Xiangguo Sun

Yuhan Li, Zhixun Li, Peisong Wang et al.

Graph plays a significant role in representing and analyzing complex relationships in real-world applications such as citation networks, social networks, and biological data. Recently, Large Language Models (LLMs), which have achieved tremendous success in various domains, have also been leveraged in graph-related tasks to surpass traditional Graph Neural Networks (GNNs) based methods and yield state-of-the-art performance. In this survey, we first present a comprehensive review and analysis of existing methods that integrate LLMs with graphs. First of all, we propose a new taxonomy, which organizes existing methods into three categories based on the role (i.e., enhancer, predictor, and alignment component) played by LLMs in graph-related tasks. Then we systematically survey the representative methods along the three categories of the taxonomy. Finally, we discuss the remaining limitations of existing studies and highlight promising avenues for future research. The relevant papers are summarized and will be consistently updated at: https://github.com/yhLeeee/Awesome-LLMs-in-Graph-tasks.

Xiangguo Sun, Jiawen Zhang, Xixi Wu et al.

Artificial General Intelligence (AGI) has revolutionized numerous fields, yet its integration with graph data, a cornerstone in our interconnected world, remains nascent. This paper presents a pioneering survey on the emerging domain of graph prompts in AGI, addressing key challenges and opportunities in harnessing graph data for AGI applications. Despite substantial advancements in AGI across natural language processing and computer vision, the application to graph data is relatively underexplored. This survey critically evaluates the current landscape of AGI in handling graph data, highlighting the distinct challenges in cross-modality, cross-domain, and cross-task applications specific to graphs. Our work is the first to propose a unified framework for understanding graph prompt learning, offering clarity on prompt tokens, token structures, and insertion patterns in the graph domain. We delve into the intrinsic properties of graph prompts, exploring their flexibility, expressiveness, and interplay with existing graph models. A comprehensive taxonomy categorizes over 100 works in this field, aligning them with pre-training tasks across node-level, edge-level, and graph-level objectives. Additionally, we present, ProG, a Python library, and an accompanying website, to support and advance research in graph prompting. The survey culminates in a discussion of current challenges and future directions, offering a roadmap for research in graph prompting within AGI. Through this comprehensive analysis, we aim to catalyze further exploration and practical applications of AGI in graph data, underlining its potential to reshape AGI fields and beyond. ProG and the website can be accessed by \url{https://github.com/WxxShirley/Awesome-Graph-Prompt}, and \url{https://github.com/sheldonresearch/ProG}, respectively.

Xiangguo Sun, Hong Cheng, Jia Li et al.

Recently, ''pre-training and fine-tuning'' has been adopted as a standard workflow for many graph tasks since it can take general graph knowledge to relieve the lack of graph annotations from each application. However, graph tasks with node level, edge level, and graph level are far diversified, making the pre-training pretext often incompatible with these multiple tasks. This gap may even cause a ''negative transfer'' to the specific application, leading to poor results. Inspired by the prompt learning in natural language processing (NLP), which has presented significant effectiveness in leveraging prior knowledge for various NLP tasks, we study the prompting topic for graphs with the motivation of filling the gap between pre-trained models and various graph tasks. In this paper, we propose a novel multi-task prompting method for graph models. Specifically, we first unify the format of graph prompts and language prompts with the prompt token, token structure, and inserting pattern. In this way, the prompting idea from NLP can be seamlessly introduced to the graph area. Then, to further narrow the gap between various graph tasks and state-of-the-art pre-training strategies, we further study the task space of various graph applications and reformulate downstream problems to the graph-level task. Afterward, we introduce meta-learning to efficiently learn a better initialization for the multi-task prompt of graphs so that our prompting framework can be more reliable and general for different tasks. We conduct extensive experiments, results from which demonstrate the superiority of our method.

Haoran Yang, Hongxu Chen, Sixiao Zhang et al.

Graph contrastive learning has emerged as a powerful tool for unsupervised graph representation learning. The key to the success of graph contrastive learning is to acquire high-quality positive and negative samples as contrasting pairs for the purpose of learning underlying structural semantics of the input graph. Recent works usually sample negative samples from the same training batch with the positive samples, or from an external irrelevant graph. However, a significant limitation lies in such strategies, which is the unavoidable problem of sampling false negative samples. In this paper, we propose a novel method to utilize \textbf{C}ounterfactual mechanism to generate artificial hard negative samples for \textbf{G}raph \textbf{C}ontrastive learning, namely \textbf{CGC}, which has a different perspective compared to those sampling-based strategies. We utilize counterfactual mechanism to produce hard negative samples, which ensures that the generated samples are similar to, but have labels that different from the positive sample. The proposed method achieves satisfying results on several datasets compared to some traditional unsupervised graph learning methods and some SOTA graph contrastive learning methods. We also conduct some supplementary experiments to give an extensive illustration of the proposed method, including the performances of CGC with different hard negative samples and evaluations for hard negative samples generated with different similarity measurements.

Xiangguo Sun, Hong Cheng, Hang Dong et al.

Scoring systems are commonly seen for platforms in the era of big data. From credit scoring systems in financial services to membership scores in E-commerce shopping platforms, platform managers use such systems to guide users towards the encouraged activity pattern, and manage resources more effectively and more efficiently thereby. To establish such scoring systems, several "empirical criteria" are firstly determined, followed by dedicated top-down design for each factor of the score, which usually requires enormous effort to adjust and tune the scoring function in the new application scenario. What's worse, many fresh projects usually have no ground-truth or any experience to evaluate a reasonable scoring system, making the designing even harder. To reduce the effort of manual adjustment of the scoring function in every new scoring system, we innovatively study the scoring system from the preset empirical criteria without any ground truth, and propose a novel framework to improve the system from scratch. In this paper, we propose a "counter-empirical attacking" mechanism that can generate "attacking" behavior traces and try to break the empirical rules of the scoring system. Then an adversarial "enhancer" is applied to evaluate the scoring system and find the improvement strategy. By training the adversarial learning problem, a proper scoring function can be learned to be robust to the attacking activity traces that are trying to violate the empirical criteria. Extensive experiments have been conducted on two scoring systems including a shared computing resource platform and a financial credit system. The experimental results have validated the effectiveness of our proposed framework.

Xixi Wu, Yifei Shen, Fangzhou Ge et al.

Node classification is a fundamental task in graph analysis, with broad applications across various fields. Recent breakthroughs in Large Language Models (LLMs) have enabled LLM-based approaches for this task. Although many studies demonstrate the impressive performance of LLM-based methods, the lack of clear design guidelines may hinder their practical application. In this work, we aim to establish such guidelines through a fair and systematic comparison of these algorithms. As a first step, we developed LLMNodeBed, a comprehensive codebase and testbed for node classification using LLMs. It includes 10 homophilic datasets, 4 heterophilic datasets, 8 LLM-based algorithms, 8 classic baselines, and 3 learning paradigms. Subsequently, we conducted extensive experiments, training and evaluating over 2,700 models, to determine the key settings (e.g., learning paradigms and homophily) and components (e.g., model size and prompt) that affect performance. Our findings uncover 8 insights, e.g., (1) LLM-based methods can significantly outperform traditional methods in a semi-supervised setting, while the advantage is marginal in a supervised setting; (2) Graph Foundation Models can beat open-source LLMs but still fall short of strong LLMs like GPT-4o in a zero-shot setting. We hope that the release of LLMNodeBed, along with our insights, will facilitate reproducible research and inspire future studies in this field. Codes and datasets are released at \href{https://llmnodebed.github.io/}{\texttt{https://llmnodebed.github.io/}}.

Chenyi Zi, Haihong Zhao, Xiangguo Sun et al.

Artificial general intelligence on graphs has shown significant advancements across various applications, yet the traditional 'Pre-train & Fine-tune' paradigm faces inefficiencies and negative transfer issues, particularly in complex and few-shot settings. Graph prompt learning emerges as a promising alternative, leveraging lightweight prompts to manipulate data and fill the task gap by reformulating downstream tasks to the pretext. However, several critical challenges still remain: how to unify diverse graph prompt models, how to evaluate the quality of graph prompts, and to improve their usability for practical comparisons and selection. In response to these challenges, we introduce the first comprehensive benchmark for graph prompt learning. Our benchmark integrates SIX pre-training methods and FIVE state-of-the-art graph prompt techniques, evaluated across FIFTEEN diverse datasets to assess performance, flexibility, and efficiency. We also present 'ProG', an easy-to-use open-source library that streamlines the execution of various graph prompt models, facilitating objective evaluations. Additionally, we propose a unified framework that categorizes existing graph prompt methods into two main approaches: prompts as graphs and prompts as tokens. This framework enhances the applicability and comparison of graph prompt techniques. The code is available at: https://github.com/sheldonresearch/ProG.

Haihong Zhao, Aochuan Chen, Xiangguo Sun et al.

Large Language Models (LLMs) have revolutionized the fields of computer vision (CV) and natural language processing (NLP). One of the most notable advancements of LLMs is that a single model is trained on vast and diverse datasets spanning multiple domains -- a paradigm we term `All in One'. This methodology empowers LLMs with super generalization capabilities, facilitating an encompassing comprehension of varied data distributions. Leveraging these capabilities, a single LLM demonstrates remarkable versatility across a variety of domains -- a paradigm we term `One for All'. However, applying this idea to the graph field remains a formidable challenge, with cross-domain pretraining often resulting in negative transfer. This issue is particularly important in few-shot learning scenarios, where the paucity of training data necessitates the incorporation of external knowledge sources. In response to this challenge, we propose a novel approach called Graph COordinators for PrEtraining (GCOPE), that harnesses the underlying commonalities across diverse graph datasets to enhance few-shot learning. Our novel methodology involves a unification framework that amalgamates disparate graph datasets during the pretraining phase to distill and transfer meaningful knowledge to target tasks. Extensive experiments across multiple graph datasets demonstrate the superior efficacy of our approach. By successfully leveraging the synergistic potential of multiple graph datasets for pretraining, our work stands as a pioneering contribution to the realm of graph foundational model.

Guibin Zhang, Yanwei Yue, Xiangguo Sun et al.

Recent advancements in large language model (LLM)-based agents have demonstrated that collective intelligence can significantly surpass the capabilities of individual agents, primarily due to well-crafted inter-agent communication topologies. Despite the diverse and high-performing designs available, practitioners often face confusion when selecting the most effective pipeline for their specific task: \textit{Which topology is the best choice for my task, avoiding unnecessary communication token overhead while ensuring high-quality solution?} In response to this dilemma, we introduce G-Designer, an adaptive, efficient, and robust solution for multi-agent deployment, which dynamically designs task-aware, customized communication topologies. Specifically, G-Designer models the multi-agent system as a multi-agent network, leveraging a variational graph auto-encoder to encode both the nodes (agents) and a task-specific virtual node, and decodes a task-adaptive and high-performing communication topology. Extensive experiments on six benchmarks showcase that G-Designer is: \textbf{(1) high-performing}, achieving superior results on MMLU with accuracy at $84.50\%$ and on HumanEval with pass@1 at $89.90\%$; \textbf{(2) task-adaptive}, architecting communication protocols tailored to task difficulty, reducing token consumption by up to $95.33\%$ on HumanEval; and \textbf{(3) adversarially robust}, defending against agent adversarial attacks with merely $0.3\%$ accuracy drop.

Guibin Zhang, Xiangguo Sun, Yanwei Yue et al.

Graph Neural Networks (GNNs) have demonstrated superior performance across various graph learning tasks but face significant computational challenges when applied to large-scale graphs. One effective approach to mitigate these challenges is graph sparsification, which involves removing non-essential edges to reduce computational overhead. However, previous graph sparsification methods often rely on a single global sparsity setting and uniform pruning criteria, failing to provide customized sparsification schemes for each node's complex local context. In this paper, we introduce Mixture-of-Graphs (MoG), leveraging the concept of Mixture-of-Experts (MoE), to dynamically select tailored pruning solutions for each node. Specifically, MoG incorporates multiple sparsifier experts, each characterized by unique sparsity levels and pruning criteria, and selects the appropriate experts for each node. Subsequently, MoG performs a mixture of the sparse graphs produced by different experts on the Grassmann manifold to derive an optimal sparse graph. One notable property of MoG is its entirely local nature, as it depends on the specific circumstances of each individual node. Extensive experiments on four large-scale OGB datasets and two superpixel datasets, equipped with five GNN backbones, demonstrate that MoG (I) identifies subgraphs at higher sparsity levels ($8.67\%\sim 50.85\%$), with performance equal to or better than the dense graph, (II) achieves $1.47-2.62\times$ speedup in GNN inference with negligible performance drop, and (III) boosts ``top-student'' GNN performance ($1.02\%\uparrow$ on RevGNN+\textsc{ogbn-proteins} and $1.74\%\uparrow$ on DeeperGCN+\textsc{ogbg-ppa}).

Xi Chen, Siwei Zhang, Yun Xiong et al.

Temporal Interaction Graphs (TIGs) are widely utilized to represent real-world systems. To facilitate representation learning on TIGs, researchers have proposed a series of TIG models. However, these models are still facing two tough gaps between the pre-training and downstream predictions in their ``pre-train, predict'' training paradigm. First, the temporal discrepancy between the pre-training and inference data severely undermines the models' applicability in distant future predictions on the dynamically evolving data. Second, the semantic divergence between pretext and downstream tasks hinders their practical applications, as they struggle to align with their learning and prediction capabilities across application scenarios. Recently, the ``pre-train, prompt'' paradigm has emerged as a lightweight mechanism for model generalization. Applying this paradigm is a potential solution to solve the aforementioned challenges. However, the adaptation of this paradigm to TIGs is not straightforward. The application of prompting in static graph contexts falls short in temporal settings due to a lack of consideration for time-sensitive dynamics and a deficiency in expressive power. To address this issue, we introduce Temporal Interaction Graph Prompting (TIGPrompt), a versatile framework that seamlessly integrates with TIG models, bridging both the temporal and semantic gaps. In detail, we propose a temporal prompt generator to offer temporally-aware prompts for different tasks. These prompts stand out for their minimalistic design, relying solely on the tuning of the prompt generator with very little supervision data. To cater to varying computational resource demands, we propose an extended ``pre-train, prompt-based fine-tune'' paradigm, offering greater flexibility. Through extensive experiments, the TIGPrompt demonstrates the SOTA performance and remarkable efficiency advantages.

Yingying Wang, Yun Xiong, Xixi Wu et al.

Drug combinations can cause adverse drug-drug interactions(DDIs). Identifying specific effects is crucial for developing safer therapies. Previous works on DDI event prediction have typically been limited to using labels of specific events as supervision, which renders them insufficient to address two significant challenges: (1) the bias caused by \textbf{highly imbalanced event distribution} where certain interaction types are vastly under-represented. (2) the \textbf{scarcity of labeled data for rare events}, a pervasive issue where rare yet potentially critical interactions are often overlooked or under-explored due to limited available data. In response, we offer ``DDIPrompt'', an innovative solution inspired by the recent advancements in graph prompt learning. Our framework aims to address these issues by leveraging the intrinsic knowledge from pre-trained models, which can be efficiently deployed with minimal downstream data. Specifically, to solve the first challenge, DDIPrompt features a hierarchical pre-training strategy to foster a generalized and comprehensive understanding of drug properties. It captures intra-molecular structures through augmented links based on structural proximity between drugs, further learns inter-molecular interactions emphasizing edge connections rather than concrete catagories. For the second challenge, we implement a prototype-enhanced prompting mechanism during inference. This mechanism, refined by few-shot examples from each category, effectively harnesses the rich pre-training knowledge to enhance prediction accuracy, particularly for these rare but crucial interactions. Extensive experiments on two benchmark datasets demonstrate DDIPrompt's SOTA performance, especially for those rare DDI events.

Minbin Huang, Runhui Huang, Han Shi et al.

The development of Multi-modal Large Language Models (MLLMs) enhances Large Language Models (LLMs) with the ability to perceive data formats beyond text, significantly advancing a range of downstream applications, such as visual question answering and image captioning. However, the substantial computational costs associated with processing high-resolution images and videos pose a barrier to their broader adoption. To address this challenge, compressing vision tokens in MLLMs has emerged as a promising approach to reduce inference costs. While existing methods conduct token reduction in the feature alignment phase. In this paper, we introduce VisToG, a novel grouping mechanism that leverages the capabilities of pre-trained vision encoders to group similar image segments without the need for segmentation masks. Specifically, we concatenate semantic tokens to represent image semantic segments after the linear projection layer before feeding into the vision encoder. Besides, with the isolated attention we adopt, VisToG can identify and eliminate redundant visual tokens utilizing the prior knowledge in the pre-trained vision encoder, which effectively reduces computational demands. Extensive experiments demonstrate the effectiveness of VisToG, maintaining 98.1% of the original performance while achieving a reduction of over 27\% inference time.

Xiangguo Sun, Hong Cheng, Jia Li et al.

This paper is an extended abstract of our original work published in KDD23, where we won the best research paper award (Xiangguo Sun, Hong Cheng, Jia Li, Bo Liu, and Jihong Guan. All in one: Multi-task prompting for graph neural networks. KDD 23) The paper introduces a novel approach to bridging the gap between pre-trained graph models and the diverse tasks they're applied to, inspired by the success of prompt learning in NLP. Recognizing the challenge of aligning pre-trained models with varied graph tasks (node level, edge level, and graph level), which can lead to negative transfer and poor performance, we propose a multi-task prompting method for graphs. This method involves unifying graph and language prompt formats, enabling NLP's prompting strategies to be adapted for graph tasks. By analyzing the task space of graph applications, we reformulate problems to fit graph-level tasks and apply meta-learning to improve prompt initialization for multiple tasks. Experiments show our method's effectiveness in enhancing model performance across different graph tasks. Beyond the original work, in this extended abstract, we further discuss the graph prompt from a bigger picture and provide some of the latest work toward this area.

Sixu An, Xiangguo Sun, Yicong Li et al.

Personality analysis from online short videos has gained prominence due to its applications in personalized recommendation systems, sentiment analysis, and human-computer interaction. Traditional assessment methods, such as questionnaires based on the Big Five Personality Framework, are limited by self-report biases and are impractical for large-scale or real-time analysis. Leveraging the rich, multi-modal data present in short videos offers a promising alternative for more accurate personality inference. However, integrating these diverse and asynchronous modalities poses significant challenges, particularly in aligning time-varying data and ensuring models generalize well to new domains with limited labeled data. In this paper, we propose a novel multi-modal personality analysis framework that addresses these challenges by synchronizing and integrating features from multiple modalities and enhancing model generalization through domain adaptation. We introduce a timestamp-based modality alignment mechanism that synchronizes data based on spoken word timestamps, ensuring accurate correspondence across modalities and facilitating effective feature integration. To capture temporal dependencies and inter-modal interactions, we employ Bidirectional Long Short-Term Memory networks and self-attention mechanisms, allowing the model to focus on the most informative features for personality prediction. Furthermore, we develop a gradient-based domain adaptation method that transfers knowledge from multiple source domains to improve performance in target domains with scarce labeled data. Extensive experiments on real-world datasets demonstrate that our framework significantly outperforms existing methods in personality prediction tasks, highlighting its effectiveness in capturing complex behavioral cues and robustness in adapting to new domains.

Sixiao Zhang, Hongxu Chen, Haoran Yang et al.

Recently, transformers have shown promising performance in learning graph representations. However, there are still some challenges when applying transformers to real-world scenarios due to the fact that deep transformers are hard to train from scratch and the quadratic memory consumption w.r.t. the number of nodes. In this paper, we propose Graph Masked Autoencoders (GMAEs), a self-supervised transformer-based model for learning graph representations. To address the above two challenges, we adopt the masking mechanism and the asymmetric encoder-decoder design. Specifically, GMAE takes partially masked graphs as input, and reconstructs the features of the masked nodes. The encoder and decoder are asymmetric, where the encoder is a deep transformer and the decoder is a shallow transformer. The masking mechanism and the asymmetric design make GMAE a memory-efficient model compared with conventional transformers. We show that, when serving as a conventional self-supervised graph representation model, GMAE achieves state-of-the-art performance on both the graph classification task and the node classification task under common downstream evaluation protocols. We also show that, compared with training in an end-to-end manner from scratch, we can achieve comparable performance after pre-training and fine-tuning using GMAE while simplifying the training process.

Sixiao Zhang, Hongxu Chen, Xiangguo Sun et al.

Graph contrastive learning is the state-of-the-art unsupervised graph representation learning framework and has shown comparable performance with supervised approaches. However, evaluating whether the graph contrastive learning is robust to adversarial attacks is still an open problem because most existing graph adversarial attacks are supervised models, which means they heavily rely on labels and can only be used to evaluate the graph contrastive learning in a specific scenario. For unsupervised graph representation methods such as graph contrastive learning, it is difficult to acquire labels in real-world scenarios, making traditional supervised graph attack methods difficult to be applied to test their robustness. In this paper, we propose a novel unsupervised gradient-based adversarial attack that does not rely on labels for graph contrastive learning. We compute the gradients of the adjacency matrices of the two views and flip the edges with gradient ascent to maximize the contrastive loss. In this way, we can fully use multiple views generated by the graph contrastive learning models and pick the most informative edges without knowing their labels, and therefore can promisingly support our model adapted to more kinds of downstream tasks. Extensive experiments show that our attack outperforms unsupervised baseline attacks and has comparable performance with supervised attacks in multiple downstream tasks including node classification and link prediction. We further show that our attack can be transferred to other graph representation models as well.

Hongxu Chen, Hongzhi Yin, Xiangguo Sun et al.

Cross-platform account matching plays a significant role in social network analytics, and is beneficial for a wide range of applications. However, existing methods either heavily rely on high-quality user generated content (including user profiles) or suffer from data insufficiency problem if only focusing on network topology, which brings researchers into an insoluble dilemma of model selection. In this paper, to address this problem, we propose a novel framework that considers multi-level graph convolutions on both local network structure and hypergraph structure in a unified manner. The proposed method overcomes data insufficiency problem of existing work and does not necessarily rely on user demographic information. Moreover, to adapt the proposed method to be capable of handling large-scale social networks, we propose a two-phase space reconciliation mechanism to align the embedding spaces in both network partitioning based parallel training and account matching across different social networks. Extensive experiments have been conducted on two large-scale real-life social networks. The experimental results demonstrate that the proposed method outperforms the state-of-the-art models with a big margin.