Minh-Khoi Pham

Elia Moscoso Thompson, Andrea Ranieri, Silvia Biasotti et al.

This paper describes the methods submitted for evaluation to the SHREC 2022 track on pothole and crack detection in the road pavement. A total of 7 different runs for the semantic segmentation of the road surface are compared, 6 from the participants plus a baseline method. All methods exploit Deep Learning techniques and their performance is tested using the same environment (i.e.: a single Jupyter notebook). A training set, composed of 3836 semantic segmentation image/mask pairs and 797 RGB-D video clips collected with the latest depth cameras was made available to the participants. The methods are then evaluated on the 496 image/mask pairs in the validation set, on the 504 pairs in the test set and finally on 8 video clips. The analysis of the results is based on quantitative metrics for image segmentation and qualitative analysis of the video clips. The participation and the results show that the scenario is of great interest and that the use of RGB-D data is still challenging in this context.

Thao Thi Phuong Dao, Tan-Cong Nguyen, Trong-Le Do et al.

Abscesses in the head and neck represent an acute infectious process that can potentially lead to sepsis or mortality if not diagnosed and managed promptly. Accurate detection and delineation of these lesions on imaging are essential for diagnosis, treatment planning, and surgical intervention. In this study, we introduce AbscessHeNe, a curated and comprehensively annotated dataset comprising 4,926 contrast-enhanced CT slices with clinically confirmed head and neck abscesses. The dataset is designed to facilitate the development of robust semantic segmentation models that can accurately delineate abscess boundaries and evaluate deep neck space involvement, thereby supporting informed clinical decision-making. To establish performance baselines, we evaluate several state-of-the-art segmentation architectures, including CNN, Transformer, and Mamba-based models. The highest-performing model achieved a Dice Similarity Coefficient of 0.39, Intersection-over-Union of 0.27, and Normalized Surface Distance of 0.67, indicating the challenges of this task and the need for further research. Beyond segmentation, AbscessHeNe is structured for future applications in content-based multimedia indexing and case-based retrieval. Each CT scan is linked with pixel-level annotations and clinical metadata, providing a foundation for building intelligent retrieval systems and supporting knowledge-driven clinical workflows. The dataset will be made publicly available at https://github.com/drthaodao3101/AbscessHeNe.git.

Thao Thi Phuong Dao, Tan-Cong Nguyen, Nguyen Chi Thanh et al.

Head and neck masses are space-occupying lesions that can compress the airway and esophagus and may affect nerves and blood vessels. Available public datasets primarily focus on malignant lesions and often overlook other space-occupying conditions in this region. To address this gap, we introduce MasHeNe, an initial dataset of 3,779 contrast-enhanced CT slices that includes both tumors and cysts with pixel-level annotations. We also establish a benchmark using standard segmentation baselines and report common metrics to enable fair comparison. In addition, we propose the Windowing-Enhanced Mamba with Frequency integration (WEMF) model. WEMF applies tri-window enhancement to enrich the input appearance before feature extraction. It further uses multi-frequency attention to fuse information across skip connections within a U-shaped Mamba backbone. On MasHeNe, WEMF attains the best performance among evaluated methods, with a Dice of 70.45%, IoU of 66.89%, NSD of 72.33%, and HD95 of 5.12 mm. This model indicates stable and strong results on this challenging task. MasHeNe provides a benchmark for head-and-neck mass segmentation beyond malignancy-only datasets. The observed error patterns also suggest that this task remains challenging and requires further research. Our dataset and code are available at https://github.com/drthaodao3101/MasHeNe.git.

Minh-Khoi Pham, Luca Cotugno, Alina Sirbu et al.

Predicting time-to-event outcomes such as mortality is a fundamental task in clinical decision-making, commonly addressed through survival analysis. While classical statistical and deep learning approaches have been widely studied, they typically require task-specific training and sufficient labeled data. Recent advances in tabular foundation models offer a new paradigm by learning general-purpose representations for structured data. However, their applicability to censored time-to-event prediction in clinical settings remains underexplored, as typical applications are restricted to discrete classification rather than survival analysis tasks. In this work, we propose a lightweight adaptation approach for applying tabular foundation models to clinical survival analysis by directly training a survival-aware head on top of the pretrained representations. We study representative architectures, including TabPFN, TabDPT, and TabICL, and adapt them using a multi-task logistic regression (MTLR) head to model right-censored time-to-event outcomes. We evaluate this approach on a diverse set of public survival benchmarks and two large-scale ICU cohorts, MIMIC-IV and eICU. Our results show that this transfer learning approach achieves competitive or superior performance compared to strong baselines. On MIMIC-IV, TabDPT-FT-MTLR reaches a C-index of 0.856, corresponding to a relative improvement of +1.4% over the best non-FM baseline (DeepSurv, 0.844) and +6.7% over the best zero-shot model (0.802). On eICU, TabICL-FT-MTLR achieves 0.797, yielding gains of +1.7% (DeepSurv, 0.784) and +6.4% (0.749), respectively. These findings highlight the importance of combining pretrained tabular representations with survival-aware objectives and suggest that tabular foundation models provide a practical and effective alternative for clinical survival prediction.

Minh-Khoi Pham, Thang-Long Nguyen Ho, Thao Thi Phuong Dao et al.

Clinical prediction from structured electronic health records (EHRs) is challenging due to high dimensionality, heterogeneity, class imbalance, and distribution shift. While tabular in-context learning (TICL) and retrieval-augmented methods perform well on generic benchmarks, their behavior in clinical settings remains unclear. We present a multi-cohort EHR benchmark comparing classical, deep tabular, and TICL models across varying data scale, feature dimensionality, outcome rarity, and cross-cohort generalization. PFN-based TICL models are sample-efficient in low-data regimes but degrade under naive distance-based retrieval as heterogeneity and imbalance increase. We propose AWARE, a task-aligned retrieval framework using supervised embedding learning and lightweight adapters. AWARE improves AUPRC by up to 12.2% under extreme imbalance, with gains increasing with data complexity. Our results identify retrieval quality and retrieval-inference alignment as key bottlenecks for deploying tabular in-context learning in clinical prediction.

Minh-Khoi Pham, Tai Tan Mai, Martin Crane et al.

Carbapenemase-Producing Enterobacteriace poses a critical concern for infection prevention and control in hospitals. However, predictive modeling of previously highlighted CPE-associated risks such as readmission, mortality, and extended length of stay (LOS) remains underexplored, particularly with modern deep learning approaches. This study introduces an eXplainable AI modeling framework to investigate CPE impact on patient outcomes from Electronic Medical Records data of an Irish hospital. We analyzed an inpatient dataset from an Irish acute hospital, incorporating diagnostic codes, ward transitions, patient demographics, infection-related variables and contact network features. Several Transformer-based architectures were benchmarked alongside traditional machine learning models. Clinical outcomes were predicted, and XAI techniques were applied to interpret model decisions. Our framework successfully demonstrated the utility of Transformer-based models, with TabTransformer consistently outperforming baselines across multiple clinical prediction tasks, especially for CPE acquisition (AUROC and sensitivity). We found infection-related features, including historical hospital exposure, admission context, and network centrality measures, to be highly influential in predicting patient outcomes and CPE acquisition risk. Explainability analyses revealed that features like "Area of Residence", "Admission Ward" and prior admissions are key risk factors. Network variables like "Ward PageRank" also ranked highly, reflecting the potential value of structural exposure information. This study presents a robust and explainable AI framework for analyzing complex EMR data to identify key risk factors and predict CPE-related outcomes. Our findings underscore the superior performance of the Transformer models and highlight the importance of diverse clinical and network features.