John O. Dabiri

Roni H. Goldshmid, John O. Dabiri, John E. Sader

High-resolution, near-ground wind-speed data are critical for improving the accuracy of weather predictions and climate models,$^{1-3}$ supporting wildfire control efforts,$^{4-7}$ and ensuring the safe passage of airplanes during takeoff and landing maneouvers.$^{8,9}$ Quantitative wind speed anemometry generally employs on-site instrumentation for accurate single-position data or sophisticated remote techniques such as Doppler radar for quantitative field measurements. It is widely recognized that the wind-induced motion of vegetation depends in a complex manner on their structure and mechanical properties, obviating their use in quantitative anemometry.$^{10-14}$ We analyze measurements on a host of different vegetation showing that leaf motion can be decoupled from the leaf's branch and support structure, at low-to-moderate wind speed, $U_{wind}$. This wind speed range is characterized by a leaf Reynolds number, enabling the development of a remote, quantitative anemometry method based on the formula, $U_{wind}\approx740\sqrt{μU_{leaf}/ρD}$, that relies only on the leaf size $D$, its measured fluctuating (RMS) speed $U_{leaf}$, the air viscosity $μ$, and its mass density $ρ$. This formula is corroborated by a first-principles model and validated using a host of laboratory and field tests on diverse vegetation types, ranging from oak, olive, and magnolia trees through to camphor and bullgrass. The findings of this study open the door to a new paradigm in anemometry, using natural vegetation to enable remote and rapid quantitative field measurements at global locations with minimal cost.

Jennifer J. Sun, Serim Ryou, Roni Goldshmid et al.

We propose a method for learning the posture and structure of agents from unlabelled behavioral videos. Starting from the observation that behaving agents are generally the main sources of movement in behavioral videos, our method, Behavioral Keypoint Discovery (B-KinD), uses an encoder-decoder architecture with a geometric bottleneck to reconstruct the spatiotemporal difference between video frames. By focusing only on regions of movement, our approach works directly on input videos without requiring manual annotations. Experiments on a variety of agent types (mouse, fly, human, jellyfish, and trees) demonstrate the generality of our approach and reveal that our discovered keypoints represent semantically meaningful body parts, which achieve state-of-the-art performance on keypoint regression among self-supervised methods. Additionally, B-KinD achieve comparable performance to supervised keypoints on downstream tasks, such as behavior classification, suggesting that our method can dramatically reduce model training costs vis-a-vis supervised methods.

Peter Gunnarson, Ioannis Mandralis, Guido Novati et al.

Efficient point-to-point navigation in the presence of a background flow field is important for robotic applications such as ocean surveying. In such applications, robots may only have knowledge of their immediate surroundings or be faced with time-varying currents, which limits the use of optimal control techniques for planning trajectories. Here, we apply a novel Reinforcement Learning algorithm to discover time-efficient navigation policies to steer a fixed-speed swimmer through an unsteady two-dimensional flow field. The algorithm entails inputting environmental cues into a deep neural network that determines the swimmer's actions, and deploying Remember and Forget Experience replay. We find that the resulting swimmers successfully exploit the background flow to reach the target, but that this success depends on the type of sensed environmental cue. Surprisingly, a velocity sensing approach outperformed a bio-mimetic vorticity sensing approach by nearly two-fold in success rate. Equipped with local velocity measurements, the reinforcement learning algorithm achieved near 100% success in reaching the target locations while approaching the time-efficiency of paths found by a global optimal control planner.

Jennifer L Cardona, Michael F Howland, John O Dabiri

Wind energy resource quantification, air pollution monitoring, and weather forecasting all rely on rapid, accurate measurement of local wind conditions. Visual observations of the effects of wind---the swaying of trees and flapping of flags, for example---encode information regarding local wind conditions that can potentially be leveraged for visual anemometry that is inexpensive and ubiquitous. Here, we demonstrate a coupled convolutional neural network and recurrent neural network architecture that extracts the wind speed encoded in visually recorded flow-structure interactions of a flag and tree in naturally occurring wind. Predictions for wind speeds ranging from 0.75-11 m/s showed agreement with measurements from a cup anemometer on site, with a root-mean-squared error approaching the natural wind speed variability due to atmospheric turbulence. Generalizability of the network was demonstrated by successful prediction of wind speed based on recordings of other flags in the field and in a controlled wind tunnel test. Furthermore, physics-based scaling of the flapping dynamics accurately predicts the dependence of the network performance on the video frame rate and duration.

Kristy L. Schlueter-Kuck, John O. Dabiri

Lagrangian data assimilation is a complex problem in oceanic and atmospheric modeling. Tracking drifters in large-scale geophysical flows can involve uncertainty in drifter location, complex inertial effects, and other factors which make comparing them to simulated Lagrangian trajectories from numerical models extremely challenging. Temporal and spatial discretization, factors necessary in modeling large scale flows, also contribute to separation between real and simulated drifter trajectories. The chaotic advection inherent in these turbulent flows tends to separate even closely spaced tracer particles, making error metrics based solely on drifter displacements unsuitable for estimating model parameters. We propose to instead use error in the coherent structure coloring (CSC) field to assess model skill. The CSC field provides a spatial representation of the underlying coherent patterns in the flow, and we show that it is a more robust metric for assessing model accuracy. Through the use of two test cases, one considering spatial uncertainty in particle initialization, and one examining the influence of stochastic error along a trajectory and temporal discretization, we show that error in the coherent structure coloring field can be used to accurately determine single or multiple simultaneously unknown model parameters, whereas a conventional error metric based on error in drifter displacement fails. Because the CSC field enhances the difference in error between correct and incorrect model parameters, error minima in model parameter sweeps become more distinct. The effectiveness and robustness of this method for single and multi-parameter estimation in analytical flows suggests that Lagrangian data assimilation for real oceanic and atmospheric models would benefit from a similar approach.

Brooke E. Husic, Kristy L. Schlueter-Kuck, John O. Dabiri

The clustering of data into physically meaningful subsets often requires assumptions regarding the number, size, or shape of the subgroups. Here, we present a new method, simultaneous coherent structure coloring (sCSC), which accomplishes the task of unsupervised clustering without a priori guidance regarding the underlying structure of the data. sCSC performs a sequence of binary splittings on the dataset such that the most dissimilar data points are required to be in separate clusters. To achieve this, we obtain a set of orthogonal coordinates along which dissimilarity in the dataset is maximized from a generalized eigenvalue problem based on the pairwise dissimilarity between the data points to be clustered. This sequence of bifurcations produces a binary tree representation of the system, from which the number of clusters in the data and their interrelationships naturally emerge. To illustrate the effectiveness of the method in the absence of a priori assumptions, we apply it to three exemplary problems in fluid dynamics. Then, we illustrate its capacity for interpretability using a high-dimensional protein folding simulation dataset. While we restrict our examples to dynamical physical systems in this work, we anticipate straightforward translation to other fields where existing analysis tools require ad hoc assumptions on the data structure, lack the interpretability of the present method, or in which the underlying processes are less accessible, such as genomics and neuroscience.

Kristy L. Schlueter-Kuck, John O. Dabiri

We present a method for identifying the coherent structures associated with individual Lagrangian flow trajectories even where only sparse particle trajectory data is available. The method, based on techniques in spectral graph theory, uses the Coherent Structure Coloring vector and associated eigenvectors to analyze the distance in higher-dimensional eigenspace between a selected reference trajectory and other tracer trajectories in the flow. By analyzing this distance metric in a hierarchical clustering, the coherent structure of which the reference particle is a member can be identified. This algorithm is proven successful in identifying coherent structures of varying complexities in canonical unsteady flows. Additionally, the method is able to assess the relative coherence of the associated structure in comparison to the surrounding flow. Although the method is demonstrated here in the context of fluid flow kinematics, the generality of the approach allows for its potential application to other unsupervised clustering problems in dynamical systems such as neuronal activity, gene expression, or social networks.