Yihao Li

Yihao Li, Rachid Zeghlache, Ikram Brahim et al.

Diabetic Retinopathy (DR) is a severe complication of diabetes that can cause blindness. Although effective treatments exist (notably laser) to slow the progression of the disease and prevent blindness, the best treatment remains prevention through regular check-ups (at least once a year) with an ophthalmologist. Optical Coherence Tomography Angiography (OCTA) allows for the visualization of the retinal vascularization, and the choroid at the microvascular level in great detail. This allows doctors to diagnose DR with more precision. In recent years, algorithms for DR diagnosis have emerged along with the development of deep learning and the improvement of computer hardware. However, these usually focus on retina photography. There are no current methods that can automatically analyze DR using Ultra-Wide OCTA (UW-OCTA). The Diabetic Retinopathy Analysis Challenge 2022 (DRAC22) provides a standardized UW-OCTA dataset to train and test the effectiveness of various algorithms on three tasks: lesions segmentation, quality assessment, and DR grading. In this paper, we will present our solutions for the three tasks of the DRAC22 challenge. The obtained results are promising and have allowed us to position ourselves in the TOP 5 of the segmentation task, the TOP 4 of the quality assessment task, and the TOP 3 of the DR grading task. The code is available at \url{https://github.com/Mostafa-EHD/Diabetic_Retinopathy_OCTA}.

Yihao Li, Yanyi Lai, Chuan Chen et al.

Blockchain-empowered federated learning (FL) has provoked extensive research recently. Various blockchain-based federated learning algorithm, architecture and mechanism have been designed to solve issues like single point failure and data falsification brought by centralized FL paradigm. Moreover, it is easier to allocate incentives to nodes with the help of the blockchain. Various centralized federated learning frameworks like FedML, have emerged in the community to help boost the research on FL. However, decentralized blockchain-based federated learning framework is still missing, which cause inconvenience for researcher to reproduce or verify the algorithm performance based on blockchain. Inspired by the above issues, we have designed and developed a blockchain-based federated learning framework by embedding Ethereum network. This report will present the overall structure of this framework, which proposes a code practice paradigm for the combination of FL with blockchain and, at the same time, compatible with normal FL training task. In addition to implement some blockchain federated learning algorithms on smart contract to help execute a FL training, we also propose a model ownership authentication architecture based on blockchain and model watermarking to protect the intellectual property rights of models. These mechanism on blockchain shows an underlying support of blockchain for federated learning to provide a verifiable training, aggregation and incentive distribution procedure and thus we named this framework VeryFL (A Verify Federated Learninig Framework Embedded with Blockchain). The source code is avaliable on https://github.com/GTMLLab/VeryFL.

Lianghuan Huang, Yihao Li, Saeed Salehi et al.

Representations of the world, arguably, contain information about features (e.g. something is blue, something is a circle) but also information about which features are part of the same object (e.g. the circle is blue), which we call binding information. Any system with the ability to understand scenes with multiple objects must be able to solve the binding problem: it needs to know which features belong together. However, despite work showing that Vision Transformers (ViTs) know which patches belong together, it is not known whether current deep learning models learn to exhibit binding information, i.e., for features. We may believe that there is not much binding information, after all misattributing features to wrong objects is a common failure of ViT-based architectures, especially in scenes with objects sharing features. Here we formalize the binding problem with an information-theoretic approach, and introduce a probing method to measure binding information in model representations. We perform experiments on ViTs, measuring binding from different components of the architecture, such as the image summary token [CLS] or the spatial tokens. We use datasets with different binding challenges, such as feature sharing, occlusion, and natural features, while comparing the performance of several pre-trained ViTs. Overall, our research demonstrates binding as a key ingredient to strong visual recognition and reasoning.

Fuhui Zhou, Yihao Li, Ming Xu et al.

Semantic communication is envisioned as a promising technique to break through the Shannon limit. However, semantic inference and semantic error correction have not been well studied. Moreover, error correction methods of existing semantic communication frameworks are inexplicable and inflexible, which limits the achievable performance. In this paper, to tackle this issue, a knowledge graph is exploited to develop semantic communication systems. Two cognitive semantic communication frameworks are proposed for the single-user and multiple-user communication scenarios. Moreover, a simple, general, and interpretable semantic alignment algorithm for semantic information detection is proposed. Furthermore, an effective semantic correction algorithm is proposed by mining the inference rule from the knowledge graph. Additionally, the pre-trained model is fine-tuned to recover semantic information. For the multi-user cognitive semantic communication system, a message recovery algorithm is proposed to distinguish messages of different users by matching the knowledge level between the source and the destination. Extensive simulation results conducted on a public dataset demonstrate that our proposed single-user and multi-user cognitive semantic communication systems are superior to benchmark communication systems in terms of the data compression rate and communication reliability. Finally, we present realistic single-user and multi-user cognitive semantic communication systems results by building a software-defined radio prototype system.

Yihao Li, Mostafa El Habib Daho, Pierre-Henri Conze et al.

Multimodal information is frequently available in medical tasks. By combining information from multiple sources, clinicians are able to make more accurate judgments. In recent years, multiple imaging techniques have been used in clinical practice for retinal analysis: 2D fundus photographs, 3D optical coherence tomography (OCT) and 3D OCT angiography, etc. Our paper investigates three multimodal information fusion strategies based on deep learning to solve retinal analysis tasks: early fusion, intermediate fusion, and hierarchical fusion. The commonly used early and intermediate fusions are simple but do not fully exploit the complementary information between modalities. We developed a hierarchical fusion approach that focuses on combining features across multiple dimensions of the network, as well as exploring the correlation between modalities. These approaches were applied to glaucoma and diabetic retinopathy classification, using the public GAMMA dataset (fundus photographs and OCT) and a private dataset of PlexElite 9000 (Carl Zeis Meditec Inc.) OCT angiography acquisitions, respectively. Our hierarchical fusion method performed the best in both cases and paved the way for better clinical diagnosis.

Mostafa El Habib Daho, Yihao Li, Rachid Zeghlache et al.

Diabetic Retinopathy (DR), a prevalent and severe complication of diabetes, affects millions of individuals globally, underscoring the need for accurate and timely diagnosis. Recent advancements in imaging technologies, such as Ultra-WideField Color Fundus Photography (UWF-CFP) imaging and Optical Coherence Tomography Angiography (OCTA), provide opportunities for the early detection of DR but also pose significant challenges given the disparate nature of the data they produce. This study introduces a novel multimodal approach that leverages these imaging modalities to notably enhance DR classification. Our approach integrates 2D UWF-CFP images and 3D high-resolution 6x6 mm$^3$ OCTA (both structure and flow) images using a fusion of ResNet50 and 3D-ResNet50 models, with Squeeze-and-Excitation (SE) blocks to amplify relevant features. Additionally, to increase the model's generalization capabilities, a multimodal extension of Manifold Mixup, applied to concatenated multimodal features, is implemented. Experimental results demonstrate a remarkable enhancement in DR classification performance with the proposed multimodal approach compared to methods relying on a single modality only. The methodology laid out in this work holds substantial promise for facilitating more accurate, early detection of DR, potentially improving clinical outcomes for patients.

Rachid Zeghlache, Pierre-Henri Conze, Mostafa El Habib Daho et al.

Longitudinal analysis in medical imaging is crucial to investigate the progressive changes in anatomical structures or disease progression over time. In recent years, a novel class of algorithms has emerged with the goal of learning disease progression in a self-supervised manner, using either pairs of consecutive images or time series of images. By capturing temporal patterns without external labels or supervision, longitudinal self-supervised learning (LSSL) has become a promising avenue. To better understand this core method, we explore in this paper the LSSL algorithm under different scenarios. The original LSSL is embedded in an auto-encoder (AE) structure. However, conventional self-supervised strategies are usually implemented in a Siamese-like manner. Therefore, (as a first novelty) in this study, we explore the use of Siamese-like LSSL. Another new core framework named neural ordinary differential equation (NODE). NODE is a neural network architecture that learns the dynamics of ordinary differential equations (ODE) through the use of neural networks. Many temporal systems can be described by ODE, including modeling disease progression. We believe that there is an interesting connection to make between LSSL and NODE. This paper aims at providing a better understanding of those core algorithms for learning the disease progression with the mentioned change. In our different experiments, we employ a longitudinal dataset, named OPHDIAT, targeting diabetic retinopathy (DR) follow-up. Our results demonstrate the application of LSSL without including a reconstruction term, as well as the potential of incorporating NODE in conjunction with LSSL.

Yushuang Wu, Zizheng Yan, Ce Chen et al.

3D shape completion from point clouds is a challenging task, especially from scans of real-world objects. Considering the paucity of 3D shape ground truths for real scans, existing works mainly focus on benchmarking this task on synthetic data, e.g. 3D computer-aided design models. However, the domain gap between synthetic and real data limits the generalizability of these methods. Thus, we propose a new task, SCoDA, for the domain adaptation of real scan shape completion from synthetic data. A new dataset, ScanSalon, is contributed with a bunch of elaborate 3D models created by skillful artists according to scans. To address this new task, we propose a novel cross-domain feature fusion method for knowledge transfer and a novel volume-consistent self-training framework for robust learning from real data. Extensive experiments prove our method is effective to bring an improvement of 6%~7% mIoU.

Rachid Zeghlache, Pierre-Henri Conze, Mostafa El Habib Daho et al.

Longitudinal imaging is able to capture both static anatomical structures and dynamic changes in disease progression toward earlier and better patient-specific pathology management. However, conventional approaches rarely take advantage of longitudinal information for detection and prediction purposes, especially for Diabetic Retinopathy (DR). In the past years, Mix-up training and pretext tasks with longitudinal context have effectively enhanced DR classification results and captured disease progression. In the meantime, a novel type of neural network named Neural Ordinary Differential Equation (NODE) has been proposed for solving ordinary differential equations, with a neural network treated as a black box. By definition, NODE is well suited for solving time-related problems. In this paper, we propose to combine these three aspects to detect and predict DR progression. Our framework, Longitudinal Mixing Training (LMT), can be considered both as a regularizer and as a pretext task that encodes the disease progression in the latent space. Additionally, we evaluate the trained model weights on a downstream task with a longitudinal context using standard and longitudinal pretext tasks. We introduce a new way to train time-aware models using $t_{mix}$, a weighted average time between two consecutive examinations. We compare our approach to standard mixing training on DR classification using OPHDIAT a longitudinal retinal Color Fundus Photographs (CFP) dataset. We were able to predict whether an eye would develop a severe DR in the following visit using a single image, with an AUC of 0.798 compared to baseline results of 0.641. Our results indicate that our longitudinal pretext task can learn the progression of DR disease and that introducing $t_{mix}$ augmentation is beneficial for time-aware models.

Bo Qian, Hao Chen, Xiangning Wang et al.

Computer-assisted automatic analysis of diabetic retinopathy (DR) is of great importance in reducing the risks of vision loss and even blindness. Ultra-wide optical coherence tomography angiography (UW-OCTA) is a non-invasive and safe imaging modality in DR diagnosis system, but there is a lack of publicly available benchmarks for model development and evaluation. To promote further research and scientific benchmarking for diabetic retinopathy analysis using UW-OCTA images, we organized a challenge named "DRAC - Diabetic Retinopathy Analysis Challenge" in conjunction with the 25th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2022). The challenge consists of three tasks: segmentation of DR lesions, image quality assessment and DR grading. The scientific community responded positively to the challenge, with 11, 12, and 13 teams from geographically diverse institutes submitting different solutions in these three tasks, respectively. This paper presents a summary and analysis of the top-performing solutions and results for each task of the challenge. The obtained results from top algorithms indicate the importance of data augmentation, model architecture and ensemble of networks in improving the performance of deep learning models. These findings have the potential to enable new developments in diabetic retinopathy analysis. The challenge remains open for post-challenge registrations and submissions for benchmarking future methodology developments.

Hui Xu, Yihao Li, Wei Zhao et al.

Automatic segmentation of head and neck cancer (HNC) tumors and lymph nodes plays a crucial role in the optimization treatment strategy and prognosis analysis. This study aims to employ nnU-Net for automatic segmentation and radiomics for recurrence-free survival (RFS) prediction using pretreatment PET/CT images in multi-center HNC cohort. A multi-center HNC dataset with 883 patients (524 patients for training, 359 for testing) was provided in HECKTOR 2022. A bounding box of the extended oropharyngeal region was retrieved for each patient with fixed size of 224 x 224 x 224 $mm^{3}$. Then 3D nnU-Net architecture was adopted to automatic segmentation of primary tumor and lymph nodes synchronously.Based on predicted segmentation, ten conventional features and 346 standardized radiomics features were extracted for each patient. Three prognostic models were constructed containing conventional and radiomics features alone, and their combinations by multivariate CoxPH modelling. The statistical harmonization method, ComBat, was explored towards reducing multicenter variations. Dice score and C-index were used as evaluation metrics for segmentation and prognosis task, respectively. For segmentation task, we achieved mean dice score around 0.701 for primary tumor and lymph nodes by 3D nnU-Net. For prognostic task, conventional and radiomics models obtained the C-index of 0.658 and 0.645 in the test set, respectively, while the combined model did not improve the prognostic performance with the C-index of 0.648.

Yihao Li, Yanyi Lai, Tianchi Liao et al.

With the development of practical deep learning models like generative AI, their excellent performance has brought huge economic value. For instance, ChatGPT has attracted more than 100 million users in three months. Since the model training requires a lot of data and computing power, a well-performing deep learning model is behind a huge effort and cost. Facing various model attacks, unauthorized use and abuse from the network that threaten the interests of model owners, in addition to considering legal and other administrative measures, it is equally important to protect the model's copyright from the technical means. By using the model watermarking technology, we point out the possibility of building a unified platform for model ownership verification. Given the application history of blockchain in copyright verification and the drawbacks of a centralized third-party, this paper considers combining model watermarking technology and blockchain to build a unified model copyright protection platform. By a new solution we called Tokenized Model, it protects the model's copyright by reliable ownership record and verification mechanism. It also promotes the financial value of model by constructing the model's transaction process and contribution shares of a model. In the typical case study, we also study the various performance under usual scenario to verify the effectiveness of this platform.

Jiahao Chang, Yinglin Xu, Yihao Li et al.

Point cloud registration is a fundamental problem for large-scale 3D scene scanning and reconstruction. With the help of deep learning, registration methods have evolved significantly, reaching a nearly-mature stage. As the introduction of Neural Radiance Fields (NeRF), it has become the most popular 3D scene representation as its powerful view synthesis capabilities. Regarding NeRF representation, its registration is also required for large-scale scene reconstruction. However, this topic extremly lacks exploration. This is due to the inherent challenge to model the geometric relationship among two scenes with implicit representations. The existing methods usually convert the implicit representation to explicit representation for further registration. Most recently, Gaussian Splatting (GS) is introduced, employing explicit 3D Gaussian. This method significantly enhances rendering speed while maintaining high rendering quality. Given two scenes with explicit GS representations, in this work, we explore the 3D registration task between them. To this end, we propose GaussReg, a novel coarse-to-fine framework, both fast and accurate. The coarse stage follows existing point cloud registration methods and estimates a rough alignment for point clouds from GS. We further newly present an image-guided fine registration approach, which renders images from GS to provide more detailed geometric information for precise alignment. To support comprehensive evaluation, we carefully build a scene-level dataset called ScanNet-GSReg with 1379 scenes obtained from the ScanNet dataset and collect an in-the-wild dataset called GSReg. Experimental results demonstrate our method achieves state-of-the-art performance on multiple datasets. Our GaussReg is 44 times faster than HLoc (SuperPoint as the feature extractor and SuperGlue as the matcher) with comparable accuracy.

Jieyun Bai, Zihao Zhou, Yitong Tang et al.

A substantial proportion (45\%) of maternal deaths, neonatal deaths, and stillbirths occur during the intrapartum phase, with a particularly high burden in low- and middle-income countries. Intrapartum biometry plays a critical role in monitoring labor progression; however, the routine use of ultrasound in resource-limited settings is hindered by a shortage of trained sonographers. To address this challenge, the Intrapartum Ultrasound Grand Challenge (IUGC), co-hosted with MICCAI 2024, was launched. The IUGC introduces a clinically oriented multi-task automatic measurement framework that integrates standard plane classification, fetal head-pubic symphysis segmentation, and biometry, enabling algorithms to exploit complementary task information for more accurate estimation. Furthermore, the challenge releases the largest multi-center intrapartum ultrasound video dataset to date, comprising 774 videos (68,106 frames) collected from three hospitals, providing a robust foundation for model training and evaluation. In this study, we present a comprehensive overview of the challenge design, review the submissions from eight participating teams, and analyze their methods from five perspectives: preprocessing, data augmentation, learning strategy, model architecture, and post-processing. In addition, we perform a systematic analysis of the benchmark results to identify key bottlenecks, explore potential solutions, and highlight open challenges for future research. Although encouraging performance has been achieved, our findings indicate that the field remains at an early stage, and further in-depth investigation is required before large-scale clinical deployment. All benchmark solutions and the complete dataset have been publicly released to facilitate reproducible research and promote continued advances in automatic intrapartum ultrasound biometry.

Zhen Huang, Yihao Li, Dong Pei et al.

Text-driven fashion synthesis and design is an extremely valuable part of artificial intelligence generative content(AIGC), which has the potential to propel a tremendous revolution in the traditional fashion industry. To advance the research on text-driven fashion synthesis and design, we introduce a new dataset comprising a million high-resolution fashion images with rich structured textual(FIRST) descriptions. In the FIRST, there is a wide range of attire categories and each image-paired textual description is organized at multiple hierarchical levels. Experiments on prevalent generative models trained over FISRT show the necessity of FIRST. We invite the community to further develop more intelligent fashion synthesis and design systems that make fashion design more creative and imaginative based on our dataset. The dataset will be released soon.

Yihao Li, Philippe Zhang, Yubo Tan et al.

Myopic macular degeneration is the most common complication of myopia and the primary cause of vision loss in individuals with pathological myopia. Early detection and prompt treatment are crucial in preventing vision impairment due to myopic maculopathy. This was the focus of the Myopic Maculopathy Analysis Challenge (MMAC), in which we participated. In task 1, classification of myopic maculopathy, we employed the contrastive learning framework, specifically SimCLR, to enhance classification accuracy by effectively capturing enriched features from unlabeled data. This approach not only improved the intrinsic understanding of the data but also elevated the performance of our classification model. For Task 2 (segmentation of myopic maculopathy plus lesions), we have developed independent segmentation models tailored for different lesion segmentation tasks and implemented a test-time augmentation strategy to further enhance the model's performance. As for Task 3 (prediction of spherical equivalent), we have designed a deep regression model based on the data distribution of the dataset and employed an integration strategy to enhance the model's prediction accuracy. The results we obtained are promising and have allowed us to position ourselves in the Top 6 of the classification task, the Top 2 of the segmentation task, and the Top 1 of the prediction task. The code is available at \url{https://github.com/liyihao76/MMAC_LaTIM_Solution}.

Yihao Li, Mostafa El Habib Daho, Pierre-Henri Conze et al.

Multimodal medical imaging plays a pivotal role in clinical diagnosis and research, as it combines information from various imaging modalities to provide a more comprehensive understanding of the underlying pathology. Recently, deep learning-based multimodal fusion techniques have emerged as powerful tools for improving medical image classification. This review offers a thorough analysis of the developments in deep learning-based multimodal fusion for medical classification tasks. We explore the complementary relationships among prevalent clinical modalities and outline three main fusion schemes for multimodal classification networks: input fusion, intermediate fusion (encompassing single-level fusion, hierarchical fusion, and attention-based fusion), and output fusion. By evaluating the performance of these fusion techniques, we provide insight into the suitability of different network architectures for various multimodal fusion scenarios and application domains. Furthermore, we delve into challenges related to network architecture selection, handling incomplete multimodal data management, and the potential limitations of multimodal fusion. Finally, we spotlight the promising future of Transformer-based multimodal fusion techniques and give recommendations for future research in this rapidly evolving field.

Yihao Li, Ru Zhang, Jianyi Liu

While Large Language Models (LLMs) demonstrate exceptional performance in a multitude of Natural Language Processing (NLP) tasks, they encounter challenges in practical applications, including issues with hallucinations, inadequate knowledge updating, and limited transparency in the reasoning process. To overcome these limitations, this study innovatively proposes a collaborative training-free reasoning scheme involving tight cooperation between Knowledge Graph (KG) and LLMs. This scheme first involves using LLMs to iteratively explore KG, selectively retrieving a task-relevant knowledge subgraph to support reasoning. The LLMs are then guided to further combine inherent implicit knowledge to reason on the subgraph while explicitly elucidating the reasoning process. Through such a cooperative approach, our scheme achieves more reliable knowledge-based reasoning and facilitates the tracing of the reasoning results. Experimental results show that our scheme significantly progressed across multiple datasets, notably achieving over a 10% improvement on the QALD10 dataset compared to the best baseline and the fine-tuned state-of-the-art (SOTA) work. Building on this success, this study hopes to offer a valuable reference for future research in the fusion of KG and LLMs, thereby enhancing LLMs' proficiency in solving complex issues.

Mostafa El Habib Daho, Yihao Li, Rachid Zeghlache et al.

Diabetic Retinopathy (DR), an ocular complication of diabetes, is a leading cause of blindness worldwide. Traditionally, DR is monitored using Color Fundus Photography (CFP), a widespread 2-D imaging modality. However, DR classifications based on CFP have poor predictive power, resulting in suboptimal DR management. Optical Coherence Tomography Angiography (OCTA) is a recent 3-D imaging modality offering enhanced structural and functional information (blood flow) with a wider field of view. This paper investigates automatic DR severity assessment using 3-D OCTA. A straightforward solution to this task is a 3-D neural network classifier. However, 3-D architectures have numerous parameters and typically require many training samples. A lighter solution consists in using 2-D neural network classifiers processing 2-D en-face (or frontal) projections and/or 2-D cross-sectional slices. Such an approach mimics the way ophthalmologists analyze OCTA acquisitions: 1) en-face flow maps are often used to detect avascular zones and neovascularization, and 2) cross-sectional slices are commonly analyzed to detect macular edemas, for instance. However, arbitrary data reduction or selection might result in information loss. Two complementary strategies are thus proposed to optimally summarize OCTA volumes with 2-D images: 1) a parametric en-face projection optimized through deep learning and 2) a cross-sectional slice selection process controlled through gradient-based attribution. The full summarization and DR classification pipeline is trained from end to end. The automatic 2-D summary can be displayed in a viewer or printed in a report to support the decision. We show that the proposed 2-D summarization and classification pipeline outperforms direct 3-D classification with the advantage of improved interpretability.

Yi Luo, Linghang Shi, Yihao Li et al.

Conventional biomedical research is increasingly labor-intensive due to the exponential growth of scientific literature and datasets. Artificial intelligence (AI), particularly Large Language Models (LLMs), has the potential to revolutionize this process by automating various steps. Still, significant challenges remain, including the need for multidisciplinary expertise, logicality of experimental design, and performance measurements. This paper introduces BioResearcher, the first end-to-end automated system designed to streamline the entire biomedical research process involving dry lab experiments. BioResearcher employs a modular multi-agent architecture, integrating specialized agents for search, literature processing, experimental design, and programming. By decomposing complex tasks into logically related sub-tasks and utilizing a hierarchical learning approach, BioResearcher effectively addresses the challenges of multidisciplinary requirements and logical complexity. Furthermore, BioResearcher incorporates an LLM-based reviewer for in-process quality control and introduces novel evaluation metrics to assess the quality and automation of experimental protocols. BioResearcher successfully achieves an average execution success rate of 63.07% across eight previously unmet research objectives. The generated protocols, on average, outperform typical agent systems by 22.0% on five quality metrics. The system demonstrates significant potential to reduce researchers' workloads and accelerate biomedical discoveries, paving the way for future innovations in automated research systems.

Lin Hong, Xin Wang, Yihao Li et al.

Inspired by the biological visual system that selectively allocates attention to efficiently identify salient objects or regions, underwater salient instance segmentation (USIS) aims to jointly address the problems of where to look (saliency prediction) and what is there (instance segmentation) in underwater scenarios. However, USIS remains an underexplored challenge due to the inaccessibility and dynamic nature of underwater environments, as well as the scarcity of large-scale, high-quality annotated datasets. In this paper, we introduce USIS16K, a large-scale dataset comprising 16,151 high-resolution underwater images collected from diverse environmental settings and covering 158 categories of underwater objects. Each image is annotated with high-quality instance-level salient object masks, representing a significant advance in terms of diversity, complexity, and scalability. Furthermore, we provide benchmark evaluations on underwater object detection and USIS tasks using USIS16K. To facilitate future research in this domain, the dataset and benchmark models are publicly available.

Yihao Li, Jiayi Xin, Miranda Muqing Miao et al.

Proficient multilingual speakers often intentionally switch languages in the middle of a conversation. Similarly, recent reasoning-focused bilingual large language models (LLMs) with strong capabilities in both languages exhibit language mixing-alternating languages within their chain of thought. Discouraging this behavior in DeepSeek-R1 was found to degrade accuracy, suggesting that language mixing may benefit reasoning. In this work, we study language switching in Chinese-English bilingual reasoning models. We identify reinforcement learning with verifiable rewards (RLVR) as the critical training stage that leads to language mixing. We show that language mixing can enhance reasoning: enforcing monolingual decoding reduces accuracy by 5.6 percentage points on MATH500. Additionally, a lightweight probe can be trained to predict whether a potential language switch would benefit or harm reasoning, and when used to guide decoding, increases accuracy by 2.92 percentage points. Our findings suggest that language mixing is not merely a byproduct of multilingual training, but is a strategic reasoning behavior.

Philippe Zhang, Weili Jiang, Yihao Li et al.

Age-related Macular Degeneration (AMD) is a prevalent eye condition affecting visual acuity. Anti-vascular endothelial growth factor (anti-VEGF) treatments have been effective in slowing the progression of neovascular AMD, with better outcomes achieved through timely diagnosis and consistent monitoring. Tracking the progression of neovascular activity in OCT scans of patients with exudative AMD allows for the development of more personalized and effective treatment plans. This was the focus of the Monitoring Age-related Macular Degeneration Progression in Optical Coherence Tomography (MARIO) challenge, in which we participated. In Task 1, which involved classifying the evolution between two pairs of 2D slices from consecutive OCT acquisitions, we employed a fusion CNN network with model ensembling to further enhance the model's performance. For Task 2, which focused on predicting progression over the next three months based on current exam data, we proposed the Patch Progression Masked Autoencoder that generates an OCT for the next exam and then classifies the evolution between the current OCT and the one generated using our solution from Task 1. The results we achieved allowed us to place in the Top 10 for both tasks. Some team members are part of the same organization as the challenge organizers; therefore, we are not eligible to compete for the prize.

Rachid Zeghlache, Pierre-Henri Conze, Mostafa El Habib Daho et al.

This work proposes a novel framework for analyzing disease progression using time-aware neural ordinary differential equations (NODE). We introduce a "time-aware head" in a framework trained through self-supervised learning (SSL) to leverage temporal information in latent space for data augmentation. This approach effectively integrates NODEs with SSL, offering significant performance improvements compared to traditional methods that lack explicit temporal integration. We demonstrate the effectiveness of our strategy for diabetic retinopathy progression prediction using the OPHDIAT database. Compared to the baseline, all NODE architectures achieve statistically significant improvements in area under the ROC curve (AUC) and Kappa metrics, highlighting the efficacy of pre-training with SSL-inspired approaches. Additionally, our framework promotes stable training for NODEs, a commonly encountered challenge in time-aware modeling.

Rachid Zeghlache, Pierre-Henri Conze, Mostafa El Habib Daho et al.

Pre-training strategies based on self-supervised learning (SSL) have proven to be effective pretext tasks for many downstream tasks in computer vision. Due to the significant disparity between medical and natural images, the application of typical SSL is not straightforward in medical imaging. Additionally, those pretext tasks often lack context, which is critical for computer-aided clinical decision support. In this paper, we developed a longitudinal masked auto-encoder (MAE) based on the well-known Transformer-based MAE. In particular, we explored the importance of time-aware position embedding as well as disease progression-aware masking. Taking into account the time between examinations instead of just scheduling them offers the benefit of capturing temporal changes and trends. The masking strategy, for its part, evolves during follow-up to better capture pathological changes, ensuring a more accurate assessment of disease progression. Using OPHDIAT, a large follow-up screening dataset targeting diabetic retinopathy (DR), we evaluated the pre-trained weights on a longitudinal task, which is to predict the severity label of the next visit within 3 years based on the past time series examinations. Our results demonstrated the relevancy of both time-aware position embedding and masking strategies based on disease progression knowledge. Compared to popular baseline models and standard longitudinal Transformers, these simple yet effective extensions significantly enhance the predictive ability of deep classification models.

Yihao Li, Saeed Salehi, Lyle Ungar et al.

Object binding, the brain's ability to bind the many features that collectively represent an object into a coherent whole, is central to human cognition. It groups low-level perceptual features into high-level object representations, stores those objects efficiently and compositionally in memory, and supports human reasoning about individual object instances. While prior work often imposes object-centric attention (e.g., Slot Attention) explicitly to probe these benefits, it remains unclear whether this ability naturally emerges in pre-trained Vision Transformers (ViTs). Intuitively, they could: recognizing which patches belong to the same object should be useful for downstream prediction and thus guide attention. Motivated by the quadratic nature of self-attention, we hypothesize that ViTs represent whether two patches belong to the same object, a property we term IsSameObject. We decode IsSameObject from patch embeddings across ViT layers using a similarity probe, which reaches over 90% accuracy. Crucially, this object-binding capability emerges reliably in self-supervised ViTs (DINO, MAE, CLIP), but markedly weaker in ImageNet-supervised models, suggesting that binding is not a trivial architectural artifact, but an ability acquired through specific pretraining objectives. We further discover that IsSameObject is encoded in a low-dimensional subspace on top of object features, and that this signal actively guides attention. Ablating IsSameObject from model activations degrades downstream performance and works against the learning objective, implying that emergent object binding naturally serves the pretraining objective. Our findings challenge the view that ViTs lack object binding and highlight how symbolic knowledge of "which parts belong together" emerges naturally in a connectionist system.

Zhuoheng Gao, Yihao Li, Jiyao Zhang et al. · pku

Conventional frame-based cameras often struggle with stereo depth estimation in rapidly changing scenes. In contrast, bio-inspired spike cameras emit asynchronous events at microsecond-level resolution, providing an alternative sensing modality. However, existing methods lack specialized stereo algorithms and benchmarks tailored to the spike data. To address this gap, we propose SpikeStereoNet, a brain-inspired framework and the first to estimate stereo depth directly from raw spike streams. The model fuses raw spike streams from two viewpoints and iteratively refines depth estimation through a recurrent spiking neural network (RSNN) update module. To benchmark our approach, we introduce a large-scale synthetic spike stream dataset and a real-world stereo spike dataset with dense depth annotations. SpikeStereoNet outperforms existing methods on both datasets by leveraging spike streams' ability to capture subtle edges and intensity shifts in challenging regions such as textureless surfaces and extreme lighting conditions. Furthermore, our framework exhibits strong data efficiency, maintaining high accuracy even with substantially reduced training data. The source code and datasets will be publicly available.

Rachid Zeghlache, Ikram Brahim, Pierre-Henri Conze et al.

The MARIO challenge, held at MICCAI 2024, focused on advancing the automated detection and monitoring of age-related macular degeneration (AMD) through the analysis of optical coherence tomography (OCT) images. Designed to evaluate algorithmic performance in detecting neovascular activity changes within AMD, the challenge incorporated unique multi-modal datasets. The primary dataset, sourced from Brest, France, was used by participating teams to train and test their models. The final ranking was determined based on performance on this dataset. An auxiliary dataset from Algeria was used post-challenge to evaluate population and device shifts from submitted solutions. Two tasks were involved in the MARIO challenge. The first one was the classification of evolution between two consecutive 2D OCT B-scans. The second one was the prediction of future AMD evolution over three months for patients undergoing anti-vascular endothelial growth factor (VEGF) therapy. Thirty-five teams participated, with the top 12 finalists presenting their methods. This paper outlines the challenge's structure, tasks, data characteristics, and winning methodologies, setting a benchmark for AMD monitoring using OCT, infrared imaging, and clinical data (such as the number of visits, age, gender, etc.). The results of this challenge indicate that artificial intelligence (AI) performs as well as a physician in measuring AMD progression (Task 1) but is not yet able of predicting future evolution (Task 2).

Fuhui Zhou, Yihao Li, Xinyuan Zhang et al.

Semantic communication is envisioned as a promising technique to break through the Shannon limit. However, the existing semantic communication frameworks do not involve inference and error correction, which limits the achievable performance. In this paper, in order to tackle this issue, a cognitive semantic communication framework is proposed by exploiting knowledge graph. Moreover, a simple, general and interpretable solution for semantic information detection is developed by exploiting triples as semantic symbols. It also allows the receiver to correct errors occurring at the symbolic level. Furthermore, the pre-trained model is fine-tuned to recover semantic information, which overcomes the drawback that a fixed bit length coding is used to encode sentences of different lengths. Simulation results on the public WebNLG corpus show that our proposed system is superior to other benchmark systems in terms of the data compression rate and the reliability of communication.

Mohsen Mesgar, Paul Youssef, Lin Li et al.

Our conversational agent UKP-ATHENA assists NLP researchers in finding and exploring scientific literature, identifying relevant authors, planning or post-processing conference visits, and preparing paper submissions using a unified interface based on natural language inputs and responses. UKP-ATHENA enables new access paths to our swiftly evolving research area with its massive amounts of scientific information and high turnaround times. UKP-ATHENA's responses connect information from multiple heterogeneous sources which researchers currently have to explore manually one after another. Unlike a search engine, UKP-ATHENA maintains the context of a conversation to allow for efficient information access on papers, researchers, and conferences. Our architecture consists of multiple components with reference implementations that can be easily extended by new skills and domains. Our user-based evaluation shows that UKP-ATHENA already responds 45% of different formulations of defined intents with 37% information coverage rate.