Alberto Cazzaniga

Luis Palacios, Lorenzo Basile, Diego Doimo et al.

Visual instruction tuning effectively adapts a pre-trained Large Language Model (LLM) to process image information alongside text. Yet, it remains unclear how visual features are embedded into the layer-wise hierarchy of abstractions of the LLM backbone. Across a diverse set of vision-language architectures, we show that instruction tuning primarily serves as a bridge, embedding visual features directly into the intermediate semantic layers of the LLM, bypassing the early layers devoted to unimodal processing. With probing analyses and causal interventions, we show that these intermediate layers are the semantic core of vision-language processing and play a critical role in the performance on a broad set of multimodal benchmarks. In addition, by comparing the geometry of semantically equivalent visual and textual representations, we find that fine-tuning extends and strengthens the existing abstraction phase, aligning visual features with pre-existing textual ones. Finally, we confirm the functional role of this localized alignment by restricting fine-tuning to intermediate layers alone: this strategy preserves the performance of full fine-tuning on vision-centric benchmarks while reducing training time. Our results suggest that multimodal integration is a localized phenomenon driven by the repurposing of the internal abstraction engine of the LLM.

Lucrezia Valeriani, Diego Doimo, Francesca Cuturello et al.

Large transformers are powerful architectures used for self-supervised data analysis across various data types, including protein sequences, images, and text. In these models, the semantic structure of the dataset emerges from a sequence of transformations between one representation and the next. We characterize the geometric and statistical properties of these representations and how they change as we move through the layers. By analyzing the intrinsic dimension (ID) and neighbor composition, we find that the representations evolve similarly in transformers trained on protein language tasks and image reconstruction tasks. In the first layers, the data manifold expands, becoming high-dimensional, and then contracts significantly in the intermediate layers. In the last part of the model, the ID remains approximately constant or forms a second shallow peak. We show that the semantic information of the dataset is better expressed at the end of the first peak, and this phenomenon can be observed across many models trained on diverse datasets. Based on our findings, we point out an explicit strategy to identify, without supervision, the layers that maximize semantic content: representations at intermediate layers corresponding to a relative minimum of the ID profile are more suitable for downstream learning tasks.

Diego Doimo, Alessandro Serra, Alessio Ansuini et al.

In-context learning (ICL) and supervised fine-tuning (SFT) are two common strategies for improving the performance of modern large language models (LLMs) on specific tasks. Despite their different natures, these strategies often lead to comparable performance gains. However, little is known about whether they induce similar representations inside LLMs. We approach this problem by analyzing the probability landscape of their hidden representations in the two cases. More specifically, we compare how LLMs solve the same question-answering task, finding that ICL and SFT create very different internal structures, in both cases undergoing a sharp transition in the middle of the network. In the first half of the network, ICL shapes interpretable representations hierarchically organized according to their semantic content. In contrast, the probability landscape obtained with SFT is fuzzier and semantically mixed. In the second half of the model, the fine-tuned representations develop probability modes that better encode the identity of answers, while the landscape of ICL representations is characterized by less defined peaks. Our approach reveals the diverse computational strategies developed inside LLMs to solve the same task across different conditions, allowing us to make a step towards designing optimal methods to extract information from language models.

Francesco Ortu, Zhijing Jin, Diego Doimo et al.

Interpretability research aims to bridge the gap between empirical success and our scientific understanding of the inner workings of large language models (LLMs). However, most existing research focuses on analyzing a single mechanism, such as how models copy or recall factual knowledge. In this work, we propose a formulation of competition of mechanisms, which focuses on the interplay of multiple mechanisms instead of individual mechanisms and traces how one of them becomes dominant in the final prediction. We uncover how and where mechanisms compete within LLMs using two interpretability methods: logit inspection and attention modification. Our findings show traces of the mechanisms and their competition across various model components and reveal attention positions that effectively control the strength of certain mechanisms. Code: https://github.com/francescortu/comp-mech. Data: https://huggingface.co/datasets/francescortu/comp-mech.

Karthik Viswanathan, Yuri Gardinazzi, Giada Panerai et al.

We investigate the relationship between the geometry of token embeddings and their role in the next token prediction within transformer models. An important aspect of this connection uses the notion of empirical measure, which encodes the distribution of token point clouds across transformer layers and drives the evolution of token representations in the mean-field interacting picture. We use metrics such as intrinsic dimension, neighborhood overlap, and cosine similarity to observationally probe these empirical measures across layers. To validate our approach, we compare these metrics to a dataset where the tokens are shuffled, which disrupts the syntactic and semantic structure. Our findings reveal a correlation between the geometric properties of token embeddings and the cross-entropy loss of next token predictions, implying that prompts with higher loss values have tokens represented in higher-dimensional spaces.

Yuri Gardinazzi, Karthik Viswanathan, Giada Panerai et al.

Understanding the decision-making processes of large language models is critical given their widespread applications. To achieve this, we aim to connect a formal mathematical framework - zigzag persistence from topological data analysis - with practical and easily applicable algorithms. Zigzag persistence is particularly effective for characterizing data as it dynamically transforms across model layers. Within this framework, we introduce topological descriptors that measure how topological features, $p$-dimensional holes, persist and evolve throughout the layers. Unlike methods that assess each layer individually and then aggregate the results, our approach directly tracks the full evolutionary path of these features. This offers a statistical perspective on how prompts are rearranged and their relative positions changed in the representation space, providing insights into the system's operation as an integrated whole. To demonstrate the expressivity and applicability of our framework, we highlight how sensitive these descriptors are to different models and a variety of datasets. As a showcase application to a downstream task, we use zigzag persistence to establish a criterion for layer pruning, achieving results comparable to state-of-the-art methods while preserving the system-level perspective.

Francesco Ortu, Zhijing Jin, Diego Doimo et al.

Vision-language models (VLMs) increasingly leverage diverse knowledge sources to address complex tasks, often encountering conflicts between their internal parametric knowledge and external information. Knowledge conflicts can result in hallucinations and unreliable responses, but the mechanisms governing such interactions remain unknown. To address this gap, we analyze the mechanisms that VLMs use to resolve cross-modal conflicts by introducing a dataset of multimodal counterfactual queries that deliberately contradict internal commonsense knowledge. We localize with logit inspection a small set of heads that control the conflict. Moreover, by modifying these heads, we can steer the model towards its internal knowledge or the visual inputs. Finally, we show that attention from such heads pinpoints localized image regions driving visual overrides, outperforming gradient-based attribution in precision.

Alessandro Serra, Francesco Ortu, Emanuele Panizon et al.

Recent advances in multimodal training have significantly improved the integration of image understanding and generation within a unified model. This study investigates how vision-language models (VLMs) handle image-understanding tasks, focusing on how visual information is processed and transferred to the textual domain. We compare native multimodal VLMs, models trained from scratch on multimodal data to generate both text and images, and non-native multimodal VLMs, models adapted from pre-trained large language models or capable of generating only text, highlighting key differences in information flow. We find that in native multimodal VLMs, image and text embeddings are more separated within the residual stream. Moreover, VLMs differ in how visual information reaches text: non-native multimodal VLMs exhibit a distributed communication pattern, where information is exchanged through multiple image tokens, whereas models trained natively for joint image and text generation tend to rely on a single post-image token that acts as a narrow gate for visual information. We show that ablating this single token significantly deteriorates image-understanding performance, whereas targeted, token-level interventions reliably steer image semantics and downstream text with fine-grained control.

Neemesh Yadav, Francesco Ortu, Jiarui Liu et al.

Large Language Models (LLMs) are trained to refuse to respond to harmful content. However, systematic analyses of whether this behavior is truly a reflection of its safety policies or an indication of political censorship, that is practiced globally by countries, is lacking. Differentiating between safety influenced refusals or politically motivated censorship is hard and unclear. For this purpose we introduce PSP, a dataset built specifically to probe the refusal behaviors in LLMs from an explicitly political context. PSP is built by formatting existing censored content from two data sources, openly available on the internet: sensitive prompts in China generalized to multiple countries, and tweets that have been censored in various countries. We study: 1) impact of political sensitivity in seven LLMs through data-driven (making PSP implicit) and representation-level approaches (erasing the concept of politics); and, 2) vulnerability of models on PSP through prompt injection attacks (PIAs). Associating censorship with refusals on content with masked implicit intent, we find that most LLMs perform some form of censorship. We conclude with summarizing major attributes that can cause a shift in refusal distributions across models and contexts of different countries.

Nikola L. Kolev, Tommaso Rodani, Neil J. Curson et al.

Scanning tunnelling microscopy (STM) enables atomic-resolution imaging and atom manipulation, but its utility is often limited by tip degradation and slow serial data acquisition. Fabrication adds another layer of complexity since the tip is often subjected to large voltages, which may alter the shape of its apex, requiring it to be conditioned. Here, we propose a machine learning (ML) approach for image repair and super-resolution to alleviate both challenges. Using a dataset of only 36 pristine experimental images of Si(001):H, we demonstrate that a physics-informed synthetic data generation pipeline can be used to train several state-of-the-art flow-matching and diffusion models. Quantitative evaluation with metrics such as the CLIP Maximum Mean Discrepancy (CMMD) score and structural similarity demonstrates that our models are able to effectively restore images and offer a two- to fourfold reduction in image acquisition time by accurately reconstructing images from sparsely sampled data. Our framework has the potential to significantly increase STM experimental throughput by offering a route to reducing the frequency of tip-conditioning procedures and to enhancing frame rates in existing high-speed STM systems.

Lorenzo Basile, Valentino Maiorca, Diego Doimo et al.

Language and vision-language models have shown impressive performance across a wide range of tasks, but their internal mechanisms remain only partly understood. In this work, we study how individual attention heads in text-generative models specialize in specific semantic or visual attributes. Building on an established interpretability method, we reinterpret the practice of probing intermediate activations with the final decoding layer through the lens of signal processing. This lets us analyze multiple samples in a principled way and rank attention heads based on their relevance to target concepts. Our results show consistent patterns of specialization at the head level across both unimodal and multimodal transformers. Remarkably, we find that editing as few as 1% of the heads, selected using our method, can reliably suppress or enhance targeted concepts in the model output. We validate our approach on language tasks such as question answering and toxicity mitigation, as well as vision-language tasks including image classification and captioning. Our findings highlight an interpretable and controllable structure within attention layers, offering simple tools for understanding and editing large-scale generative models.

Niccolò Tosato, Lorenzo Basile, Emanuele Ballarin et al.

The Backpropagation algorithm has often been criticised for its lack of biological realism. In an attempt to find a more biologically plausible alternative, the recently introduced Forward-Forward algorithm replaces the forward and backward passes of Backpropagation with two forward passes. In this work, we show that the internal representations obtained by the Forward-Forward algorithm can organise into category-specific ensembles exhibiting high sparsity -- composed of a low number of active units. This situation is reminiscent of what has been observed in cortical sensory areas, where neuronal ensembles are suggested to serve as the functional building blocks for perception and action. Interestingly, while this sparse pattern does not typically arise in models trained with standard Backpropagation, it can emerge in networks trained with Backpropagation on the same objective proposed for the Forward-Forward algorithm.