optimization with Stochastic Gradient Noise-Independent Learning Error

Jie Peng, Weiyu Li, Qing Ling

This paper studies Byzantine-robust stochastic optimization over a decentralized network, where every agent periodically communicates with its neighbors to exchange local models, and then updates its own local model by stochastic gradient descent (SGD). The performance of such a method is affected by an unknown number of Byzantine agents, which conduct adversarially during the optimization process. To the best of our knowledge, there is no existing work that simultaneously achieves a linear convergence speed and a small learning error. We observe that the learning error is largely dependent on the intrinsic stochastic gradient noise. Motivated by this observation, we introduce two variance reduction methods, stochastic average gradient algorithm (SAGA) and loopless stochastic variance-reduced gradient (LSVRG), to Byzantine-robust decentralized stochastic optimization for eliminating the negative effect of the stochastic gradient noise. The two resulting methods, BRAVO-SAGA and BRAVO-LSVRG, enjoy both linear convergence speeds and stochastic gradient noise-independent learning errors. Such learning errors are optimal for a class of methods based on total variation (TV)-norm regularization and stochastic subgradient update. We conduct extensive numerical experiments to demonstrate their effectiveness under various Byzantine attacks.

NAJun 12, 2018
Adaptive BDDC algorithms for the system arising from plane wave discretization of Helmholtz equations

Jie Peng, Junxian Wang, Shi Shu

Balancing domain decomposition by constraints (BDDC) algorithms with adaptive primal constraints are developed in a concise variational framework for the weighted plane wave least-squares (PWLS) discritization of Helmholtz equations with high and various wave numbers. The unknowns to be solved in this preconditioned system are defined on elements rather than vertices or edges, which are different from the well-known discritizations such as the classical finite element method. Through choosing suitable "interface" and appropriate primal constraints with complex coefficients and introducing some local techniques, we developed a two-level adaptive BDDC algorithm for the PWLS discretization, and the condition number of the preconditioned system is proved to be bounded above by a user-defined tolerance and a constant which is only dependent on the maximum number of interfaces per subdomain. A multilevel algorithm is also attempted to resolve the bottleneck in large scale coarse problem. Numerical results are carried out to confirm the theoretical results and illustrate the efficiency of the proposed algorithms.

79.5DCMay 6
GRACE-MoE: Grouping and Replication with Locality-Aware Routing for Efficient Distributed MoE Inference

Yu Han, Lehan Pan, Jie Peng et al.

Sparse Mixture of Experts (SMoE) enables scalable parameter growth in large language models (LLMs) by selectively activating a subset of experts, and its large parameter count necessitates distributed deployment for inference. However, distributed inference faces a critical dilemma: although communication overhead constitutes the primary bottleneck, reducing it often exacerbates computational load imbalance, leading to resource waste. In this paper, we present GRACE-MoE, which stands for Grouping and Replication with Locality-Aware Routing for SMoE inference. GRACE-MoE is a lossless co-optimization framework that integrates expert grouping to reduce communication and dynamic replication to correct load skew, together with locality-aware routing to resolve replica selection. To underpin this coordinated optimization in multi-node settings, GRACE-MoE adopts a hierarchical sparse communication design that reduces cross-node traffic while implicitly aligning execution across nodes, thereby mitigating synchronization overhead. Experiments on diverse models and multi-node, multi-GPU environments demonstrate that GRACE-MoE efficiently reduces end-to-end inference latency, achieving up to 4.66x speedup over existing systems, and the code will be released upon acceptance.

ROJul 2, 2024
LDP: A Local Diffusion Planner for Efficient Robot Navigation and Collision Avoidance

Wenhao Yu, Jie Peng, Huanyu Yang et al.

The conditional diffusion model has been demonstrated as an efficient tool for learning robot policies, owing to its advancement to accurately model the conditional distribution of policies. The intricate nature of real-world scenarios, characterized by dynamic obstacles and maze-like structures, underscores the complexity of robot local navigation decision-making as a conditional distribution problem. Nevertheless, leveraging the diffusion model for robot local navigation is not trivial and encounters several under-explored challenges: (1) Data Urgency. The complex conditional distribution in local navigation needs training data to include diverse policy in diverse real-world scenarios; (2) Myopic Observation. Due to the diversity of the perception scenarios, diffusion decisions based on the local perspective of robots may prove suboptimal for completing the entire task, as they often lack foresight. In certain scenarios requiring detours, the robot may become trapped. To address these issues, our approach begins with an exploration of a diverse data generation mechanism that encompasses multiple agents exhibiting distinct preferences through target selection informed by integrated global-local insights. Then, based on this diverse training data, a diffusion agent is obtained, capable of excellent collision avoidance in diverse scenarios. Subsequently, we augment our Local Diffusion Planner, also known as LDP by incorporating global observations in a lightweight manner. This enhancement broadens the observational scope of LDP, effectively mitigating the risk of becoming ensnared in local optima and promoting more robust navigational decisions.

ROOct 20, 2023
PathRL: An End-to-End Path Generation Method for Collision Avoidance via Deep Reinforcement Learning

Wenhao Yu, Jie Peng, Quecheng Qiu et al.

Robot navigation using deep reinforcement learning (DRL) has shown great potential in improving the performance of mobile robots. Nevertheless, most existing DRL-based navigation methods primarily focus on training a policy that directly commands the robot with low-level controls, like linear and angular velocities, which leads to unstable speeds and unsmooth trajectories of the robot during the long-term execution. An alternative method is to train a DRL policy that outputs the navigation path directly. However, two roadblocks arise for training a DRL policy that outputs paths: (1) The action space for potential paths often involves higher dimensions comparing to low-level commands, which increases the difficulties of training; (2) It takes multiple time steps to track a path instead of a single time step, which requires the path to predicate the interactions of the robot w.r.t. the dynamic environment in multiple time steps. This, in turn, amplifies the challenges associated with training. In response to these challenges, we propose PathRL, a novel DRL method that trains the policy to generate the navigation path for the robot. Specifically, we employ specific action space discretization techniques and tailored state space representation methods to address the associated challenges. In our experiments, PathRL achieves better success rates and reduces angular rotation variability compared to other DRL navigation methods, facilitating stable and smooth robot movement. We demonstrate the competitive edge of PathRL in both real-world scenarios and multiple challenging simulation environments.

NAApr 25, 2017
An adaptive BDDC algorithm in variational form for mortar discretizations

Jie Peng, Shi Shu, Junxian Wang

A balancing domain decomposition by constraints (BDDC) algorithm with adaptive primal constraints in variational form is introduced and analyzed for high-order mortar discretization of two-dimensional elliptic problems with high varying and random coefficients. Some vector-valued auxiliary spaces and operators with essential properties are defined to describe the variational algorithm, and the coarse space is formed by using a transformation operator on each interface. Compared with the adaptive BDDC algorithms for conforming Galerkin approximations, our algorithm is more simple, because there is not any continuity constraints at subdomain vertices in the mortar method involved in this paper. The condition number of the preconditioned system is proved to be bounded above by a user-defined tolerance and a constant which is dependent on the maximum number of interfaces per subdomain, and independent of the mesh size and the contrast of the given coefficients. Numerical results show the robustness and efficiency of the algorithm for various model problems.

LGJul 3, 2024
DLO: Dynamic Layer Operation for Efficient Vertical Scaling of LLMs

Zhen Tan, Daize Dong, Xinyu Zhao et al.

In this paper, we introduce Dynamic Layer Operations (DLO), a novel approach for vertically scaling transformer-based Large Language Models (LLMs) by dynamically expanding, activating, or skipping layers using a sophisticated routing policy based on layerwise feature similarity. Unlike traditional Mixture-of-Experts (MoE) methods that focus on extending the model width, our approach targets model depth, addressing the redundancy observed across layer representations for various input samples. Our framework is integrated with the Supervised Fine-Tuning (SFT) stage, eliminating the need for resource-intensive Continual Pre-Training (CPT). Experimental results demonstrate that DLO not only outperforms the original unscaled models but also achieves comparable results to densely expanded models with significantly improved efficiency. Our work offers a promising direction for building efficient yet powerful LLMs. We will release our implementation and model weights upon acceptance.

CVMar 22, 2023
$P^{3}O$: Transferring Visual Representations for Reinforcement Learning via Prompting

Guoliang You, Xiaomeng Chu, Yifan Duan et al.

It is important for deep reinforcement learning (DRL) algorithms to transfer their learned policies to new environments that have different visual inputs. In this paper, we introduce Prompt based Proximal Policy Optimization ($P^{3}O$), a three-stage DRL algorithm that transfers visual representations from a target to a source environment by applying prompting. The process of $P^{3}O$ consists of three stages: pre-training, prompting, and predicting. In particular, we specify a prompt-transformer for representation conversion and propose a two-step training process to train the prompt-transformer for the target environment, while the rest of the DRL pipeline remains unchanged. We implement $P^{3}O$ and evaluate it on the OpenAI CarRacing video game. The experimental results show that $P^{3}O$ outperforms the state-of-the-art visual transferring schemes. In particular, $P^{3}O$ allows the learned policies to perform well in environments with different visual inputs, which is much more effective than retraining the policies in these environments.

ROMar 22, 2023
Deep Reinforcement Learning for Localizability-Enhanced Navigation in Dynamic Human Environments

Yuan Chen, Quecheng Qiu, Xiangyu Liu et al.

Reliable localization is crucial for autonomous robots to navigate efficiently and safely. Some navigation methods can plan paths with high localizability (which describes the capability of acquiring reliable localization). By following these paths, the robot can access the sensor streams that facilitate more accurate location estimation results by the localization algorithms. However, most of these methods require prior knowledge and struggle to adapt to unseen scenarios or dynamic changes. To overcome these limitations, we propose a novel approach for localizability-enhanced navigation via deep reinforcement learning in dynamic human environments. Our proposed planner automatically extracts geometric features from 2D laser data that are helpful for localization. The planner learns to assign different importance to the geometric features and encourages the robot to navigate through areas that are helpful for laser localization. To facilitate the learning of the planner, we suggest two techniques: (1) an augmented state representation that considers the dynamic changes and the confidence of the localization results, which provides more information and allows the robot to make better decisions, (2) a reward metric that is capable to offer both sparse and dense feedback on behaviors that affect localization accuracy. Our method exhibits significant improvements in lost rate and arrival rate when tested in previously unseen environments.

LGAug 7, 2024
Beyond Over-smoothing: Uncovering the Trainability Challenges in Deep Graph Neural Networks

Jie Peng, Runlin Lei, Zhewei Wei

The drastic performance degradation of Graph Neural Networks (GNNs) as the depth of the graph propagation layers exceeds 8-10 is widely attributed to a phenomenon of Over-smoothing. Although recent research suggests that Over-smoothing may not be the dominant reason for such a performance degradation, they have not provided rigorous analysis from a theoretical view, which warrants further investigation. In this paper, we systematically analyze the real dominant problem in deep GNNs and identify the issues that these GNNs towards addressing Over-smoothing essentially work on via empirical experiments and theoretical gradient analysis. We theoretically prove that the difficult training problem of deep MLPs is actually the main challenge, and various existing methods that supposedly tackle Over-smoothing actually improve the trainability of MLPs, which is the main reason for their performance gains. Our further investigation into trainability issues reveals that properly constrained smaller upper bounds of gradient flow notably enhance the trainability of GNNs. Experimental results on diverse datasets demonstrate consistency between our theoretical findings and empirical evidence. Our analysis provides new insights in constructing deep graph models.

CRJan 5, 2025Code
Layer-Level Self-Exposure and Patch: Affirmative Token Mitigation for Jailbreak Attack Defense

Yang Ouyang, Hengrui Gu, Shuhang Lin et al.

As large language models (LLMs) are increasingly deployed in diverse applications, including chatbot assistants and code generation, aligning their behavior with safety and ethical standards has become paramount. However, jailbreak attacks, which exploit vulnerabilities to elicit unintended or harmful outputs, threaten LLMs' safety significantly. In this paper, we introduce Layer-AdvPatcher, a novel methodology designed to defend against jailbreak attacks by utilizing an unlearning strategy to patch specific layers within LLMs through self-augmented datasets. Our insight is that certain layer(s), tend to produce affirmative tokens when faced with harmful prompts. By identifying these layers and adversarially exposing them to generate more harmful data, one can understand their inherent and diverse vulnerabilities to attacks. With these exposures, we then "unlearn" these issues, reducing the impact of affirmative tokens and hence minimizing jailbreak risks while keeping the model's responses to safe queries intact. We conduct extensive experiments on two models, four benchmark datasets, and multiple state-of-the-art jailbreak attacks to demonstrate the efficacy of our approach. Results indicate that our framework reduces the harmfulness and attack success rate of jailbreak attacks without compromising utility for benign queries compared to recent defense methods. Our code is publicly available at: https://github.com/oyy2000/LayerAdvPatcher

CVAug 21, 2024
AnyDesign: Versatile Area Fashion Editing via Mask-Free Diffusion

Yunfang Niu, Lingxiang Wu, Dong Yi et al.

Fashion image editing aims to modify a person's appearance based on a given instruction. Existing methods require auxiliary tools like segmenters and keypoint extractors, lacking a flexible and unified framework. Moreover, these methods are limited in the variety of clothing types they can handle, as most datasets focus on people in clean backgrounds and only include generic garments such as tops, pants, and dresses. These limitations restrict their applicability in real-world scenarios. In this paper, we first extend an existing dataset for human generation to include a wider range of apparel and more complex backgrounds. This extended dataset features people wearing diverse items such as tops, pants, dresses, skirts, headwear, scarves, shoes, socks, and bags. Additionally, we propose AnyDesign, a diffusion-based method that enables mask-free editing on versatile areas. Users can simply input a human image along with a corresponding prompt in either text or image format. Our approach incorporates Fashion DiT, equipped with a Fashion-Guidance Attention (FGA) module designed to fuse explicit apparel types and CLIP-encoded apparel features. Both Qualitative and quantitative experiments demonstrate that our method delivers high-quality fashion editing and outperforms contemporary text-guided fashion editing methods.

93.1LGApr 5
PRIME: Prototype-Driven Multimodal Pretraining for Cancer Prognosis with Missing Modalities

Kai Yu, Shuang Zhou, Yiran Song et al.

Multimodal self-supervised pretraining offers a promising route to cancer prognosis by integrating histopathology whole-slide images, gene expression, and pathology reports, yet most existing approaches require fully paired and complete inputs. In practice, clinical cohorts are fragmented and often miss one or more modalities, limiting both supervised fusion and scalable multimodal pretraining. We propose PRIME, a missing-aware multimodal self-supervised pretraining framework that learns robust and transferable representations from partially observed cohorts. PRIME maps heterogeneous modality embeddings into a unified token space and introduces a shared prototype memory bank for latent-space semantic imputation via patient-level consensus retrieval, producing structurally aligned tokens without reconstructing raw signals. Two complementary pretraining objectives: inter-modality alignment and post-fusion consistency under structured missingness augmentation, jointly learn representations that remain predictive under arbitrary modality subsets. We evaluate PRIME on The Cancer Genome Atlas with label-free pretraining on 32 cancer types and downstream 5-fold evaluation on five cohorts across overall survival prediction, 3-year mortality classification, and 3-year recurrence classification. PRIME achieves the best macro-average performance among all compared methods, reaching 0.653 C-index, 0.689 AUROC, and 0.637 AUROC on the three tasks, respectively, while improving robustness under test-time missingness and supporting parameter-efficient and label-efficient adaptation. These results support missing-aware multimodal pretraining as a practical strategy for prognosis modeling in fragmented clinical data settings.

LGMay 25, 2025Code
I2MoE: Interpretable Multimodal Interaction-aware Mixture-of-Experts

Jiayi Xin, Sukwon Yun, Jie Peng et al.

Modality fusion is a cornerstone of multimodal learning, enabling information integration from diverse data sources. However, vanilla fusion methods are limited by (1) inability to account for heterogeneous interactions between modalities and (2) lack of interpretability in uncovering the multimodal interactions inherent in the data. To this end, we propose I2MoE (Interpretable Multimodal Interaction-aware Mixture of Experts), an end-to-end MoE framework designed to enhance modality fusion by explicitly modeling diverse multimodal interactions, as well as providing interpretation on a local and global level. First, I2MoE utilizes different interaction experts with weakly supervised interaction losses to learn multimodal interactions in a data-driven way. Second, I2MoE deploys a reweighting model that assigns importance scores for the output of each interaction expert, which offers sample-level and dataset-level interpretation. Extensive evaluation of medical and general multimodal datasets shows that I2MoE is flexible enough to be combined with different fusion techniques, consistently improves task performance, and provides interpretation across various real-world scenarios. Code is available at https://github.com/Raina-Xin/I2MoE.

LGMay 19, 2025Code
Occult: Optimizing Collaborative Communication across Experts for Accelerated Parallel MoE Training and Inference

Shuqing Luo, Pingzhi Li, Jie Peng et al.

Mixture-of-experts (MoE) architectures could achieve impressive computational efficiency with expert parallelism, which relies heavily on all-to-all communication across devices. Unfortunately, such communication overhead typically constitutes a significant portion of the total runtime, hampering the scalability of distributed training and inference for modern MoE models (consuming over $40\%$ runtime in large-scale training). In this paper, we first define collaborative communication to illustrate this intrinsic limitation, and then propose system- and algorithm-level innovations to reduce communication costs. Specifically, given a pair of experts co-activated by one token, we call them "collaborated", which comprises $2$ cases as intra- and inter-collaboration, depending on whether they are kept on the same device. Our pilot investigations reveal that augmenting the proportion of intra-collaboration can accelerate expert parallelism at scale. It motivates us to strategically optimize collaborative communication for accelerated MoE training and inference, dubbed Occult. Our designs are capable of either delivering exact results with reduced communication cost or controllably minimizing the cost with collaboration pruning, materialized by modified fine-tuning. Comprehensive experiments on various MoE-LLMs demonstrate that Occult can be faster than popular state-of-the-art inference or training frameworks (more than $1.5\times$ speed up across multiple tasks and models) with comparable or superior quality compared to the standard fine-tuning. Code is available at $\href{https://github.com/UNITES-Lab/Occult}{https://github.com/UNITES-Lab/Occult}$.

LGFeb 23
A Replicate-and-Quantize Strategy for Plug-and-Play Load Balancing of Sparse Mixture-of-Experts LLMs

Zijie Liu, Jie Peng, Jinhao Duan et al.

Sparse Mixture-of-Experts (SMoE) architectures are increasingly used to scale large language models efficiently, delivering strong accuracy under fixed compute budgets. However, SMoE models often suffer from severe load imbalance across experts, where a small subset of experts receives most tokens while others are underutilized. Prior work has focused mainly on training-time solutions such as routing regularization or auxiliary losses, leaving inference-time behavior, which is critical for deployment, less explored. We present a systematic analysis of expert routing during inference and identify three findings: (i) load imbalance persists and worsens with larger batch sizes, (ii) selection frequency does not reliably reflect expert importance, and (iii) overall expert workload and importance can be estimated using a small calibration set. These insights motivate inference-time mechanisms that rebalance workloads without retraining or router modification. We propose Replicate-and-Quantize (R&Q), a training-free and near-lossless framework for dynamic workload rebalancing. In each layer, heavy-hitter experts are replicated to increase parallel capacity, while less critical experts and replicas are quantized to remain within the original memory budget. We also introduce a Load-Imbalance Score (LIS) to measure routing skew by comparing heavy-hitter load to an equal allocation baseline. Experiments across representative SMoE models and benchmarks show up to 1.4x reduction in imbalance with accuracy maintained within +/-0.6%, enabling more predictable and efficient inference.

CVSep 29, 2025Code
GEM: 3D Gaussian Splatting for Efficient and Accurate Cryo-EM Reconstruction

Huaizhi Qu, Xiao Wang, Gengwei Zhang et al.

Cryo-electron microscopy (cryo-EM) has become a central tool for high-resolution structural biology, yet the massive scale of datasets (often exceeding 100k particle images) renders 3D reconstruction both computationally expensive and memory intensive. Traditional Fourier-space methods are efficient but lose fidelity due to repeated transforms, while recent real-space approaches based on neural radiance fields (NeRFs) improve accuracy but incur cubic memory and computation overhead. Therefore, we introduce GEM, a novel cryo-EM reconstruction framework built on 3D Gaussian Splatting (3DGS) that operates directly in real-space while maintaining high efficiency. Instead of modeling the entire density volume, GEM represents proteins with compact 3D Gaussians, each parameterized by only 11 values. To further improve the training efficiency, we designed a novel gradient computation to 3D Gaussians that contribute to each voxel. This design substantially reduced both memory footprint and training cost. On standard cryo-EM benchmarks, GEM achieves up to 48% faster training and 12% lower memory usage compared to state-of-the-art methods, while improving local resolution by as much as 38.8%. These results establish GEM as a practical and scalable paradigm for cryo-EM reconstruction, unifying speed, efficiency, and high-resolution accuracy. Our code is available at https://github.com/UNITES-Lab/GEM.

LGJun 9, 2025Code
Circumventing Backdoor Space via Weight Symmetry

Jie Peng, Hongwei Yang, Jing Zhao et al.

Deep neural networks are vulnerable to backdoor attacks, where malicious behaviors are implanted during training. While existing defenses can effectively purify compromised models, they typically require labeled data or specific training procedures, making them difficult to apply beyond supervised learning settings. Notably, recent studies have shown successful backdoor attacks across various learning paradigms, highlighting a critical security concern. To address this gap, we propose Two-stage Symmetry Connectivity (TSC), a novel backdoor purification defense that operates independently of data format and requires only a small fraction of clean samples. Through theoretical analysis, we prove that by leveraging permutation invariance in neural networks and quadratic mode connectivity, TSC amplifies the loss on poisoned samples while maintaining bounded clean accuracy. Experiments demonstrate that TSC achieves robust performance comparable to state-of-the-art methods in supervised learning scenarios. Furthermore, TSC generalizes to self-supervised learning frameworks, such as SimCLR and CLIP, maintaining its strong defense capabilities. Our code is available at https://github.com/JiePeng104/TSC.

ROApr 9, 2025Code
CAFE-AD: Cross-Scenario Adaptive Feature Enhancement for Trajectory Planning in Autonomous Driving

Junrui Zhang, Chenjie Wang, Jie Peng et al.

Imitation learning based planning tasks on the nuPlan dataset have gained great interest due to their potential to generate human-like driving behaviors. However, open-loop training on the nuPlan dataset tends to cause causal confusion during closed-loop testing, and the dataset also presents a long-tail distribution of scenarios. These issues introduce challenges for imitation learning. To tackle these problems, we introduce CAFE-AD, a Cross-Scenario Adaptive Feature Enhancement for Trajectory Planning in Autonomous Driving method, designed to enhance feature representation across various scenario types. We develop an adaptive feature pruning module that ranks feature importance to capture the most relevant information while reducing the interference of noisy information during training. Moreover, we propose a cross-scenario feature interpolation module that enhances scenario information to introduce diversity, enabling the network to alleviate over-fitting in dominant scenarios. We evaluate our method CAFE-AD on the challenging public nuPlan Test14-Hard closed-loop simulation benchmark. The results demonstrate that CAFE-AD outperforms state-of-the-art methods including rule-based and hybrid planners, and exhibits the potential in mitigating the impact of long-tail distribution within the dataset. Additionally, we further validate its effectiveness in real-world environments. The code and models will be made available at https://github.com/AlniyatRui/CAFE-AD.

MAFeb 11, 2025
Symbiotic Cooperation for Web Agents: Harnessing Complementary Strengths of Large and Small LLMs

Ruichen Zhang, Mufan Qiu, Zhen Tan et al.

Web browsing agents powered by large language models (LLMs) have shown tremendous potential in automating complex web-based tasks. Existing approaches typically rely on large LLMs (e.g., GPT-4o) to explore web environments and generate trajectory data, which is then used either for demonstration retrieval (for large LLMs) or to distill small LLMs (e.g., Llama3) in a process that remains decoupled from the exploration. In this paper, we propose AgentSymbiotic, an iterative framework that couples data synthesis with task-performance, yielding a "symbiotic improvement" for both large and small LLMs. Our study uncovers a complementary dynamic between LLM types: while large LLMs excel at generating high-quality trajectories for distillation, the distilled small LLMs-owing to their distinct reasoning capabilities-often choose actions that diverge from those of their larger counterparts. This divergence drives the exploration of novel trajectories, thereby enriching the synthesized data. However, we also observe that the performance of small LLMs becomes a bottleneck in this iterative enhancement process. To address this, we propose two innovations in LLM distillation: a speculative data synthesis strategy that mitigates off-policy bias, and a multi-task learning approach designed to boost the reasoning capabilities of the student LLM. Furthermore, we introduce a Hybrid Mode for Privacy Preservation to address user privacy concerns. Evaluated on the WEBARENA benchmark, AgentSymbiotic achieves SOTA performance with both LLM types. Our best Large LLM agent reaches 52%, surpassing the previous best of 45%, while our 8B distilled model demonstrates a competitive 49%, exceeding the prior best of 28%. Code will be released upon acceptance.

LGFeb 5, 2025
TGB-Seq Benchmark: Challenging Temporal GNNs with Complex Sequential Dynamics

Lu Yi, Jie Peng, Yanping Zheng et al.

Future link prediction is a fundamental challenge in various real-world dynamic systems. To address this, numerous temporal graph neural networks (temporal GNNs) and benchmark datasets have been developed. However, these datasets often feature excessive repeated edges and lack complex sequential dynamics, a key characteristic inherent in many real-world applications such as recommender systems and ``Who-To-Follow'' on social networks. This oversight has led existing methods to inadvertently downplay the importance of learning sequential dynamics, focusing primarily on predicting repeated edges. In this study, we demonstrate that existing methods, such as GraphMixer and DyGFormer, are inherently incapable of learning simple sequential dynamics, such as ``a user who has followed OpenAI and Anthropic is more likely to follow AI at Meta next.'' Motivated by this issue, we introduce the Temporal Graph Benchmark with Sequential Dynamics (TGB-Seq), a new benchmark carefully curated to minimize repeated edges, challenging models to learn sequential dynamics and generalize to unseen edges. TGB-Seq comprises large real-world datasets spanning diverse domains, including e-commerce interactions, movie ratings, business reviews, social networks, citation networks and web link networks. Benchmarking experiments reveal that current methods usually suffer significant performance degradation and incur substantial training costs on TGB-Seq, posing new challenges and opportunities for future research. TGB-Seq datasets, leaderboards, and example codes are available at https://tgb-seq.github.io/.

AIMar 8, 2024
Tuning-Free Accountable Intervention for LLM Deployment -- A Metacognitive Approach

Zhen Tan, Jie Peng, Tianlong Chen et al.

Large Language Models (LLMs) have catalyzed transformative advances across a spectrum of natural language processing tasks through few-shot or zero-shot prompting, bypassing the need for parameter tuning. While convenient, this modus operandi aggravates ``hallucination'' concerns, particularly given the enigmatic ``black-box'' nature behind their gigantic model sizes. Such concerns are exacerbated in high-stakes applications (e.g., healthcare), where unaccountable decision errors can lead to devastating consequences. In contrast, human decision-making relies on nuanced cognitive processes, such as the ability to sense and adaptively correct misjudgments through conceptual understanding. Drawing inspiration from human cognition, we propose an innovative \textit{metacognitive} approach, dubbed \textbf{CLEAR}, to equip LLMs with capabilities for self-aware error identification and correction. Our framework facilitates the construction of concept-specific sparse subnetworks that illuminate transparent decision pathways. This provides a novel interface for model \textit{intervention} after deployment. Our intervention offers compelling advantages: (\textit{i})~at deployment or inference time, our metacognitive LLMs can self-consciously identify potential mispredictions with minimum human involvement, (\textit{ii})~the model has the capability to self-correct its errors efficiently, obviating the need for additional tuning, and (\textit{iii})~the rectification procedure is not only self-explanatory but also user-friendly, enhancing the interpretability and accessibility of the model. By integrating these metacognitive features, our approach pioneers a new path toward engendering greater trustworthiness and accountability in the deployment of LLMs.

CLMay 1, 2025
Unlearning Sensitive Information in Multimodal LLMs: Benchmark and Attack-Defense Evaluation

Vaidehi Patil, Yi-Lin Sung, Peter Hase et al.

LLMs trained on massive datasets may inadvertently acquire sensitive information such as personal details and potentially harmful content. This risk is further heightened in multimodal LLMs as they integrate information from multiple modalities (image and text). Adversaries can exploit this knowledge through multimodal prompts to extract sensitive details. Evaluating how effectively MLLMs can forget such information (targeted unlearning) necessitates the creation of high-quality, well-annotated image-text pairs. While prior work on unlearning has focused on text, multimodal unlearning remains underexplored. To address this gap, we first introduce a multimodal unlearning benchmark, UnLOK-VQA (Unlearning Outside Knowledge VQA), as well as an attack-and-defense framework to evaluate methods for deleting specific multimodal knowledge from MLLMs. We extend a visual question-answering dataset using an automated pipeline that generates varying-proximity samples for testing generalization and specificity, followed by manual filtering for maintaining high quality. We then evaluate six defense objectives against seven attacks (four whitebox, three blackbox), including a novel whitebox method leveraging interpretability of hidden states. Our results show multimodal attacks outperform text- or image-only ones, and that the most effective defense removes answer information from internal model states. Additionally, larger models exhibit greater post-editing robustness, suggesting that scale enhances safety. UnLOK-VQA provides a rigorous benchmark for advancing unlearning in MLLMs.

LGOct 17, 2024
Harnessing Your DRAM and SSD for Sustainable and Accessible LLM Inference with Mixed-Precision and Multi-level Caching

Jie Peng, Zhang Cao, Huaizhi Qu et al.

Although Large Language Models (LLMs) have demonstrated remarkable capabilities, their massive parameter counts and associated extensive computing make LLMs' deployment the main part of carbon emission from nowadays AI applications. Compared to modern GPUs like H$100$, it would be significantly carbon-sustainable if we could leverage old-fashioned GPUs such as M$40$ (as shown in Figure 1, M$40$ only has one third carbon emission of H$100$'s) for LLM servings. However, the limited High Bandwidth Memory (HBM) available on such GPU often cannot support the loading of LLMs due to the gigantic model size and intermediate activation data, making their serving challenging. For instance, a LLaMA2 model with $70$B parameters typically requires $128$GB for inference, which substantially surpasses $24$GB HBM in a $3090$ GPU and remains infeasible even considering the additional $64$GB DRAM. To address this challenge, this paper proposes a mixed-precision with a model modularization algorithm to enable LLM inference on outdated hardware with resource constraints. (The precision denotes the numerical precision like FP16, INT8, INT4) and multi-level caching (M2Cache).) Specifically, our M2Cache first modulizes neurons in LLM and creates their importance ranking. Then, it adopts a dynamic sparse mixed-precision quantization mechanism in weight space to reduce computational demands and communication overhead at each decoding step. It collectively lowers the operational carbon emissions associated with LLM inference. Moreover, M2Cache introduces a three-level cache management system with HBM, DRAM, and SSDs that complements the dynamic sparse mixed-precision inference. To enhance communication efficiency, M2Cache maintains a neuron-level mixed-precision LRU cache in HBM, a larger layer-aware cache in DRAM, and a full model in SSD.

CLMay 8, 2024
Multi-level Shared Knowledge Guided Learning for Knowledge Graph Completion

Yongxue Shan, Jie Zhou, Jie Peng et al.

In the task of Knowledge Graph Completion (KGC), the existing datasets and their inherent subtasks carry a wealth of shared knowledge that can be utilized to enhance the representation of knowledge triplets and overall performance. However, no current studies specifically address the shared knowledge within KGC. To bridge this gap, we introduce a multi-level Shared Knowledge Guided learning method (SKG) that operates at both the dataset and task levels. On the dataset level, SKG-KGC broadens the original dataset by identifying shared features within entity sets via text summarization. On the task level, for the three typical KGC subtasks - head entity prediction, relation prediction, and tail entity prediction - we present an innovative multi-task learning architecture with dynamically adjusted loss weights. This approach allows the model to focus on more challenging and underperforming tasks, effectively mitigating the imbalance of knowledge sharing among subtasks. Experimental results demonstrate that SKG-KGC outperforms existing text-based methods significantly on three well-known datasets, with the most notable improvement on WN18RR.

LGMay 31, 2025
TIDFormer: Exploiting Temporal and Interactive Dynamics Makes A Great Dynamic Graph Transformer

Jie Peng, Zhewei Wei, Yuhang Ye

Due to the proficiency of self-attention mechanisms (SAMs) in capturing dependencies in sequence modeling, several existing dynamic graph neural networks (DGNNs) utilize Transformer architectures with various encoding designs to capture sequential evolutions of dynamic graphs. However, the effectiveness and efficiency of these Transformer-based DGNNs vary significantly, highlighting the importance of properly defining the SAM on dynamic graphs and comprehensively encoding temporal and interactive dynamics without extra complex modules. In this work, we propose TIDFormer, a dynamic graph TransFormer that fully exploits Temporal and Interactive Dynamics in an efficient manner. We clarify and verify the interpretability of our proposed SAM, addressing the open problem of its uninterpretable definitions on dynamic graphs in previous works. To model the temporal and interactive dynamics, respectively, we utilize the calendar-based time partitioning information and extract informative interaction embeddings for both bipartite and non-bipartite graphs using merely the sampled first-order neighbors. In addition, we jointly model temporal and interactive features by capturing potential changes in historical interaction patterns through a simple decomposition. We conduct extensive experiments on several dynamic graph datasets to verify the effectiveness and efficiency of TIDFormer. The experimental results demonstrate that TIDFormer excels, outperforming state-of-the-art models across most datasets and experimental settings. Furthermore, TIDFormer exhibits significant efficiency advantages compared to previous Transformer-based methods.

LGApr 2, 2025
Advancing MoE Efficiency: A Collaboration-Constrained Routing (C2R) Strategy for Better Expert Parallelism Design

Mohan Zhang, Pingzhi Li, Jie Peng et al.

Mixture-of-Experts (MoE) has successfully scaled up models while maintaining nearly constant computing costs. By employing a gating network to route input tokens, it selectively activates a subset of expert networks to process the corresponding token embeddings. However, in practice, the efficiency of MoE is challenging to achieve due to two key reasons: imbalanced expert activation, which leads to substantial idle time during model or expert parallelism, and insufficient capacity utilization; massive communication overhead, induced by numerous expert routing combinations in expert parallelism at the system level. Previous works typically formulate it as the load imbalance issue characterized by the gating network favoring certain experts over others or attribute it to static execution which fails to adapt to the dynamic expert workload at runtime. In this paper, we exploit it from a brand new perspective, a higher-order view and analysis of MoE routing policies: expert collaboration and specialization where some experts tend to activate broadly with others (collaborative), while others are more likely to activate only with a specific subset of experts (specialized). Our experiments reveal that most experts tend to be overly collaborative, leading to increased communication overhead from repeatedly sending tokens to different accelerators. To this end, we propose a novel collaboration-constrained routing (C2R) strategy to encourage more specialized expert groups, as well as to improve expert utilization, and present an efficient implementation of MoE that further leverages expert specialization. We achieve an average performance improvement of 0.51% and 0.33% on LLaMA-MoE and Qwen-MoE respectively across ten downstream NLP benchmarks, and reduce the all2all communication costs between GPUs, bringing an extra 20%-30% total running time savings on top of the existing SoTA, i.e. MegaBlocks.

OCMar 20, 2025
Optimal Complexity in Byzantine-Robust Distributed Stochastic Optimization with Data Heterogeneity

Qiankun Shi, Jie Peng, Kun Yuan et al.

In this paper, we establish tight lower bounds for Byzantine-robust distributed first-order stochastic optimization methods in both strongly convex and non-convex stochastic optimization. We reveal that when the distributed nodes have heterogeneous data, the convergence error comprises two components: a non-vanishing Byzantine error and a vanishing optimization error. We establish the lower bounds on the Byzantine error and on the minimum number of queries to a stochastic gradient oracle required to achieve an arbitrarily small optimization error. Nevertheless, we identify significant discrepancies between our established lower bounds and the existing upper bounds. To fill this gap, we leverage the techniques of Nesterov's acceleration and variance reduction to develop novel Byzantine-robust distributed stochastic optimization methods that provably match these lower bounds, up to logarithmic factors, implying that our established lower bounds are tight.

95.4LGApr 3
Understanding the Role of Hallucination in Reinforcement Post-Training of Multimodal Reasoning Models

Gengwei Zhang, Jie Peng, Zhen Tan et al.

The recent success of reinforcement learning (RL) in large reasoning models has inspired the growing adoption of RL for post-training Multimodal Large Language Models (MLLMs) to enhance their visual reasoning capabilities. Although many studies have reported improved performance, it remains unclear whether RL training truly enables models to learn from visual information. In this work, we propose the Hallucination-as-Cue Framework, an analytical framework designed to investigate the effects of RL-based post-training on multimodal reasoning models from the perspective of model hallucination. Specifically, we introduce hallucination-inductive, modality-specific corruptions that remove or replace essential information required to derive correct answers, thereby forcing the model to reason by hallucination. By applying these corruptions during both training and evaluation, our framework provides a unique perspective for diagnosing RL training dynamics and understanding the intrinsic properties of datasets. Through extensive experiments and analyses across multiple multimodal reasoning benchmarks, we reveal that the role of model hallucination for RL-training is more significant than previously recognized. For instance, we find that RL post-training under purely hallucination-inductive settings can still significantly improve models' reasoning performance, and in some cases even outperform standard training. These findings challenge prevailing assumptions about MLLM reasoning training and motivate the development of more modality-aware RL-based training designs.

AIJul 4, 2025
GDGB: A Benchmark for Generative Dynamic Text-Attributed Graph Learning

Jie Peng, Jiarui Ji, Runlin Lei et al.

Dynamic Text-Attributed Graphs (DyTAGs), which intricately integrate structural, temporal, and textual attributes, are crucial for modeling complex real-world systems. However, most of the existing DyTAG datasets exhibit poor textual quality, which severely limits their utility for DyTAG generation tasks requiring semantically rich inputs. Additionally, prior work mainly focuses on discriminative tasks on DyTAGs, resulting in a lack of standardized task formulations and evaluation protocols tailored for DyTAG generation. To address these critical issues, we propose Generative DyTAG Benchmark (GDGB), which comprises eight meticulously curated DyTAG datasets with high-quality textual features for both nodes and edges, overcoming limitations of prior datasets. Building on GDGB, we define two novel DyTAG generation tasks: Transductive Dynamic Graph Generation (TDGG) and Inductive Dynamic Graph Generation (IDGG). TDGG transductively generates a target DyTAG based on the given source and destination node sets, while the more challenging IDGG introduces new node generation to inductively model the dynamic expansion of real-world graph data. To enable holistic evaluation, we design multifaceted metrics that assess the structural, temporal, and textual quality of the generated DyTAGs. We further propose GAG-General, an LLM-based multi-agent generative framework tailored for reproducible and robust benchmarking of DyTAG generation. Experimental results demonstrate that GDGB enables rigorous evaluation of TDGG and IDGG, with key insights revealing the critical interplay of structural and textual features in DyTAG generation. These findings establish GDGB as a foundational resource for advancing generative DyTAG research and unlocking further practical applications in DyTAG generation. GDGB datasets, source codes, and leaderboards are available at \href{https://gdgb-algo.github.io/}{here}.

LGApr 21, 2024
Mean Aggregator is More Robust than Robust Aggregators under Label Poisoning Attacks on Distributed Heterogeneous Data

Jie Peng, Weiyu Li, Stefan Vlaski et al.

Robustness to malicious attacks is of paramount importance for distributed learning. Existing works usually consider the classical Byzantine attacks model, which assumes that some workers can send arbitrarily malicious messages to the server and disturb the aggregation steps of the distributed learning process. To defend against such worst-case Byzantine attacks, various robust aggregators have been proposed. They are proven to be effective and much superior to the often-used mean aggregator. In this paper, however, we demonstrate that the robust aggregators are too conservative for a class of weak but practical malicious attacks, as known as label poisoning attacks, where the sample labels of some workers are poisoned. Surprisingly, we are able to show that the mean aggregator is more robust than the state-of-the-art robust aggregators in theory, given that the distributed data are sufficiently heterogeneous. In fact, the learning error of the mean aggregator is proven to be order-optimal in this case. Experimental results corroborate our theoretical findings, showing the superiority of the mean aggregator under label poisoning attacks.

LGMar 3, 2025
GRNFormer: A Biologically-Guided Framework for Integrating Gene Regulatory Networks into RNA Foundation Models

Mufan Qiu, Xinyu Hu, Fengwei Zhan et al.

Foundation models for single-cell RNA sequencing (scRNA-seq) have shown promising capabilities in capturing gene expression patterns. However, current approaches face critical limitations: they ignore biological prior knowledge encoded in gene regulatory relationships and fail to leverage multi-omics signals that could provide complementary regulatory insights. In this paper, we propose GRNFormer, a new framework that systematically integrates multi-scale Gene Regulatory Networks (GRNs) inferred from multi-omics data into RNA foundation model training. Our framework introduces two key innovations. First, we introduce a pipeline for constructing hierarchical GRNs that capture regulatory relationships at both cell-type-specific and cell-specific resolutions. Second, we design a structure-aware integration framework that addresses the information asymmetry in GRNs through two technical advances: (1) A graph topological adapter using multi-head cross-attention to weight regulatory relationships dynamically, and (2) a novel edge perturbation strategy that perturb GRNs with biologically-informed co-expression links to augment graph neural network training. Comprehensive experiments have been conducted on three representative downstream tasks across multiple model architectures to demonstrate the effectiveness of GRNFormer. It achieves consistent improvements over state-of-the-art (SoTA) baselines: $3.6\%$ increase in drug response prediction correlation, $9.6\%$ improvement in single-cell drug classification AUC, and $1.1\%$ average gain in gene perturbation prediction accuracy.

CLJan 29, 2025
Dialogue is Better Than Monologue: Instructing Medical LLMs via Strategical Conversations

Zijie Liu, Xinyu Zhao, Jie Peng et al.

Current medical AI systems often fail to replicate real-world clinical reasoning, as they are predominantly trained and evaluated on static text and question-answer tasks. These tuning methods and benchmarks overlook critical aspects like evidence-based reasoning and handling distracting information. To bridge this gap, we introduce a novel benchmark that simulates real-world diagnostic scenarios, integrating noise and difficulty levels aligned with USMLE standards. Moreover, we explore dialogue-based fine-tuning, which transforms static datasets into conversational formats to better capture iterative reasoning processes. Experiments show that dialogue-tuned models outperform traditional methods, with improvements of $9.64\%$ in multi-round reasoning scenarios and $6.18\%$ in accuracy in a noisy environment. Our findings highlight dialogue tuning as a promising approach for advancing clinically aligned and robust medical AI systems.

ARMar 7
Mozart: Modularized and Efficient MoE Training on 3.5D Wafer-Scale Chiplet Architectures

Shuqing Luo, Ye Han, Pingzhi Li et al.

Mixture-of-Experts (MoE) architecture offers enhanced efficiency for Large Language Models (LLMs) with modularized computation, yet its inherent sparsity poses significant hardware deployment challenges, including memory locality issues, communication overhead, and inefficient computing resource utilization. Inspired by the modular organization of the human brain, we propose Mozart, a novel algorithm-hardware co-design framework tailored for efficient training of MoE-based LLMs on 3.5D wafer-scale chiplet architectures. On the algorithm side, Mozart exploits the inherent modularity of chiplets and introduces: (1) an expert allocation strategy that enables efficient on-package all-to-all communication, and (2) a fine-grained scheduling mechanism that improves communication-computation overlap through streaming tokens and experts. On the architecture side, Mozart adaptively co-locates heterogeneous modules on specialized chiplets with a 2.5D NoP-Tree topology and hierarchical memory structure. Evaluation across three popular MoE models demonstrates significant efficiency gains, enabling more effective parallelization and resource utilization for large-scale modularized MoE-LLMs.

LGNov 22, 2025
Vulnerability-Aware Robust Multimodal Adversarial Training

Junrui Zhang, Xinyu Zhao, Jie Peng et al.

Multimodal learning has shown significant superiority on various tasks by integrating multiple modalities. However, the interdependencies among modalities increase the susceptibility of multimodal models to adversarial attacks. Existing methods mainly focus on attacks on specific modalities or indiscriminately attack all modalities. In this paper, we find that these approaches ignore the differences between modalities in their contribution to final robustness, resulting in suboptimal robustness performance. To bridge this gap, we introduce Vulnerability-Aware Robust Multimodal Adversarial Training (VARMAT), a probe-in-training adversarial training method that improves multimodal robustness by identifying the vulnerability of each modality. To be specific, VARMAT first explicitly quantifies the vulnerability of each modality, grounded in a first-order approximation of the attack objective (Probe). Then, we propose a targeted regularization term that penalizes modalities with high vulnerability, guiding robust learning while maintaining task accuracy (Training). We demonstrate the enhanced robustness of our method across multiple multimodal datasets involving diverse modalities. Finally, we achieve {12.73%, 22.21%, 11.19%} robustness improvement on three multimodal datasets, revealing a significant blind spot in multimodal adversarial training.

LGOct 29, 2025
Beyond Leakage and Complexity: Towards Realistic and Efficient Information Cascade Prediction

Jie Peng, Rui Wang, Qiang Wang et al.

Information cascade popularity prediction is a key problem in analyzing content diffusion in social networks. However, current related works suffer from three critical limitations: (1) temporal leakage in current evaluation--random cascade-based splits allow models to access future information, yielding unrealistic results; (2) feature-poor datasets that lack downstream conversion signals (e.g., likes, comments, or purchases), which limits more practical applications; (3) computational inefficiency of complex graph-based methods that require days of training for marginal gains. We systematically address these challenges from three perspectives: task setup, dataset construction, and model design. First, we propose a time-ordered splitting strategy that chronologically partitions data into consecutive windows, ensuring models are evaluated on genuine forecasting tasks without future information leakage. Second, we introduce Taoke, a large-scale e-commerce cascade dataset featuring rich promoter/product attributes and ground-truth purchase conversions--capturing the complete diffusion lifecycle from promotion to monetization. Third, we develop CasTemp, a lightweight framework that efficiently models cascade dynamics through temporal walks, Jaccard-based neighbor selection for inter-cascade dependencies, and GRU-based encoding with time-aware attention. Under leak-free evaluation, CasTemp achieves state-of-the-art performance across four datasets with orders-of-magnitude speedup. Notably, it excels at predicting second-stage popularity conversions--a practical task critical for real-world applications.

LGOct 19, 2025
Leave It to the Experts: Detecting Knowledge Distillation via MoE Expert Signatures

Pingzhi Li, Morris Yu-Chao Huang, Zhen Tan et al.

Knowledge Distillation (KD) accelerates training of large language models (LLMs) but poses intellectual property protection and LLM diversity risks. Existing KD detection methods based on self-identity or output similarity can be easily evaded through prompt engineering. We present a KD detection framework effective in both white-box and black-box settings by exploiting an overlooked signal: the transfer of MoE "structural habits", especially internal routing patterns. Our approach analyzes how different experts specialize and collaborate across various inputs, creating distinctive fingerprints that persist through the distillation process. To extend beyond the white-box setup and MoE architectures, we further propose Shadow-MoE, a black-box method that constructs proxy MoE representations via auxiliary distillation to compare these patterns between arbitrary model pairs. We establish a comprehensive, reproducible benchmark that offers diverse distilled checkpoints and an extensible framework to facilitate future research. Extensive experiments demonstrate >94% detection accuracy across various scenarios and strong robustness to prompt-based evasion, outperforming existing baselines while highlighting the structural habits transfer in LLMs.

CVApr 17, 2025
Self-Supervised Pre-training with Combined Datasets for 3D Perception in Autonomous Driving

Shumin Wang, Zhuoran Yang, Lidian Wang et al.

The significant achievements of pre-trained models leveraging large volumes of data in the field of NLP and 2D vision inspire us to explore the potential of extensive data pre-training for 3D perception in autonomous driving. Toward this goal, this paper proposes to utilize massive unlabeled data from heterogeneous datasets to pre-train 3D perception models. We introduce a self-supervised pre-training framework that learns effective 3D representations from scratch on unlabeled data, combined with a prompt adapter based domain adaptation strategy to reduce dataset bias. The approach significantly improves model performance on downstream tasks such as 3D object detection, BEV segmentation, 3D object tracking, and occupancy prediction, and shows steady performance increase as the training data volume scales up, demonstrating the potential of continually benefit 3D perception models for autonomous driving. We will release the source code to inspire further investigations in the community.

LGJan 30, 2025
Continually Evolved Multimodal Foundation Models for Cancer Prognosis

Jie Peng, Shuang Zhou, Longwei Yang et al.

Cancer prognosis is a critical task that involves predicting patient outcomes and survival rates. To enhance prediction accuracy, previous studies have integrated diverse data modalities, such as clinical notes, medical images, and genomic data, leveraging their complementary information. However, existing approaches face two major limitations. First, they struggle to incorporate newly arrived data with varying distributions into training, such as patient records from different hospitals, thus rendering sub-optimal generalizability and limited utility in real-world applications. Second, most multimodal integration methods rely on simplistic concatenation or task-specific pipelines, which fail to capture the complex interdependencies across modalities. To address these, we propose a continually evolving multi-modal foundation model. Extensive experiments on the TCGA dataset demonstrate the effectiveness of our approach, highlighting its potential to advance cancer prognosis by enabling robust and adaptive multimodal integration.

ROAug 13, 2021
Reinforcement Learning for Robot Navigation with Adaptive Forward Simulation Time (AFST) in a Semi-Markov Model

Yu'an Chen, Ruosong Ye, Ziyang Tao et al.

Deep reinforcement learning (DRL) algorithms have proven effective in robot navigation, especially in unknown environments, by directly mapping perception inputs into robot control commands. However, most existing methods ignore the local minimum problem in navigation and thereby cannot handle complex unknown environments. In this paper, we propose the first DRL-based navigation method modeled by a semi-Markov decision process (SMDP) with continuous action space, named Adaptive Forward Simulation Time (AFST), to overcome this problem. Specifically, we reduce the dimensions of the action space and improve the distributed proximal policy optimization (DPPO) algorithm for the specified SMDP problem by modifying its GAE to better estimate the policy gradient in SMDPs. Experiments in various unknown environments demonstrate the effectiveness of AFST.

LGSep 17, 2020
Byzantine-Robust Variance-Reduced Federated Learning over Distributed Non-i.i.d. Data

Jie Peng, Zhaoxian Wu, Qing Ling et al.

We consider the federated learning problem where data on workers are not independent and identically distributed (i.i.d.). During the learning process, an unknown number of Byzantine workers may send malicious messages to the central node, leading to remarkable learning error. Most of the Byzantine-robust methods address this issue by using robust aggregation rules to aggregate the received messages, but rely on the assumption that all the regular workers have i.i.d. data, which is not the case in many federated learning applications. In light of the significance of reducing stochastic gradient noise for mitigating the effect of Byzantine attacks, we use a resampling strategy to reduce the impact of both inner variation (that describes the sample heterogeneity on every regular worker) and outer variation (that describes the sample heterogeneity among the regular workers), along with a stochastic average gradient algorithm to gradually eliminate the inner variation. The variance-reduced messages are then aggregated with a robust geometric median operator. We prove that the proposed method reaches a neighborhood of the optimal solution at a linear convergence rate and the learning error is determined by the number of Byzantine workers. Numerical experiments corroborate the theoretical results and show that the proposed method outperforms the state-of-the-arts in the non-i.i.d. setting.

OCMay 12, 2020
Byzantine-Robust Decentralized Stochastic Optimization over Static and Time-Varying Networks

Jie Peng, Weiyu Li, Qing Ling

In this paper, we consider the Byzantine-robust stochastic optimization problem defined over decentralized static and time-varying networks, where the agents collaboratively minimize the summation of expectations of stochastic local cost functions, but some of the agents are unreliable due to data corruptions, equipment failures or cyber-attacks. The unreliable agents, which are called as Byzantine agents thereafter, can send faulty values to their neighbors and bias the optimization process. Our key idea to handle the Byzantine attacks is to formulate a total variation (TV) norm-penalized approximation of the Byzantine-free problem, where the penalty term forces the local models of regular agents to be close, but also allows the existence of outliers from the Byzantine agents. A stochastic subgradient method is applied to solve the penalized problem. We prove that the proposed method reaches a neighborhood of the Byzantine-free optimal solution, and the size of neighborhood is determined by the number of Byzantine agents and the network topology. Numerical experiments corroborate the theoretical analysis, as well as demonstrate the robustness of the proposed method to Byzantine attacks and its superior performance comparing to existing methods.

MLApr 11, 2018
Estimating Time-Varying Graphical Models

Jilei Yang, Jie Peng

In this paper, we study time-varying graphical models based on data measured over a temporal grid. Such models are motivated by the needs to describe and understand evolving interacting relationships among a set of random variables in many real applications, for instance the study of how stocks interact with each other and how such interactions change over time. We propose a new model, LOcal Group Graphical Lasso Estimation (loggle), under the assumption that the graph topology changes gradually over time. Specifically, loggle uses a novel local group-lasso type penalty to efficiently incorporate information from neighboring time points and to impose structural smoothness of the graphs. We implement an ADMM based algorithm to fit the loggle model. This algorithm utilizes blockwise fast computation and pseudo-likelihood approximation to improve computational efficiency. An R package loggle has also been developed. We evaluate the performance of loggle by simulation experiments. We also apply loggle to S&P 500 stock price data and demonstrate that loggle is able to reveal the interacting relationships among stocks and among industrial sectors in a time period that covers the recent global financial crisis.