Xiangmin Xu

Huachao Yan, Kailing Guo, Shiwei Song et al.

Diagnosing seizure onset zone (SOZ) is a challenge in neurosurgery, where stereoelectroencephalography (sEEG) serves as a critical technique. In sEEG SOZ identification, the existing studies focus solely on the intra-patient representation of epileptic information, overlooking the general features of epilepsy across patients and feature interdependencies between feature elements in each contact site. In order to address the aforementioned challenges, we propose the shared attention-based autoencoder (sATAE). sATAE is trained by sEEG data across all patients, with attention blocks introduced to enhance the representation of interdependencies between feature elements. Considering the spatial diversity of sEEG across patients, we introduce graph-based method for identification SOZ of each patient. However, the current graph-based methods for sEEG SOZ identification rely exclusively on static graphs to model epileptic networks. Inspired by the finding of neuroscience that epileptic network is intricately characterized by the interplay of sophisticated equilibrium between fluctuating and stable states, we design the hierarchical fusion-based graph convolution network (HFGCN) to identify the SOZ. HFGCN integrates the dynamic and static characteristics of epileptic networks through hierarchical weighting across different hierarchies, facilitating a more comprehensive learning of epileptic features and enriching node information for sEEG SOZ identification. Combining sATAE and HFGCN, we perform comprehensive experiments with sATAE-HFGCN on the self-build sEEG dataset, which includes sEEG data from 17 patients with temporal lobe epilepsy. The results show that our method, sATAE-HFGCN, achieves superior performance for identifying the SOZ of each patient, effectively addressing the aforementioned challenges, providing an efficient solution for sEEG-based SOZ identification.

Nitin Agarwal, Xiangmin Xu, Gopi Meenakshisundaram

Brain mapping research in most neuroanatomical laboratories relies on conventional processing techniques, which often introduce histological artifacts such as tissue tears and tissue loss. In this paper we present techniques and algorithms for automatic registration and 3D reconstruction of conventionally produced mouse brain slices in a standardized atlas space. This is achieved first by constructing a virtual 3D mouse brain model from annotated slices of Allen Reference Atlas (ARA). Virtual re-slicing of the reconstructed model generates ARA-based slice images corresponding to the microscopic images of histological brain sections. These image pairs are aligned using a geometric approach through contour images. Histological artifacts in the microscopic images are detected and removed using Constrained Delaunay Triangulation before performing global alignment. Finally, non-linear registration is performed by solving Laplace's equation with Dirichlet boundary conditions. Our methods provide significant improvements over previously reported registration techniques for the tested slices in 3D space, especially on slices with significant histological artifacts. Further, as an application we count the number of neurons in various anatomical regions using a dataset of 51 microscopic slices from a single mouse brain. This work represents a significant contribution to this subfield of neuroscience as it provides tools to neuroanatomist for analyzing and processing histological data.