O. León Barbed

Pablo Azagra, Carlos Sostres, Ángel Ferrandez et al.

Computer-assisted systems are becoming broadly used in medicine. In endoscopy, most research focuses on the automatic detection of polyps or other pathologies, but localization and navigation of the endoscope are completely performed manually by physicians. To broaden this research and bring spatial Artificial Intelligence to endoscopies, data from complete procedures is needed. This paper introduces the Endomapper dataset, the first collection of complete endoscopy sequences acquired during regular medical practice, making secondary use of medical data. Its main purpose is to facilitate the development and evaluation of Visual Simultaneous Localization and Mapping (VSLAM) methods in real endoscopy data. The dataset contains more than 24 hours of video. It is the first endoscopic dataset that includes endoscope calibration as well as the original calibration videos. Meta-data and annotations associated with the dataset vary from the anatomical landmarks, procedure labeling, segmentations, reconstructions, simulated sequences with ground truth and same patient procedures. The software used in this paper is publicly available.

O. L. Barbed, F. Chadebecq, J. Morlana et al.

There is often a significant gap between research results and applicability in routine medical practice. This work studies the performance of well-known local features on a medical dataset captured during routine colonoscopy procedures. Local feature extraction and matching is a key step for many computer vision applications, specially regarding 3D modelling. In the medical domain, handcrafted local features such as SIFT, with public pipelines such as COLMAP, are still a predominant tool for this kind of tasks. We explore the potential of the well known self-supervised approach SuperPoint, present an adapted variation for the endoscopic domain and propose a challenging evaluation framework. SuperPoint based models achieve significantly higher matching quality than commonly used local features in this domain. Our adapted model avoids features within specularity regions, a frequent and problematic artifact in endoscopic images, with consequent benefits for matching and reconstruction results.

O. Leon Barbed, José M. M. Montiel, Pascal Fua et al.

In this work, we focus on boosting the feature extraction to improve the performance of Structure-from-Motion (SfM) in endoscopy videos. We present SuperPoint-E, a new local feature extraction method that, using our proposed Tracking Adaptation supervision strategy, significantly improves the quality of feature detection and description in endoscopy. Extensive experimentation on real endoscopy recordings studies our approach's most suitable configuration and evaluates SuperPoint-E feature quality. The comparison with other baselines also shows that our 3D reconstructions are denser and cover more and longer video segments because our detector fires more densely and our features are more likely to survive (i.e. higher detection precision). In addition, our descriptor is more discriminative, making the guided matching step almost redundant. The presented approach brings significant improvements in the 3D reconstructions obtained, via SfM on endoscopy videos, compared to the original SuperPoint and the gold standard SfM COLMAP pipeline.