Joaquin Gajardo

Danya Li, Joaquin Gajardo, Michele Volpi et al.

Crop maps are crucial for agricultural monitoring and food management and can additionally support domain-specific applications, such as setting cold supply chain infrastructure in developing countries. Machine learning (ML) models, combined with freely-available satellite imagery, can be used to produce cost-effective and high spatial-resolution crop maps. However, accessing ground truth data for supervised learning is especially challenging in developing countries due to factors such as smallholding and fragmented geography, which often results in a lack of crop type maps or even reliable cropland maps. Our area of interest for this study lies in Himachal Pradesh, India, where we aim at producing an open-access binary cropland map at 10-meter resolution for the Kullu, Shimla, and Mandi districts. To this end, we developed an ML pipeline that relies on Sentinel-2 satellite images time series. We investigated two pixel-based supervised classifiers, support vector machines (SVM) and random forest (RF), which are used to classify per-pixel time series for binary cropland mapping. The ground truth data used for training, validation and testing was manually annotated from a combination of field survey reference points and visual interpretation of very high resolution (VHR) imagery. We trained and validated the models via spatial cross-validation to account for local spatial autocorrelation and selected the RF model due to overall robustness and lower computational cost. We tested the generalization capability of the chosen model at the pixel level by computing the accuracy, recall, precision, and F1-score on hold-out test sets of each district, achieving an average accuracy for the RF (our best model) of 87%. We used this model to generate a cropland map for three districts of Himachal Pradesh, spanning 14,600 km2, which improves the resolution and quality of existing public maps.

Daiwei Zhang, Joaquin Gajardo, Tomislav Medic et al.

Automated extraction of plant morphological traits is crucial for supporting crop breeding and agricultural management through high-throughput field phenotyping (HTFP). Solutions based on multi-view RGB images are attractive due to their scalability and affordability, enabling volumetric measurements that 2D approaches cannot directly capture. While advanced methods like Neural Radiance Fields (NeRFs) have shown promise, their application has been limited to counting or extracting traits from only a few plants or organs. Furthermore, accurately measuring complex structures like individual wheat heads-essential for studying crop yields-remains particularly challenging due to occlusions and the dense arrangement of crop canopies in field conditions. The recent development of 3D Gaussian Splatting (3DGS) offers a promising alternative for HTFP due to its high-quality reconstructions and explicit point-based representation. In this paper, we present Wheat3DGS, a novel approach that leverages 3DGS and the Segment Anything Model (SAM) for precise 3D instance segmentation and morphological measurement of hundreds of wheat heads automatically, representing the first application of 3DGS to HTFP. We validate the accuracy of wheat head extraction against high-resolution laser scan data, obtaining per-instance mean absolute percentage errors of 15.1%, 18.3%, and 40.2% for length, width, and volume. We provide additional comparisons to NeRF-based approaches and traditional Muti-View Stereo (MVS), demonstrating superior results. Our approach enables rapid, non-destructive measurements of key yield-related traits at scale, with significant implications for accelerating crop breeding and improving our understanding of wheat development.

Joaquin Gajardo, Michele Volpi, Daniel Onwude et al.

Cropland maps are essential for remote sensing-based agricultural monitoring, providing timely insights without extensive field surveys. Machine learning enables large-scale mapping but depends on geo-referenced ground-truth data, which is costly to collect, motivating the use of global datasets in data-scarce regions. A key challenge is understanding how the quantity, quality, and proximity of the training data to the target region influences model performance. We evaluate this in Nigeria, using 1,827 manually labelled samples covering the whole country, and subsets of the Geowiki dataset: Nigeria-only, regional (Nigeria and neighbouring countries), and global. We extract pixel-wise multi-source time series arrays from Sentinel-1, Sentinel-2, ERA5 climate, and a digital elevation model using Google Earth Engine, comparing Random Forests with LSTMs, including a lightweight multi-headed LSTM variant. Results show local data significantly boosts performance, with accuracy gains up to 0.246 (RF) and 0.178 (LSTM). Nigeria-only or regional data outperformed global data despite the lower amount of labels, with the exception of the multi-headed LSTM, which benefited from global data when local samples were absent. Sentinel-1, climate, and topographic data are critical data sources, with their removal reducing F1-score by up to 0.593. Addressing class imbalance also improved LSTM accuracy by up to 0.071. Our top-performing model (Nigeria-only LSTM) achieved an F1-score of 0.814 and accuracy of 0.842, matching the best global land cover product while offering stronger recall, critical for food security. We release code, data, maps, and an interactive web app to support future work.