Ila Fiete

LG
h-index36
25papers
234citations
Novelty59%
AI Score57

25 Papers

BMJul 2, 2023Code
Improving Protein Optimization with Smoothed Fitness Landscapes

Andrew Kirjner, Jason Yim, Raman Samusevich et al.

The ability to engineer novel proteins with higher fitness for a desired property would be revolutionary for biotechnology and medicine. Modeling the combinatorially large space of sequences is infeasible; prior methods often constrain optimization to a small mutational radius, but this drastically limits the design space. Instead of heuristics, we propose smoothing the fitness landscape to facilitate protein optimization. First, we formulate protein fitness as a graph signal then use Tikunov regularization to smooth the fitness landscape. We find optimizing in this smoothed landscape leads to improved performance across multiple methods in the GFP and AAV benchmarks. Second, we achieve state-of-the-art results utilizing discrete energy-based models and MCMC in the smoothed landscape. Our method, called Gibbs sampling with Graph-based Smoothing (GGS), demonstrates a unique ability to achieve 2.5 fold fitness improvement (with in-silico evaluation) over its training set. GGS demonstrates potential to optimize proteins in the limited data regime. Code: https://github.com/kirjner/GGS

AIJul 11, 2023
Grid Cell-Inspired Fragmentation and Recall for Efficient Map Building

Jaedong Hwang, Zhang-Wei Hong, Eric Chen et al. · mit

Animals and robots navigate through environments by building and refining maps of space. These maps enable functions including navigation back to home, planning, search and foraging. Here, we use observations from neuroscience, specifically the observed fragmentation of grid cell map in compartmentalized spaces, to propose and apply the concept of Fragmentation-and-Recall (FARMap) in the mapping of large spaces. Agents solve the mapping problem by building local maps via a surprisal-based clustering of space, which they use to set subgoals for spatial exploration. Agents build and use a local map to predict their observations; high surprisal leads to a "fragmentation event" that truncates the local map. At these events, the recent local map is placed into long-term memory (LTM) and a different local map is initialized. If observations at a fracture point match observations in one of the stored local maps, that map is recalled (and thus reused) from LTM. The fragmentation points induce a natural online clustering of the larger space, forming a set of intrinsic potential subgoals that are stored in LTM as a topological graph. Agents choose their next subgoal from the set of near and far potential subgoals from within the current local map or LTM, respectively. Thus, local maps guide exploration locally, while LTM promotes global exploration. We demonstrate that FARMap replicates the fragmentation points observed in animal studies. We evaluate FARMap on complex procedurally-generated spatial environments and realistic simulations to demonstrate that this mapping strategy much more rapidly covers the environment (number of agent steps and wall clock time) and is more efficient in active memory usage, without loss of performance. https://jd730.github.io/projects/FARMap/

NCJun 16, 2023
Beyond Geometry: Comparing the Temporal Structure of Computation in Neural Circuits with Dynamical Similarity Analysis

Mitchell Ostrow, Adam Eisen, Leo Kozachkov et al.

How can we tell whether two neural networks utilize the same internal processes for a particular computation? This question is pertinent for multiple subfields of neuroscience and machine learning, including neuroAI, mechanistic interpretability, and brain-machine interfaces. Standard approaches for comparing neural networks focus on the spatial geometry of latent states. Yet in recurrent networks, computations are implemented at the level of dynamics, and two networks performing the same computation with equivalent dynamics need not exhibit the same geometry. To bridge this gap, we introduce a novel similarity metric that compares two systems at the level of their dynamics, called Dynamical Similarity Analysis (DSA). Our method incorporates two components: Using recent advances in data-driven dynamical systems theory, we learn a high-dimensional linear system that accurately captures core features of the original nonlinear dynamics. Next, we compare different systems passed through this embedding using a novel extension of Procrustes Analysis that accounts for how vector fields change under orthogonal transformation. In four case studies, we demonstrate that our method disentangles conjugate and non-conjugate recurrent neural networks (RNNs), while geometric methods fall short. We additionally show that our method can distinguish learning rules in an unsupervised manner. Our method opens the door to comparative analyses of the essential temporal structure of computation in neural circuits.

AIAug 23, 2024
How Diffusion Models Learn to Factorize and Compose

Qiyao Liang, Ziming Liu, Mitchell Ostrow et al.

Diffusion models are capable of generating photo-realistic images that combine elements which likely do not appear together in the training set, demonstrating the ability to \textit{compositionally generalize}. Nonetheless, the precise mechanism of compositionality and how it is acquired through training remains elusive. Inspired by cognitive neuroscientific approaches, we consider a highly reduced setting to examine whether and when diffusion models learn semantically meaningful and factorized representations of composable features. We performed extensive controlled experiments on conditional Denoising Diffusion Probabilistic Models (DDPMs) trained to generate various forms of 2D Gaussian bump images. We found that the models learn factorized but not fully continuous manifold representations for encoding continuous features of variation underlying the data. With such representations, models demonstrate superior feature compositionality but limited ability to interpolate over unseen values of a given feature. Our experimental results further demonstrate that diffusion models can attain compositionality with few compositional examples, suggesting a more efficient way to train DDPMs. Finally, we connect manifold formation in diffusion models to percolation theory in physics, offering insight into the sudden onset of factorized representation learning. Our thorough toy experiments thus contribute a deeper understanding of how diffusion models capture compositional structure in data.

LGSep 9, 2024
Breaking Neural Network Scaling Laws with Modularity

Akhilan Boopathy, Sunshine Jiang, William Yue et al.

Modular neural networks outperform nonmodular neural networks on tasks ranging from visual question answering to robotics. These performance improvements are thought to be due to modular networks' superior ability to model the compositional and combinatorial structure of real-world problems. However, a theoretical explanation of how modularity improves generalizability, and how to leverage task modularity while training networks remains elusive. Using recent theoretical progress in explaining neural network generalization, we investigate how the amount of training data required to generalize on a task varies with the intrinsic dimensionality of a task's input. We show theoretically that when applied to modularly structured tasks, while nonmodular networks require an exponential number of samples with task dimensionality, modular networks' sample complexity is independent of task dimensionality: modular networks can generalize in high dimensions. We then develop a novel learning rule for modular networks to exploit this advantage and empirically show the improved generalization of the rule, both in- and out-of-distribution, on high-dimensional, modular tasks.

AIOct 26, 2023
Neuro-Inspired Fragmentation and Recall to Overcome Catastrophic Forgetting in Curiosity

Jaedong Hwang, Zhang-Wei Hong, Eric Chen et al.

Deep reinforcement learning methods exhibit impressive performance on a range of tasks but still struggle on hard exploration tasks in large environments with sparse rewards. To address this, intrinsic rewards can be generated using forward model prediction errors that decrease as the environment becomes known, and incentivize an agent to explore novel states. While prediction-based intrinsic rewards can help agents solve hard exploration tasks, they can suffer from catastrophic forgetting and actually increase at visited states. We first examine the conditions and causes of catastrophic forgetting in grid world environments. We then propose a new method FARCuriosity, inspired by how humans and animals learn. The method depends on fragmentation and recall: an agent fragments an environment based on surprisal, and uses different local curiosity modules (prediction-based intrinsic reward functions) for each fragment so that modules are not trained on the entire environment. At each fragmentation event, the agent stores the current module in long-term memory (LTM) and either initializes a new module or recalls a previously stored module based on its match with the current state. With fragmentation and recall, FARCuriosity achieves less forgetting and better overall performance in games with varied and heterogeneous environments in the Atari benchmark suite of tasks. Thus, this work highlights the problem of catastrophic forgetting in prediction-based curiosity methods and proposes a solution.

LGSep 9, 2024
Unified Neural Network Scaling Laws and Scale-time Equivalence

Akhilan Boopathy, Ila Fiete

As neural networks continue to grow in size but datasets might not, it is vital to understand how much performance improvement can be expected: is it more important to scale network size or data volume? Thus, neural network scaling laws, which characterize how test error varies with network size and data volume, have become increasingly important. However, existing scaling laws are often applicable only in limited regimes and often do not incorporate or predict well-known phenomena such as double descent. Here, we present a novel theoretical characterization of how three factors -- model size, training time, and data volume -- interact to determine the performance of deep neural networks. We first establish a theoretical and empirical equivalence between scaling the size of a neural network and increasing its training time proportionally. Scale-time equivalence challenges the current practice, wherein large models are trained for small durations, and suggests that smaller models trained over extended periods could match their efficacy. It also leads to a novel method for predicting the performance of large-scale networks from small-scale networks trained for extended epochs, and vice versa. We next combine scale-time equivalence with a linear model analysis of double descent to obtain a unified theoretical scaling law, which we confirm with experiments across vision benchmarks and network architectures. These laws explain several previously unexplained phenomena: reduced data requirements for generalization in larger models, heightened sensitivity to label noise in overparameterized models, and instances where increasing model scale does not necessarily enhance performance. Our findings hold significant implications for the practical deployment of neural networks, offering a more accessible and efficient path to training and fine-tuning large models.

LGJan 30
The Blessing of Dimensionality in LLM Fine-tuning: A Variance-Curvature Perspective

Qiyao Liang, Jinyeop Song, Yizhou Liu et al.

Weight-perturbation evolution strategies (ES) can fine-tune billion-parameter language models with surprisingly small populations (e.g., $N\!\approx\!30$), contradicting classical zeroth-order curse-of-dimensionality intuition. We also observe a second seemingly separate phenomenon: under fixed hyperparameters, the stochastic fine-tuning reward often rises, peaks, and then degrades in both ES and GRPO. We argue that both effects reflect a shared geometric property of fine-tuning landscapes: they are low-dimensional in curvature. A small set of high-curvature dimensions dominates improvement, producing (i) heterogeneous time scales that yield rise-then-decay under fixed stochasticity, as captured by a minimal quadratic stochastic-ascent model, and (ii) degenerate improving updates, where many random perturbations share similar components along these directions. Using ES as a geometric probe on fine-tuning reward landscapes of GSM8K, ARC-C, and WinoGrande across Qwen2.5-Instruct models (0.5B--7B), we show that reward-improving perturbations remain empirically accessible with small populations across scales. Together, these results reconcile ES scalability with non-monotonic training dynamics and suggest that high-dimensional fine-tuning may admit a broader class of viable optimization methods than worst-case theory implies.

NCOct 29, 2025
InputDSA: Demixing then Comparing Recurrent and Externally Driven Dynamics

Ann Huang, Mitchell Ostrow, Satpreet H. Singh et al.

In control problems and basic scientific modeling, it is important to compare observations with dynamical simulations. For example, comparing two neural systems can shed light on the nature of emergent computations in the brain and deep neural networks. Recently, Ostrow et al. (2023) introduced Dynamical Similarity Analysis (DSA), a method to measure the similarity of two systems based on their recurrent dynamics rather than geometry or topology. However, DSA does not consider how inputs affect the dynamics, meaning that two similar systems, if driven differently, may be classified as different. Because real-world dynamical systems are rarely autonomous, it is important to account for the effects of input drive. To this end, we introduce a novel metric for comparing both intrinsic (recurrent) and input-driven dynamics, called InputDSA (iDSA). InputDSA extends the DSA framework by estimating and comparing both input and intrinsic dynamic operators using a variant of Dynamic Mode Decomposition with control (DMDc) based on subspace identification. We demonstrate that InputDSA can successfully compare partially observed, input-driven systems from noisy data. We show that when the true inputs are unknown, surrogate inputs can be substituted without a major deterioration in similarity estimates. We apply InputDSA on Recurrent Neural Networks (RNNs) trained with Deep Reinforcement Learning, identifying that high-performing networks are dynamically similar to one another, while low-performing networks are more diverse. Lastly, we apply InputDSA to neural data recorded from rats performing a cognitive task, demonstrating that it identifies a transition from input-driven evidence accumulation to intrinsically-driven decision-making. Our work demonstrates that InputDSA is a robust and efficient method for comparing intrinsic dynamics and the effect of external input on dynamical systems.

68.5AIMay 7
Attractor Geometry of Transformer Memory: From Conflict Arbitration to Confident Hallucination

Qiyao Liang, Risto Miikkulainen, Ila Fiete

Language models draw on two knowledge sources: facts baked into weights (parametric memory, PM) and information in context (working memory, WM). We study two mechanistically distinct failure modes--conflict, when PM and WM disagree and interfere; and hallucination, when the queried fact was never learned. Both produce confident output regardless, making output-based monitoring blind by design. We show both failures share a unified geometric account. In the hidden-state space of autoregressive generation, learned facts form attractor basins. Conflict is basin competition: WM disrupts convergence to the correct basin without raising output entropy. Hallucination is basin absence: the hidden state drifts freely when no memorized basin exists. The frozen LM head, designed for next-token prediction, cannot distinguish these cases and fires confidently either way. We verify this account in a controlled synthetic task--entity identifiers mapped to unique codes with PM installed via LoRA adapters--where ground truth is exact and component roles can be causally isolated through targeted adapter placement. Geometric margin--the hidden state's distance to the nearest memorized basin--reads this geometry directly and separates correct recall from hallucination far more cleanly than output entropy, with zero false refusals where entropy-based detection cannot avoid rejecting the vast majority of correct outputs. The separation holds on natural-language factual queries from the pretrained model with no adaptation, confirming attractor geometry is structural rather than a fine-tuning artifact. The fraction of confident hallucinations follows a scaling law $C = \exp(-c/\barΔ)$, growing with scale even as overall error rates fall. Hidden states reliably encode epistemic state; the frozen output head systematically erases it--and this erasure worsens with scale.

NCJan 6, 2025
Key-value memory in the brain

Samuel J. Gershman, Ila Fiete, Kazuki Irie

Classical models of memory in psychology and neuroscience rely on similarity-based retrieval of stored patterns, where similarity is a function of retrieval cues and the stored patterns. While parsimonious, these models do not allow distinct representations for storage and retrieval, despite their distinct computational demands. Key-value memory systems, in contrast, distinguish representations used for storage (values) and those used for retrieval (keys). This allows key-value memory systems to optimize simultaneously for fidelity in storage and discriminability in retrieval. We review the computational foundations of key-value memory, its role in modern machine learning systems, related ideas from psychology and neuroscience, applications to a number of empirical puzzles, and possible biological implementations.

CLJul 7, 2025
Learn Globally, Speak Locally: Bridging the Gaps in Multilingual Reasoning

Jaedong Hwang, Kumar Tanmay, Seok-Jin Lee et al.

Large Language Models (LLMs) have achieved strong performance in domains like mathematics, factual question answering, and code generation, yet their ability to reason on these tasks in different languages remains underdeveloped. Especially for low-resource languages such as Swahili or Thai, LLMs can often misinterpret prompts or default to reasoning in English. This implicit bias toward high-resource languages undermines factual accuracy, interpretability, and trust. We propose M2A, a novel method that combines multi-scale multilingual alignment with language-consistency rewards on machine-translated questions, training models to reason directly and accurately in the target language. Furthermore, existing multilingual benchmarks only evaluate on final answers, overlooking whether reasoning occurs in the intended language. To close this gap, we introduce GeoFact-X, a geography-based multilingual factual reasoning benchmark together with reasoning traces in five languages: English, Hindi, Japanese, Swahili, and Thai. Our results show that M2A significantly enhances multilingual reasoning fidelity in both mathematical and factual reasoning tasks, highlighting that reasoning-aware multilingual reinforcement learning is crucial for robust cross-lingual generalization. https://jd730.github.io/projects/M2A_GeoFact-X

ROApr 21, 2024
Resampling-free Particle Filters in High-dimensions

Akhilan Boopathy, Aneesh Muppidi, Peggy Yang et al.

State estimation is crucial for the performance and safety of numerous robotic applications. Among the suite of estimation techniques, particle filters have been identified as a powerful solution due to their non-parametric nature. Yet, in high-dimensional state spaces, these filters face challenges such as 'particle deprivation' which hinders accurate representation of the true posterior distribution. This paper introduces a novel resampling-free particle filter designed to mitigate particle deprivation by forgoing the traditional resampling step. This ensures a broader and more diverse particle set, especially vital in high-dimensional scenarios. Theoretically, our proposed filter is shown to offer a near-accurate representation of the desired posterior distribution in high-dimensional contexts. Empirically, the effectiveness of our approach is underscored through a high-dimensional synthetic state estimation task and a 6D pose estimation derived from videos. We posit that as robotic systems evolve with greater degrees of freedom, particle filters tailored for high-dimensional state spaces will be indispensable.

LGJan 30, 2025
Compositional Generalization via Forced Rendering of Disentangled Latents

Qiyao Liang, Daoyuan Qian, Liu Ziyin et al.

Composition-the ability to generate myriad variations from finite means-is believed to underlie powerful generalization. However, compositional generalization remains a key challenge for deep learning. A widely held assumption is that learning disentangled (factorized) representations naturally supports this kind of extrapolation. Yet, empirical results are mixed, with many generative models failing to recognize and compose factors to generate out-of-distribution (OOD) samples. In this work, we investigate a controlled 2D Gaussian "bump" generation task with fully disentangled (x,y) inputs, demonstrating that standard generative architectures still fail in OOD regions when training with partial data, by re-entangling latent representations in subsequent layers. By examining the model's learned kernels and manifold geometry, we show that this failure reflects a "memorization" strategy for generation via data superposition rather than via composition of the true factorized features. We show that when models are forced-through architectural modifications with regularization or curated training data-to render the disentangled latents into the full-dimensional representational (pixel) space, they can be highly data-efficient and effective at composing in OOD regions. These findings underscore that disentangled latents in an abstract representation are insufficient and show that if models can represent disentangled factors directly in the output representational space, it can achieve robust compositional generalization.

LGFeb 5, 2024
Do Diffusion Models Learn Semantically Meaningful and Efficient Representations?

Qiyao Liang, Ziming Liu, Ila Fiete

Diffusion models are capable of impressive feats of image generation with uncommon juxtapositions such as astronauts riding horses on the moon with properly placed shadows. These outputs indicate the ability to perform compositional generalization, but how do the models do so? We perform controlled experiments on conditional DDPMs learning to generate 2D spherical Gaussian bumps centered at specified $x$- and $y$-positions. Our results show that the emergence of semantically meaningful latent representations is key to achieving high performance. En route to successful performance over learning, the model traverses three distinct phases of latent representations: (phase A) no latent structure, (phase B) a 2D manifold of disordered states, and (phase C) a 2D ordered manifold. Corresponding to each of these phases, we identify qualitatively different generation behaviors: 1) multiple bumps are generated, 2) one bump is generated but at inaccurate $x$ and $y$ locations, 3) a bump is generated at the correct $x$ and y location. Furthermore, we show that even under imbalanced datasets where features ($x$- versus $y$-positions) are represented with skewed frequencies, the learning process for $x$ and $y$ is coupled rather than factorized, demonstrating that simple vanilla-flavored diffusion models cannot learn efficient representations in which localization in $x$ and $y$ are factorized into separate 1D tasks. These findings suggest the need for future work to find inductive biases that will push generative models to discover and exploit factorizable independent structures in their inputs, which will be required to vault these models into more data-efficient regimes.

BIO-PHDec 5, 2025
Modular connectivity in neural networks emerges from Poisson noise-motivated regularisation, and promotes robustness and compositional generalisation

Daoyuan Qian, Qiyao Liang, Ila Fiete

Circuits in the brain commonly exhibit modular architectures that factorise complex tasks, resulting in the ability to compositionally generalise and reduce catastrophic forgetting. In contrast, artificial neural networks (ANNs) appear to mix all processing, because modular solutions are difficult to find as they are vanishing subspaces in the space of possible solutions. Here, we draw inspiration from fault-tolerant computation and the Poisson-like firing of real neurons to show that activity-dependent neural noise, combined with nonlinear neural responses, drives the emergence of solutions that reflect an accurate understanding of modular tasks, corresponding to acquisition of a correct world model. We find that noise-driven modularisation can be recapitulated by a deterministic regulariser that multiplicatively combines weights and activations, revealing rich phenomenology not captured in linear networks or by standard regularisation methods. Though the emergence of modular structure requires sufficiently many training samples (exponential in the number of modular task dimensions), we show that pre-modularised ANNs exhibit superior noise-robustness and the ability to generalise and extrapolate well beyond training data, compared to ANNs without such inductive biases. Together, our work demonstrates a regulariser and architectures that could encourage modularity emergence to yield functional benefits.

AINov 28, 2025
Fast dynamical similarity analysis

Arman Behrad, Mitchell Ostrow, Mohammad Taha Fakharian et al.

To understand how neural systems process information, it is often essential to compare one circuit with another, one brain with another, or data with a model. Traditional similarity measures ignore the dynamical processes underlying neural representations. Dynamical similarity methods offer a framework to compare the temporal structure of dynamical systems by embedding their (possibly) nonlinear dynamics into a globally linear space and there computing conjugacy metrics. However, identifying the best embedding and computing these metrics can be computationally slow. Here we introduce fast Dynamical Similarity Analysis (fastDSA), which is computationally far more efficient than previous methods while maintaining their accuracy and robustness. FastDSA introduces two key components that boost efficiency: (1) automatic selection of the effective model order of the Hankel (delay) embedding from the data via a data-driven singular-value threshold that identifies the informative subspace and discards noise to lower computational cost without sacrificing signal, and (2) a novel optimization procedure and objective, which replaces the slow exact orthogonality constraint in finding a minimal distance between dynamics matrices with a lightweight process to keep the search close to the space of orthogonal transformations. We demonstrate that fastDSA is at least an order of magnitude faster than the previous methods. Furthermore, we demonstrate that fastDSA has the properties of its ancestor, including its invariances and sensitivities to system dynamics. FastDSA, therefore, provides a computationally efficient and accurate method for dynamical similarity analysis.

LGOct 30, 2024
Permutation Invariant Learning with High-Dimensional Particle Filters

Akhilan Boopathy, Aneesh Muppidi, Peggy Yang et al.

Sequential learning in deep models often suffers from challenges such as catastrophic forgetting and loss of plasticity, largely due to the permutation dependence of gradient-based algorithms, where the order of training data impacts the learning outcome. In this work, we introduce a novel permutation-invariant learning framework based on high-dimensional particle filters. We theoretically demonstrate that particle filters are invariant to the sequential ordering of training minibatches or tasks, offering a principled solution to mitigate catastrophic forgetting and loss-of-plasticity. We develop an efficient particle filter for optimizing high-dimensional models, combining the strengths of Bayesian methods with gradient-based optimization. Through extensive experiments on continual supervised and reinforcement learning benchmarks, including SplitMNIST, SplitCIFAR100, and ProcGen, we empirically show that our method consistently improves performance, while reducing variance compared to standard baselines.

CVOct 28, 2024
Large Pre-Training Datasets Don't Always Guarantee Robustness after Fine-Tuning

Jaedong Hwang, Brian Cheung, Zhang-Wei Hong et al.

Large-scale pretrained models are widely leveraged as foundations for learning new specialized tasks via fine-tuning, with the goal of maintaining the general performance of the model while allowing it to gain new skills. A valuable goal for all such models is robustness: the ability to perform well on out-of-distribution (OOD) tasks. We assess whether fine-tuning preserves the overall robustness of the pretrained model, and observed that models pretrained on large datasets exhibited strong catastrophic forgetting and loss of OOD generalization. To systematically assess robustness preservation in fine-tuned models, we propose the Robustness Inheritance Benchmark (ImageNet-RIB). The benchmark, which can be applied to any pretrained model, consists of a set of related but distinct OOD (downstream) tasks and involves fine-tuning on one of the OOD tasks in the set then testing on the rest. We find that though continual learning methods help, fine-tuning reduces robustness across pretrained models. Surprisingly, models pretrained on the largest and most diverse datasets (e.g., LAION-2B) exhibit both larger robustness losses and lower absolute robustness after fine-tuning on small datasets, relative to models pretrained on smaller datasets. These findings suggest that starting with the strongest foundation model is not necessarily the best approach for performance on specialist tasks. https://jd730.github.io/projects/ImageNet-RIB

LGJun 22, 2024
Towards Exact Computation of Inductive Bias

Akhilan Boopathy, William Yue, Jaedong Hwang et al.

Much research in machine learning involves finding appropriate inductive biases (e.g. convolutional neural networks, momentum-based optimizers, transformers) to promote generalization on tasks. However, quantification of the amount of inductive bias associated with these architectures and hyperparameters has been limited. We propose a novel method for efficiently computing the inductive bias required for generalization on a task with a fixed training data budget; formally, this corresponds to the amount of information required to specify well-generalizing models within a specific hypothesis space of models. Our approach involves modeling the loss distribution of random hypotheses drawn from a hypothesis space to estimate the required inductive bias for a task relative to these hypotheses. Unlike prior work, our method provides a direct estimate of inductive bias without using bounds and is applicable to diverse hypothesis spaces. Moreover, we derive approximation error bounds for our estimation approach in terms of the number of sampled hypotheses. Consistent with prior results, our empirical results demonstrate that higher dimensional tasks require greater inductive bias. We show that relative to other expressive model classes, neural networks as a model class encode large amounts of inductive bias. Furthermore, our measure quantifies the relative difference in inductive bias between different neural network architectures. Our proposed inductive bias metric provides an information-theoretic interpretation of the benefits of specific model architectures for certain tasks and provides a quantitative guide to developing tasks requiring greater inductive bias, thereby encouraging the development of more powerful inductive biases.

LGJun 17, 2024
Delay Embedding Theory of Neural Sequence Models

Mitchell Ostrow, Adam Eisen, Ila Fiete

To generate coherent responses, language models infer unobserved meaning from their input text sequence. One potential explanation for this capability arises from theories of delay embeddings in dynamical systems, which prove that unobserved variables can be recovered from the history of only a handful of observed variables. To test whether language models are effectively constructing delay embeddings, we measure the capacities of sequence models to reconstruct unobserved dynamics. We trained 1-layer transformer decoders and state-space sequence models on next-step prediction from noisy, partially-observed time series data. We found that each sequence layer can learn a viable embedding of the underlying system. However, state-space models have a stronger inductive bias than transformers-in particular, they more effectively reconstruct unobserved information at initialization, leading to more parameter-efficient models and lower error on dynamics tasks. Our work thus forges a novel connection between dynamical systems and deep learning sequence models via delay embedding theory.

LGMay 1, 2023
Model-agnostic Measure of Generalization Difficulty

Akhilan Boopathy, Kevin Liu, Jaedong Hwang et al.

The measure of a machine learning algorithm is the difficulty of the tasks it can perform, and sufficiently difficult tasks are critical drivers of strong machine learning models. However, quantifying the generalization difficulty of machine learning benchmarks has remained challenging. We propose what is to our knowledge the first model-agnostic measure of the inherent generalization difficulty of tasks. Our inductive bias complexity measure quantifies the total information required to generalize well on a task minus the information provided by the data. It does so by measuring the fractional volume occupied by hypotheses that generalize on a task given that they fit the training data. It scales exponentially with the intrinsic dimensionality of the space over which the model must generalize but only polynomially in resolution per dimension, showing that tasks which require generalizing over many dimensions are drastically more difficult than tasks involving more detail in fewer dimensions. Our measure can be applied to compute and compare supervised learning, reinforcement learning and meta-learning generalization difficulties against each other. We show that applied empirically, it formally quantifies intuitively expected trends, e.g. that in terms of required inductive bias, MNIST < CIFAR10 < Imagenet and fully observable Markov decision processes (MDPs) < partially observable MDPs. Further, we show that classification of complex images < few-shot meta-learning with simple images. Our measure provides a quantitative metric to guide the construction of more complex tasks requiring greater inductive bias, and thereby encourages the development of more sophisticated architectures and learning algorithms with more powerful generalization capabilities.

LGOct 23, 2021
Map Induction: Compositional spatial submap learning for efficient exploration in novel environments

Sugandha Sharma, Aidan Curtis, Marta Kryven et al.

Humans are expert explorers. Understanding the computational cognitive mechanisms that support this efficiency can advance the study of the human mind and enable more efficient exploration algorithms. We hypothesize that humans explore new environments efficiently by inferring the structure of unobserved spaces using spatial information collected from previously explored spaces. This cognitive process can be modeled computationally using program induction in a Hierarchical Bayesian framework that explicitly reasons about uncertainty with strong spatial priors. Using a new behavioral Map Induction Task, we demonstrate that this computational framework explains human exploration behavior better than non-inductive models and outperforms state-of-the-art planning algorithms when applied to a realistic spatial navigation domain.

LGJun 15, 2021
How to Train Your Wide Neural Network Without Backprop: An Input-Weight Alignment Perspective

Akhilan Boopathy, Ila Fiete

Recent works have examined theoretical and empirical properties of wide neural networks trained in the Neural Tangent Kernel (NTK) regime. Given that biological neural networks are much wider than their artificial counterparts, we consider NTK regime wide neural networks as a possible model of biological neural networks. Leveraging NTK theory, we show theoretically that gradient descent drives layerwise weight updates that are aligned with their input activity correlations weighted by error, and demonstrate empirically that the result also holds in finite-width wide networks. The alignment result allows us to formulate a family of biologically-motivated, backpropagation-free learning rules that are theoretically equivalent to backpropagation in infinite-width networks. We test these learning rules on benchmark problems in feedforward and recurrent neural networks and demonstrate, in wide networks, comparable performance to backpropagation. The proposed rules are particularly effective in low data regimes, which are common in biological learning settings.

NCApr 6, 2017
Associative content-addressable networks with exponentially many robust stable states

Rishidev Chaudhuri, Ila Fiete

The brain must robustly store a large number of memories, corresponding to the many events encountered over a lifetime. However, the number of memory states in existing neural network models either grows weakly with network size or recall fails catastrophically with vanishingly little noise. We construct an associative content-addressable memory with exponentially many stable states and robust error-correction. The network possesses expander graph connectivity on a restricted Boltzmann machine architecture. The expansion property allows simple neural network dynamics to perform at par with modern error-correcting codes. Appropriate networks can be constructed with sparse random connections, glomerular nodes, and associative learning using low dynamic-range weights. Thus, sparse quasi-random structures---characteristic of important error-correcting codes---may provide for high-performance computation in artificial neural networks and the brain.