John A. Quinn

Wojciech Sirko, Emmanuel Asiedu Brempong, Juliana T. C. Marcos et al.

Mapping buildings and roads automatically with remote sensing typically requires high-resolution imagery, which is expensive to obtain and often sparsely available. In this work we demonstrate how multiple 10 m resolution Sentinel-2 images can be used to generate 50 cm resolution building and road segmentation masks. This is done by training a `student' model with access to Sentinel-2 images to reproduce the predictions of a `teacher' model which has access to corresponding high-resolution imagery. While the predictions do not have all the fine detail of the teacher model, we find that we are able to retain much of the performance: for building segmentation we achieve 79.0\% mIoU, compared to the high-resolution teacher model accuracy of 85.5\% mIoU. We also describe two related methods that work on Sentinel-2 imagery: one for counting individual buildings which achieves $R^2 = 0.91$ against true counts and one for predicting building height with 1.5 meter mean absolute error. This work opens up new possibilities for using freely available Sentinel-2 imagery for a range of tasks that previously could only be done with high-resolution satellite imagery.

Wojciech Sirko, Sergii Kashubin, Marvin Ritter et al.

Identifying the locations and footprints of buildings is vital for many practical and scientific purposes. Such information can be particularly useful in developing regions where alternative data sources may be scarce. In this work, we describe a model training pipeline for detecting buildings across the entire continent of Africa, using 50 cm satellite imagery. Starting with the U-Net model, widely used in satellite image analysis, we study variations in architecture, loss functions, regularization, pre-training, self-training and post-processing that increase instance segmentation performance. Experiments were carried out using a dataset of 100k satellite images across Africa containing 1.75M manually labelled building instances, and further datasets for pre-training and self-training. We report novel methods for improving performance of building detection with this type of model, including the use of mixup (mAP +0.12) and self-training with soft KL loss (mAP +0.06). The resulting pipeline obtains good results even on a wide variety of challenging rural and urban contexts, and was used to create the Open Buildings dataset of 516M Africa-wide detected footprints.

Tomaz Logar, Joseph Bullock, Edoardo Nemni et al.

Humanitarian response to natural disasters and conflicts can be assisted by satellite image analysis. In a humanitarian context, very specific satellite image analysis tasks must be done accurately and in a timely manner to provide operational support. We present PulseSatellite, a collaborative satellite image analysis tool which leverages neural network models that can be retrained on-the fly and adapted to specific humanitarian contexts and geographies. We present two case studies, in mapping shelters and floods respectively, that illustrate the capabilities of PulseSatellite.

Raghav Menon, Astik Biswas, Armin Saeb et al.

We present our first efforts in building an automatic speech recognition system for Somali, an under-resourced language, using 1.57 hrs of annotated speech for acoustic model training. The system is part of an ongoing effort by the United Nations (UN) to implement keyword spotting systems supporting humanitarian relief programmes in parts of Africa where languages are severely under-resourced. We evaluate several types of acoustic model, including recent neural architectures. Language model data augmentation using a combination of recurrent neural networks (RNN) and long short-term memory neural networks (LSTMs) as well as the perturbation of acoustic data are also considered. We find that both types of data augmentation are beneficial to performance, with our best system using a combination of convolutional neural networks (CNNs), time-delay neural networks (TDNNs) and bi-directional long short term memory (BLSTMs) to achieve a word error rate of 53.75%.

John A. Quinn, Rose Nakasi, Pius K. B. Mugagga et al.

Point of care diagnostics using microscopy and computer vision methods have been applied to a number of practical problems, and are particularly relevant to low-income, high disease burden areas. However, this is subject to the limitations in sensitivity and specificity of the computer vision methods used. In general, deep learning has recently revolutionised the field of computer vision, in some cases surpassing human performance for other object recognition tasks. In this paper, we evaluate the performance of deep convolutional neural networks on three different microscopy tasks: diagnosis of malaria in thick blood smears, tuberculosis in sputum samples, and intestinal parasite eggs in stool samples. In all cases accuracy is very high and substantially better than an alternative approach more representative of traditional medical imaging techniques.

Song Liu, John A. Quinn, Michael U. Gutmann et al.

We propose a new method for detecting changes in Markov network structure between two sets of samples. Instead of naively fitting two Markov network models separately to the two data sets and figuring out their difference, we \emph{directly} learn the network structure change by estimating the ratio of Markov network models. This density-ratio formulation naturally allows us to introduce sparsity in the network structure change, which highly contributes to enhancing interpretability. Furthermore, computation of the normalization term, which is a critical bottleneck of the naive approach, can be remarkably mitigated. We also give the dual formulation of the optimization problem, which further reduces the computation cost for large-scale Markov networks. Through experiments, we demonstrate the usefulness of our method.

John A. Quinn, Masashi Sugiyama

Hidden Markov models and their variants are the predominant sequential classification method in such domains as speech recognition, bioinformatics and natural language processing. Being generative rather than discriminative models, however, their classification performance is a drawback. In this paper we apply ideas from the field of density ratio estimation to bypass the difficult step of learning likelihood functions in HMMs. By reformulating inference and model fitting in terms of density ratios and applying a fast kernel-based estimation method, we show that it is possible to obtain a striking increase in discriminative performance while retaining the probabilistic qualities of the HMM. We demonstrate experimentally that this formulation makes more efficient use of training data than alternative approaches.