Taimur Hassan

Muhayyuddin Ahmed, Ahsan Baidar Bakht, Taimur Hassan et al.

Visual perception is an important component for autonomous navigation of unmanned surface vessels (USV), particularly for the tasks related to autonomous inspection and tracking. These tasks involve vision-based navigation techniques to identify the target for navigation. Reduced visibility under extreme weather conditions in marine environments makes it difficult for vision-based approaches to work properly. To overcome these issues, this paper presents an autonomous vision-based navigation framework for tracking target objects in extreme marine conditions. The proposed framework consists of an integrated perception pipeline that uses a generative adversarial network (GAN) to remove noise and highlight the object features before passing them to the object detector (i.e., YOLOv5). The detected visual features are then used by the USV to track the target. The proposed framework has been thoroughly tested in simulation under extremely reduced visibility due to sandstorms and fog. The results are compared with state-of-the-art de-hazing methods across the benchmarked MBZIRC simulation dataset, on which the proposed scheme has outperformed the existing methods across various metrics.

Asim Khan, Taimur Hassan, Muhammad Shafay et al.

Tomatoes are a major crop worldwide, and accurately classifying their maturity is important for many agricultural applications, such as harvesting, grading, and quality control. In this paper, the authors propose a novel method for tomato maturity classification using a convolutional transformer. The convolutional transformer is a hybrid architecture that combines the strengths of convolutional neural networks (CNNs) and transformers. Additionally, this study introduces a new tomato dataset named KUTomaData, explicitly designed to train deep-learning models for tomato segmentation and classification. KUTomaData is a compilation of images sourced from a greenhouse in the UAE, with approximately 700 images available for training and testing. The dataset is prepared under various lighting conditions and viewing perspectives and employs different mobile camera sensors, distinguishing it from existing datasets. The contributions of this paper are threefold:Firstly, the authors propose a novel method for tomato maturity classification using a modular convolutional transformer. Secondly, the authors introduce a new tomato image dataset that contains images of tomatoes at different maturity levels. Lastly, the authors show that the convolutional transformer outperforms state-of-the-art methods for tomato maturity classification. The effectiveness of the proposed framework in handling cluttered and occluded tomato instances was evaluated using two additional public datasets, Laboro Tomato and Rob2Pheno Annotated Tomato, as benchmarks. The evaluation results across these three datasets demonstrate the exceptional performance of our proposed framework, surpassing the state-of-the-art by 58.14%, 65.42%, and 66.39% in terms of mean average precision scores for KUTomaData, Laboro Tomato, and Rob2Pheno Annotated Tomato, respectively.

Hina Raja, Taimur Hassan, Bilal Hassan et al.

This paper provides a systematic survey of retinal diseases that cause visual impairments or blindness, emphasizing the importance of early detection for effective treatment. It covers both clinical and automated approaches for detecting retinal disease, focusing on studies from the past decade. The survey evaluates various algorithms for identifying structural abnormalities and diagnosing retinal diseases, and it identifies future research directions based on a critical analysis of existing literature. This comprehensive study, which reviews both clinical and automated detection methods using different modalities, appears to be unique in its scope. Additionally, the survey serves as a helpful guide for researchers interested in digital retinopathy.

Mohammad Belal, Taimur Hassan, Abdelfatah Hassan et al.

Human activity recognition is a major field of study that employs computer vision, machine vision, and deep learning techniques to categorize human actions. The field of deep learning has made significant progress, with architectures that are extremely effective at capturing human dynamics. This study emphasizes the influence of feature fusion on the accuracy of activity recognition. This technique addresses the limitation of conventional models, which face difficulties in identifying activities because of their limited capacity to understand spatial and temporal features. The technique employs sensory data obtained from four publicly available datasets: HuGaDB, PKU-MMD, LARa, and TUG. The accuracy and F1-score of two deep learning models, specifically a Transformer model and a Parameter-Optimized Graph Convolutional Network (PO-GCN), were evaluated using these datasets. The feature fusion technique integrated the final layer features from both models and inputted them into a classifier. Empirical evidence demonstrates that PO-GCN outperforms standard models in activity recognition. HuGaDB demonstrated a 2.3% improvement in accuracy and a 2.2% increase in F1-score. TUG showed a 5% increase in accuracy and a 0.5% rise in F1-score. On the other hand, LARa and PKU-MMD achieved lower accuracies of 64% and 69% respectively. This indicates that the integration of features enhanced the performance of both the Transformer model and PO-GCN.

Divya Velayudhan, Abdelfatah Ahmed, Mohamad Alansari et al.

Advancements in Computer-Aided Screening (CAS) systems are essential for improving the detection of security threats in X-ray baggage scans. However, current datasets are limited in representing real-world, sophisticated threats and concealment tactics, and existing approaches are constrained by a closed-set paradigm with predefined labels. To address these challenges, we introduce STCray, the first multimodal X-ray baggage security dataset, comprising 46,642 image-caption paired scans across 21 threat categories, generated using an X-ray scanner for airport security. STCray is meticulously developed with our specialized protocol that ensures domain-aware, coherent captions, that lead to the multi-modal instruction following data in X-ray baggage security. This allows us to train a domain-aware visual AI assistant named STING-BEE that supports a range of vision-language tasks, including scene comprehension, referring threat localization, visual grounding, and visual question answering (VQA), establishing novel baselines for multi-modal learning in X-ray baggage security. Further, STING-BEE shows state-of-the-art generalization in cross-domain settings. Code, data, and models are available at https://divs1159.github.io/STING-BEE/.

Ahmad Obeid, Said Boumaraf, Anabia Sohail et al.

Recent years witnessed remarkable progress in computational histopathology, largely fueled by deep learning. This brought the clinical adoption of deep learning-based tools within reach, promising significant benefits to healthcare, offering a valuable second opinion on diagnoses, streamlining complex tasks, and mitigating the risks of inconsistency and bias in clinical decisions. However, a well-known challenge is that deep learning models may contain up to billions of parameters; supervising their training effectively would require vast labeled datasets to achieve reliable generalization and noise resilience. In medical imaging, particularly histopathology, amassing such extensive labeled data collections places additional demands on clinicians and incurs higher costs, which hinders the art's progress. Addressing this challenge, researchers devised various strategies for leveraging deep learning with limited data and annotation availability. In this paper, we present a comprehensive review of deep learning applications in histopathology, with a focus on the challenges posed by data scarcity over the past decade. We systematically categorize and compare various approaches, evaluate their distinct contributions using benchmarking tables, and highlight their respective advantages and limitations. Additionally, we address gaps in existing reviews and identify underexplored research opportunities, underscoring the potential for future advancements in this field.

Mohammad Belal, Taimur Hassan, Abdelfatah Ahmed et al.

Human activity recognition (HAR) is a crucial area of research that involves understanding human movements using computer and machine vision technology. Deep learning has emerged as a powerful tool for this task, with models such as Convolutional Neural Networks (CNNs) and Transformers being employed to capture various aspects of human motion. One of the key contributions of this work is the demonstration of the effectiveness of feature fusion in improving HAR accuracy by capturing spatial and temporal features, which has important implications for the development of more accurate and robust activity recognition systems. The study uses sensory data from HuGaDB, PKU-MMD, LARa, and TUG datasets. Two model, the PO-MS-GCN and a Transformer were trained and evaluated, with PO-MS-GCN outperforming state-of-the-art models. HuGaDB and TUG achieved high accuracies and f1-scores, while LARa and PKU-MMD had lower scores. Feature fusion improved results across datasets.

Mehreen Sirshar, Taimur Hassan, Muhammad Usman Akram et al.

Pulmonary diseases can cause severe respiratory problems, leading to sudden death if not treated timely. Many researchers have utilized deep learning systems to diagnose pulmonary disorders using chest X-rays (CXRs). However, such systems require exhaustive training efforts on large-scale data to effectively diagnose chest abnormalities. Furthermore, procuring such large-scale data is often infeasible and impractical, especially for rare diseases. With the recent advances in incremental learning, researchers have periodically tuned deep neural networks to learn different classification tasks with few training examples. Although, such systems can resist catastrophic forgetting, they treat the knowledge representations independently of each other, and this limits their classification performance. Also, to the best of our knowledge, there is no incremental learning-driven image diagnostic framework that is specifically designed to screen pulmonary disorders from the CXRs. To address this, we present a novel framework that can learn to screen different chest abnormalities incrementally. In addition to this, the proposed framework is penalized through an incremental learning loss function that infers Bayesian theory to recognize structural and semantic inter-dependencies between incrementally learned knowledge representations to diagnose the pulmonary diseases effectively, regardless of the scanner specifications. We tested the proposed framework on five public CXR datasets containing different chest abnormalities, where it outperformed various state-of-the-art system through various metrics.

Taimur Hassan, Samet Akcay, Mohammed Bennamoun et al.

Screening cluttered and occluded contraband items from baggage X-ray scans is a cumbersome task even for the expert security staff. This paper presents a novel strategy that extends a conventional encoder-decoder architecture to perform instance-aware segmentation and extract merged instances of contraband items without using any additional sub-network or an object detector. The encoder-decoder network first performs conventional semantic segmentation and retrieves cluttered baggage items. The model then incrementally evolves during training to recognize individual instances using significantly reduced training batches. To avoid catastrophic forgetting, a novel objective function minimizes the network loss in each iteration by retaining the previously acquired knowledge while learning new class representations and resolving their complex structural inter-dependencies through Bayesian inference. A thorough evaluation of our framework on two publicly available X-ray datasets shows that it outperforms state-of-the-art methods, especially within the challenging cluttered scenarios, while achieving an optimal trade-off between detection accuracy and efficiency.

Muhammed Shafay, Taimur Hassan, Ernesto Damiani et al.

Detection of illegal and threatening items in baggage is one of the utmost security concern nowadays. Even for experienced security personnel, manual detection is a time-consuming and stressful task. Many academics have created automated frameworks for detecting suspicious and contraband data from X-ray scans of luggage. However, to our knowledge, no framework exists that utilizes temporal baggage X-ray imagery to effectively screen highly concealed and occluded objects which are barely visible even to the naked eye. To address this, we present a novel temporal fusion driven multi-scale residual fashioned encoder-decoder that takes series of consecutive scans as input and fuses them to generate distinct feature representations of the suspicious and non-suspicious baggage content, leading towards a more accurate extraction of the contraband data. The proposed methodology has been thoroughly tested using the publicly accessible GDXray dataset, which is the only dataset containing temporally linked grayscale X-ray scans showcasing extremely concealed contraband data. The proposed framework outperforms its competitors on the GDXray dataset on various metrics.

Taimur Hassan, Bilal Hassan, Muhammad Usman Akram et al.

Retinopathy represents a group of retinal diseases that, if not treated timely, can cause severe visual impairments or even blindness. Many researchers have developed autonomous systems to recognize retinopathy via fundus and optical coherence tomography (OCT) imagery. However, most of these frameworks employ conventional transfer learning and fine-tuning approaches, requiring a decent amount of well-annotated training data to produce accurate diagnostic performance. This paper presents a novel incremental cross-domain adaptation instrument that allows any deep classification model to progressively learn abnormal retinal pathologies in OCT and fundus imagery via few-shot training. Furthermore, unlike its competitors, the proposed instrument is driven via a Bayesian multi-objective function that not only enforces the candidate classification network to retain its prior learned knowledge during incremental training but also ensures that the network understands the structural and semantic relationships between previously learned pathologies and newly added disease categories to effectively recognize them at the inference stage. The proposed framework, evaluated on six public datasets acquired with three different scanners to screen thirteen retinal pathologies, outperforms the state-of-the-art competitors by achieving an overall accuracy and F1 score of 0.9826 and 0.9846, respectively.

Bilal Hassan, Taimur Hassan, Ramsha Ahmed et al.

This paper proposes an automated method for the segmentation and extraction of the posterior segment of the human eye, including the vitreous, retina, choroid, and sclera compartments, using multi-vendor optical coherence tomography (OCT) scans. The proposed method works in two phases. First extracts the retinal pigment epithelium (RPE) layer by applying the adaptive thresholding technique to identify the retina-choroid junction. Then, it exploits the structure tensor guided approach to extract the inner limiting membrane (ILM) and the choroidal stroma (CS) layers, locating the vitreous-retina and choroid-sclera junctions in the candidate OCT scan. Furthermore, these three junction boundaries are utilized to conduct posterior eye compartmentalization effectively for both healthy and disease eye OCT scans. The proposed framework is evaluated over 1000 OCT scans, where it obtained the mean intersection over union (IoU) and mean Dice similarity coefficient (DSC) scores of 0.874 and 0.930, respectively.

Taimur Hassan, Samet Akcay, Mohammed Bennamoun et al.

Automated systems designed for screening contraband items from the X-ray imagery are still facing difficulties with high clutter, concealment, and extreme occlusion. In this paper, we addressed this challenge using a novel multi-scale contour instance segmentation framework that effectively identifies the cluttered contraband data within the baggage X-ray scans. Unlike standard models that employ region-based or keypoint-based techniques to generate multiple boxes around objects, we propose to derive proposals according to the hierarchy of the regions defined by the contours. The proposed framework is rigorously validated on three public datasets, dubbed GDXray, SIXray, and OPIXray, where it outperforms the state-of-the-art methods by achieving the mean average precision score of 0.9779, 0.9614, and 0.8396, respectively. Furthermore, to the best of our knowledge, this is the first contour instance segmentation framework that leverages multi-scale information to recognize cluttered and concealed contraband data from the colored and grayscale security X-ray imagery.

Taimur Hassan, Samet Akcay, Mohammed Bennamoun et al.

Identifying potential threats concealed within the baggage is of prime concern for the security staff. Many researchers have developed frameworks that can detect baggage threats from X-ray scans. However, to the best of our knowledge, all of these frameworks require extensive training on large-scale and well-annotated datasets, which are hard to procure in the real world. This paper presents a novel unsupervised anomaly instance segmentation framework that recognizes baggage threats, in X-ray scans, as anomalies without requiring any ground truth labels. Furthermore, thanks to its stylization capacity, the framework is trained only once, and at the inference stage, it detects and extracts contraband items regardless of their scanner specifications. Our one-staged approach initially learns to reconstruct normal baggage content via an encoder-decoder network utilizing a proposed stylization loss function. The model subsequently identifies the abnormal regions by analyzing the disparities within the original and the reconstructed scans. The anomalous regions are then clustered and post-processed to fit a bounding box for their localization. In addition, an optional classifier can also be appended with the proposed framework to recognize the categories of these extracted anomalies. A thorough evaluation of the proposed system on four public baggage X-ray datasets, without any re-training, demonstrates that it achieves competitive performance as compared to the conventional fully supervised methods (i.e., the mean average precision score of 0.7941 on SIXray, 0.8591 on GDXray, 0.7483 on OPIXray, and 0.5439 on COMPASS-XP dataset) while outperforming state-of-the-art semi-supervised and unsupervised baggage threat detection frameworks by 67.37%, 32.32%, 47.19%, and 45.81% in terms of F1 score across SIXray, GDXray, OPIXray, and COMPASS-XP datasets, respectively.

Taimur Hassan, Bilal Hassan, Ayman El-Baz et al.

Prostate cancer (PCa) is the second deadliest form of cancer in males, and it can be clinically graded by examining the structural representations of Gleason tissues. This paper proposes \RV{a new method} for segmenting the Gleason tissues \RV{(patch-wise) in order to grade PCa from the whole slide images (WSI).} Also, the proposed approach encompasses two main contributions: 1) A synergy of hybrid dilation factors and hierarchical decomposition of latent space representation for effective Gleason tissues extraction, and 2) A three-tiered loss function which can penalize different semantic segmentation models for accurately extracting the highly correlated patterns. In addition to this, the proposed framework has been extensively evaluated on a large-scale PCa dataset containing 10,516 whole slide scans (with around 71.7M patches), where it outperforms state-of-the-art schemes by 3.22% (in terms of mean intersection-over-union) for extracting the Gleason tissues and 6.91% (in terms of F1 score) for grading the progression of PCa.

Hina Raja, Taimur Hassan, Muhammad Usman Akram et al.

Objective: Glaucoma is the second leading cause of blindness worldwide. Glaucomatous progression can be easily monitored by analyzing the degeneration of retinal ganglion cells (RGCs). Many researchers have screened glaucoma by measuring cup-to-disc ratios from fundus and optical coherence tomography scans. However, this paper presents a novel strategy that pays attention to the RGC atrophy for screening glaucomatous pathologies and grading their severity. Methods: The proposed framework encompasses a hybrid convolutional network that extracts the retinal nerve fiber layer, ganglion cell with the inner plexiform layer and ganglion cell complex regions, allowing thus a quantitative screening of glaucomatous subjects. Furthermore, the severity of glaucoma in screened cases is objectively graded by analyzing the thickness of these regions. Results: The proposed framework is rigorously tested on publicly available Armed Forces Institute of Ophthalmology (AFIO) dataset, where it achieved the F1 score of 0.9577 for diagnosing glaucoma, a mean dice coefficient score of 0.8697 for extracting the RGC regions and an accuracy of 0.9117 for grading glaucomatous progression. Furthermore, the performance of the proposed framework is clinically verified with the markings of four expert ophthalmologists, achieving a statistically significant Pearson correlation coefficient of 0.9236. Conclusion: An automated assessment of RGC degeneration yields better glaucomatous screening and grading as compared to the state-of-the-art solutions. Significance: An RGC-aware system not only screens glaucoma but can also grade its severity and here we present an end-to-end solution that is thoroughly evaluated on a standardized dataset and is clinically validated for analyzing glaucomatous pathologies.

Taimur Hassan, Samet Akcay, Mohammed Bennamoun et al.

Detecting baggage threats is one of the most difficult tasks, even for expert officers. Many researchers have developed computer-aided screening systems to recognize these threats from the baggage X-ray scans. However, all of these frameworks are limited in identifying the contraband items under extreme occlusion. This paper presents a novel instance segmentation framework that utilizes trainable structure tensors to highlight the contours of the occluded and cluttered contraband items (by scanning multiple predominant orientations), while simultaneously suppressing the irrelevant baggage content. The proposed framework has been extensively tested on four publicly available X-ray datasets where it outperforms the state-of-the-art frameworks in terms of mean average precision scores. Furthermore, to the best of our knowledge, it is the only framework that has been validated on combined grayscale and colored scans obtained from four different types of X-ray scanners.

Taimur Hassan, Muhammad Usman Akram, Naoufel Werghi

Retinal lesions play a vital role in the accurate classification of retinal abnormalities. Many researchers have proposed deep lesion-aware screening systems that analyze and grade the progression of retinopathy. However, to the best of our knowledge, no literature exploits the tendency of these systems to generalize across multiple scanner specifications and multi-modal imagery. Towards this end, this paper presents a detailed evaluation of semantic segmentation, scene parsing and hybrid deep learning systems for extracting the retinal lesions such as intra-retinal fluid, sub-retinal fluid, hard exudates, drusen, and other chorioretinal anomalies from fused fundus and optical coherence tomography (OCT) imagery. Furthermore, we present a novel strategy exploiting the transferability of these models across multiple retinal scanner specifications. A total of 363 fundus and 173,915 OCT scans from seven publicly available datasets were used in this research (from which 297 fundus and 59,593 OCT scans were used for testing purposes). Overall, a hybrid retinal analysis and grading network (RAGNet), backboned through ResNet-50, stood first for extracting the retinal lesions, achieving a mean dice coefficient score of 0.822. Moreover, the complete source code and its documentation are released at: http://biomisa.org/index.php/downloads/.

Taimur Hassan, Samet Akcay, Mohammed Bennamoun et al.

In the last two decades, baggage scanning has globally become one of the prime aviation security concerns. Manual screening of the baggage items is tedious, error-prone, and compromise privacy. Hence, many researchers have developed X-ray imagery-based autonomous systems to address these shortcomings. This paper presents a cascaded structure tensor framework that can automatically extract and recognize suspicious items in heavily occluded and cluttered baggage. The proposed framework is unique, as it intelligently extracts each object by iteratively picking contour-based transitional information from different orientations and uses only a single feed-forward convolutional neural network for the recognition. The proposed framework has been rigorously evaluated using a total of 1,067,381 X-ray scans from publicly available GDXray and SIXray datasets where it outperformed the state-of-the-art solutions by achieving the mean average precision score of 0.9343 on GDXray and 0.9595 on SIXray for recognizing the highly cluttered and overlapping suspicious items. Furthermore, the proposed framework computationally achieves 4.76\% superior run-time performance as compared to the existing solutions based on publicly available object detectors

Bilal Hassan, Ramsha Ahmed, Taimur Hassan et al.

The current developments in the field of machine vision have opened new vistas towards deploying multimodal biometric recognition systems in various real-world applications. These systems have the ability to deal with the limitations of unimodal biometric systems which are vulnerable to spoofing, noise, non-universality and intra-class variations. In addition, the ocular traits among various biometric traits are preferably used in these recognition systems. Such systems possess high distinctiveness, permanence, and performance while, technologies based on other biometric traits (fingerprints, voice etc.) can be easily compromised. This work presents a novel deep learning framework called SIP-SegNet, which performs the joint semantic segmentation of ocular traits (sclera, iris and pupil) in unconstrained scenarios with greater accuracy. The acquired images under these scenarios exhibit purkinje reflexes, specular reflections, eye gaze, off-angle shots, low resolution, and various occlusions particularly by eyelids and eyelashes. To address these issues, SIP-SegNet begins with denoising the pristine image using denoising convolutional neural network (DnCNN), followed by reflection removal and image enhancement based on contrast limited adaptive histogram equalization (CLAHE). Our proposed framework then extracts the periocular information using adaptive thresholding and employs the fuzzy filtering technique to suppress this information. Finally, the semantic segmentation of sclera, iris and pupil is achieved using the densely connected fully convolutional encoder-decoder network. We used five CASIA datasets to evaluate the performance of SIP-SegNet based on various evaluation metrics. The simulation results validate the optimal segmentation of the proposed SIP-SegNet, with the mean f1 scores of 93.35, 95.11 and 96.69 for the sclera, iris and pupil classes respectively.

Taimur Hassan, Salman H. Khan, Samet Akcay et al.

In the last two decades, luggage scanning has globally become one of the prime aviation security concerns. Manual screening of the baggage items is a cumbersome, subjective and inefficient process. Hence, many researchers have developed Xray imagery-based autonomous systems to address these shortcomings. However, to the best of our knowledge, there is no framework, up to now, that can recognize heavily occluded and cluttered baggage items from multi-vendor X-ray scans. This paper presents a cascaded structure tensor framework which can automatically extract and recognize suspicious items irrespective of their position and orientation in the multi-vendor X-ray scans. The proposed framework is unique, as it intelligently extracts each object by iteratively picking contour based transitional information from different orientations and uses only a single feedforward convolutional neural network for the recognition. The proposed framework has been rigorously tested on publicly available GDXray and SIXray datasets containing a total of 1,067,381 X-ray scans where it significantly outperformed the state-of-the-art solutions by achieving the mean average precision score of 0.9343 and 0.9595 for extracting and recognizing suspicious items from GDXray and SIXray scans, respectively. Furthermore, the proposed framework has achieved 15.78% better time