Tong Ye

Tong Ye, Hang Yu, Tengfei Ma et al.

Large Language Models have demonstrated remarkable progress in general-purpose capabilities and can achieve strong performance in specific domains through fine-tuning on domain-specific data. However, acquiring high-quality data for target domains remains a significant challenge. Existing data synthesis approaches follow a deductive paradigm, heavily relying on explicit domain descriptions expressed in natural language and careful prompt engineering, limiting their applicability in real-world scenarios where domains are difficult to describe or formally articulate. In this work, we tackle the underexplored problem of domain-specific data synthesis through an inductive paradigm, where the target domain is defined only through a set of reference examples, particularly when domain characteristics are difficult to articulate in natural language. We propose a novel framework, DOMINO, that learns a minimal sufficient domain representation from reference samples and leverages it to guide the generation of domain-aligned synthetic data. DOMINO integrates prompt tuning with a contrastive disentanglement objective to separate domain-level patterns from sample-specific noise, mitigating overfitting while preserving core domain characteristics. Theoretically, we prove that DOMINO expands the support of the synthetic data distribution, ensuring greater diversity. Empirically, on challenging coding benchmarks where domain definitions are implicit, fine-tuning on data synthesized by DOMINO improves Pass@1 accuracy by up to 4.63\% over strong, instruction-tuned backbones, demonstrating its effectiveness and robustness. This work establishes a new paradigm for domain-specific data synthesis, enabling practical and scalable domain adaptation without manual prompt design or natural language domain specifications.

Yuanbo Hou, Zhaoyi Liu, Tong Ye et al.

Weakly labeled datasets such as AudioSet have driven recent progress in audio tagging. However, annotation quality varies across sound classes. Labels may be incomplete, ambiguous, or unreliable, which introduces class-dependent supervision bias during optimisation. The issue becomes harder as real and generated audio are increasingly mixed in training, and generated samples do not always match their intended semantic labels. Prior work mainly addressed unreliable supervision from missing-positive labels, while this paper targets three other sources of unreliable supervision: spurious additions, misassignments between similar classes, and weakened label evidence. These effects introduce class-dependent optimisation bias that is not explicitly modeled by most existing methods. To bridge this gap, the paper proposes a Class-wise Supervision Unreliability (CSU) framework that controls supervision strength at the class level during training. CSU learns a separate unreliability parameter for each class and down-weights less reliable supervision without changing the model architecture or inference process. To support evaluations, this paper also introduces ESC-FreeGen50, a manually verified benchmark of 50 sound classes that combines real and generated audio. Experiments on controlled benchmarks and AudioSet show that CSU improves robustness across different architectures and different sources of supervision unreliability. The results indicate that explicit class-wise modeling of supervision unreliability is an effective and practical strategy for robust audio tagging under large-scale weakly labeled training. Code and data are available at: https://github.com/Yuanbo2020/CSU

Tong Ye, Shijing Si, Jianzong Wang et al.

Deep neural retrieval models have amply demonstrated their power but estimating the reliability of their predictions remains challenging. Most dialog response retrieval models output a single score for a response on how relevant it is to a given question. However, the bad calibration of deep neural network results in various uncertainty for the single score such that the unreliable predictions always misinform user decisions. To investigate these issues, we present an efficient calibration and uncertainty estimation framework PG-DRR for dialog response retrieval models which adds a Gaussian Process layer to a deterministic deep neural network and recovers conjugacy for tractable posterior inference by Pólya-Gamma augmentation. Finally, PG-DRR achieves the lowest empirical calibration error (ECE) in the in-domain datasets and the distributional shift task while keeping $R_{10}@1$ and MAP performance.

Tong Ye, Lingfei Wu, Tengfei Ma et al.

Automatically generating function summaries for binaries is an extremely valuable but challenging task, since it involves translating the execution behavior and semantics of the low-level language (assembly code) into human-readable natural language. However, most current works on understanding assembly code are oriented towards generating function names, which involve numerous abbreviations that make them still confusing. To bridge this gap, we focus on generating complete summaries for binary functions, especially for stripped binary (no symbol table and debug information in reality). To fully exploit the semantics of assembly code, we present a control flow graph and pseudo code guided binary code summarization framework called CP-BCS. CP-BCS utilizes a bidirectional instruction-level control flow graph and pseudo code that incorporates expert knowledge to learn the comprehensive binary function execution behavior and logic semantics. We evaluate CP-BCS on 3 different binary optimization levels (O1, O2, and O3) for 3 different computer architectures (X86, X64, and ARM). The evaluation results demonstrate CP-BCS is superior and significantly improves the efficiency of reverse engineering.

Tong Ye, Zhitao Li, Jianzong Wang et al.

Deep neural networks have achieved remarkable performance in retrieval-based dialogue systems, but they are shown to be ill calibrated. Though basic calibration methods like Monte Carlo Dropout and Ensemble can calibrate well, these methods are time-consuming in the training or inference stages. To tackle these challenges, we propose an efficient uncertainty calibration framework GPF-BERT for BERT-based conversational search, which employs a Gaussian Process layer and the focal loss on top of the BERT architecture to achieve a high-quality neural ranker. Extensive experiments are conducted to verify the effectiveness of our method. In comparison with basic calibration methods, GPF-BERT achieves the lowest empirical calibration error (ECE) in three in-domain datasets and the distributional shift tasks, while yielding the highest $R_{10}@1$ and MAP performance on most cases. In terms of time consumption, our GPF-BERT has an 8$\times$ speedup.

Tong Ye, Shijing Si, Jianzong Wang et al.

Although deep Neural Networks (DNNs) have achieved tremendous success in audio classification tasks, their uncertainty calibration are still under-explored. A well-calibrated model should be accurate when it is certain about its prediction and indicate high uncertainty when it is likely to be inaccurate. In this work, we investigate the uncertainty calibration for deep audio classifiers. In particular, we empirically study the performance of popular calibration methods: (i) Monte Carlo Dropout, (ii) ensemble, (iii) focal loss, and (iv) spectral-normalized Gaussian process (SNGP), on audio classification datasets. To this end, we evaluate (i-iv) for the tasks of environment sound and music genre classification. Results indicate that uncalibrated deep audio classifiers may be over-confident, and SNGP performs the best and is very efficient on the two datasets of this paper.

Hanjiang Zhu, Pedro Martelleto Rezende, Zhang Yang et al.

This work proposes Bonnet, an ultra-fast sparse-volume pipeline for whole-body bone segmentation from CT scans. Accurate bone segmentation is important for surgical planning and anatomical analysis, but existing 3D voxel-based models such as nnU-Net and STU-Net require heavy computation and often take several minutes per scan, which limits time-critical use. The proposed Bonnet addresses this by integrating a series of novel framework components including HU-based bone thresholding, patch-wise inference with a sparse spconv-based U-Net, and multi-window fusion into a full-volume prediction. Trained on TotalSegmentator and evaluated without additional tuning on RibSeg, CT-Pelvic1K, and CT-Spine1K, Bonnet achieves high Dice across ribs, pelvis, and spine while running in only 2.69 seconds per scan on an RTX A6000. Compared to strong voxel baselines, Bonnet attains a similar accuracy but reduces inference time by roughly 25x on the same hardware and tiling setup. The toolkit and pre-trained models will be released at https://github.com/HINTLab/Bonnet.

Zhao Zhang, Xiwen Chen, William Richardson et al.

Decreased myocardial capillary density has been reported as an important histopathological feature associated with various heart disorders. Quantitative assessment of cardiac capillarization typically involves double immunostaining of cardiomyocytes (CMs) and capillaries in myocardial slices. In contrast, single immunostaining of basement membrane components is a straightforward approach to simultaneously label CMs and capillaries, presenting fewer challenges in background staining. However, subsequent image analysis always requires manual work in identifying and segmenting CMs and capillaries. Here, we developed an image analysis tool, AutoQC, to automatically identify and segment CMs and capillaries in immunofluorescence images of collagen type IV, a predominant basement membrane protein within the myocardium. In addition, commonly used capillarization-related measurements can be derived from segmentation masks. AutoQC features a weakly supervised instance segmentation algorithm by leveraging the power of a pre-trained segmentation model via prompt engineering. AutoQC outperformed YOLOv8-Seg, a state-of-the-art instance segmentation model, in both instance segmentation and capillarization assessment. Furthermore, the training of AutoQC required only a small dataset with bounding box annotations instead of pixel-wise annotations, leading to a reduced workload during network training. AutoQC provides an automated solution for quantifying cardiac capillarization in basement-membrane-immunostained myocardial slices, eliminating the need for manual image analysis once it is trained.

Codefuse, Ling Team, Wenting Cai et al.

Recent advancements in code large language models (LLMs) have demonstrated remarkable capabilities in code generation and understanding. It is still challenging to build a code LLM with comprehensive performance yet ultimate efficiency. Many attempts have been released in the open source community to break the trade-off between performance and efficiency, such as the Qwen Coder series and the DeepSeek Coder series. This paper introduces yet another attempt in this area, namely Ling-Coder-Lite. We leverage the efficient Mixture-of-Experts (MoE) architecture along with a set of high-quality data curation methods (especially those based on program analytics) to build an efficient yet powerful code LLM. Ling-Coder-Lite exhibits on-par performance on 12 representative coding benchmarks compared to state-of-the-art models of similar size, such as Qwen2.5-Coder-7B and DeepSeek-Coder-V2-Lite, while offering competitive latency and throughput. In practice, we achieve a 50\% reduction in deployment resources compared to the similar-sized dense model without performance loss. To facilitate further research and development in this area, we open-source our models as well as a substantial portion of high-quality data for the annealing and post-training stages. The models and data can be accessed at~\url{https://huggingface.co/inclusionAI/Ling-Coder-lite}.

Yan Weng, Fengbin Zhu, Tong Ye et al.

Retrieval-Augmented Generation (RAG), which integrates external knowledge into Large Language Models (LLMs), has proven effective in enabling LLMs to produce more accurate and reliable responses. However, it remains a significant challenge how to effectively integrate external retrieved knowledge with internal parametric knowledge in LLMs. In this work, we propose a novel Self-Selection RAG framework, where the LLM is made to select from pairwise responses generated with internal parametric knowledge solely and with external retrieved knowledge together to achieve enhanced accuracy. To this end, we devise a Self-Selection-RGP method to enhance the capabilities of the LLM in both generating and selecting the correct answer, by training the LLM with Direct Preference Optimization (DPO) over a curated Retrieval Generation Preference (RGP) dataset. Experimental results with two open-source LLMs (i.e., Llama2-13B-Chat and Mistral-7B) well demonstrate the superiority of our approach over other baseline methods on Natural Questions (NQ) and TrivialQA datasets.

Tong Ye, Weigang Huang, Xuhong Zhang et al.

Large Language Models (LLMs), particularly Code LLMs, have demonstrated impressive performance in code generation. Current research primarily focuses on the correctness of generated code, while efficiency remains less explored. Recent works have focused on modifying the initial version of the code to improve its efficiency. However, such refinements are limited by the algorithmic design and overall logic of the initial code, resulting in only incremental improvements. In contrast, when human developers write high-quality code, they typically begin by designing several potential solutions at the logical level, evaluating various algorithms and their complexities, and then proceeding to implement and optimize the solution. In this study, we introduce \tool: \uline{L}arge \uline{L}anguage \uline{M}odel for Code \uline{Effi}ciency, a novel framework that enables LLMs to generate code that balances both efficiency and correctness. Specifically, \tool divides the efficiency optimization process into two domains: algorithmic exploration in the logic domain and implementation optimization in the code domain. The correctness of the code is then guaranteed through a synthetic test case refinement process. This approach, which prioritizes efficiency before ensuring correctness, offers a new paradigm for efficient code generation. Experiments demonstrate that \tool consistently improves both efficiency and correctness, achieving new state-of-the-art performance in code efficiency benchmarks across various LLM backbones.

Jiahui Xiang, Tong Ye, Peiyu Liu et al.

Modelica is a widely adopted language for simulating complex physical systems, yet effective model creation and optimization require substantial domain expertise. Although large language models (LLMs) have demonstrated promising capabilities in code generation, their application to modeling remains largely unexplored. To address this gap, we have developed benchmark datasets specifically designed to evaluate the performance of LLMs in generating Modelica component models and test cases. Our evaluation reveals substantial limitations in current LLMs, as the generated code often fails to simulate successfully. To overcome these challenges, we propose a specialized workflow that integrates supervised fine-tuning, graph retrieval-augmented generation, and feedback optimization to improve the accuracy and reliability of Modelica code generation. The evaluation results demonstrate significant performance gains: the maximum improvement in pass@1 reached 0.3349 for the component generation task and 0.2457 for the test case generation task. This research underscores the potential of LLMs to advance intelligent modeling tools and offers valuable insights for future developments in system modeling and engineering applications.

Xiwen Chen, Hao Wang, Zhao Zhang et al.

Untrained Physics-based Deep Learning (DL) methods for digital holography have gained significant attention due to their benefits, such as not requiring an annotated training dataset, and providing interpretability since utilizing the governing laws of hologram formation. However, they are sensitive to the hard-to-obtain precise object distance from the imaging plane, posing the $\textit{Autofocusing}$ challenge. Conventional solutions involve reconstructing image stacks for different potential distances and applying focus metrics to select the best results, which apparently is computationally inefficient. In contrast, recently developed DL-based methods treat it as a supervised task, which again needs annotated data and lacks generalizability. To address this issue, we propose $\textit{reverse-attention loss}$, a weighted sum of losses for all possible candidates with learnable weights. This is a pioneering approach to addressing the Autofocusing challenge in untrained deep-learning methods. Both theoretical analysis and experiments demonstrate its superiority in efficiency and accuracy. Interestingly, our method presents a significant reconstruction performance over rival methods (i.e. alternating descent-like optimization, non-weighted loss integration, and random distance assignment) and even is almost equal to that achieved with a precisely known object distance. For example, the difference is less than 1dB in PSNR and 0.002 in SSIM for the target sample in our experiment.

Congyi Fan, Jian Guan, Xuanjia Zhao et al.

Automatically generating natural, diverse and rhythmic human dance movements driven by music is vital for virtual reality and film industries. However, generating dance that naturally follows music remains a challenge, as existing methods lack proper beat alignment and exhibit unnatural motion dynamics. In this paper, we propose Danceba, a novel framework that leverages gating mechanism to enhance rhythm-aware feature representation for music-driven dance generation, which achieves highly aligned dance poses with enhanced rhythmic sensitivity. Specifically, we introduce Phase-Based Rhythm Extraction (PRE) to precisely extract rhythmic information from musical phase data, capitalizing on the intrinsic periodicity and temporal structures of music. Additionally, we propose Temporal-Gated Causal Attention (TGCA) to focus on global rhythmic features, ensuring that dance movements closely follow the musical rhythm. We also introduce Parallel Mamba Motion Modeling (PMMM) architecture to separately model upper and lower body motions along with musical features, thereby improving the naturalness and diversity of generated dance movements. Extensive experiments confirm that Danceba outperforms state-of-the-art methods, achieving significantly better rhythmic alignment and motion diversity. Project page: https://danceba.github.io/ .

Tong Ye, Tengfei Ma, Xuhong Zhang et al.

Large Language Models (LLMs) have shown remarkable capabilities in solving various programming tasks, such as code generation. However, their potential for code optimization, particularly in performance enhancement, remains largely unexplored. This paper investigates the capabilities of LLMs in optimizing code for minimal execution time, addressing a critical gap in current research. The recently proposed code optimization methods construct program optimization pairs based on iterative submissions from the same programmer for the same problem. However, this approach confines LLMs to local performance improvements, neglecting global algorithmic innovation. To overcome this limitation, we adopt a completely different perspective by reconstructing the optimization pairs into a problem-oriented approach. This allows for the integration of various ideas from multiple programmers tackling the same problem. Furthermore, we observe that code optimization presents greater challenges compared to code generation, often accompanied by "optimization tax". Recognizing the inherent trade-offs in correctness and efficiency, we introduce a novel anchor verification framework to mitigate this "optimization tax". Ultimately, the problem oriented perspective combined with the anchor verification framework significantly enhances both the correct optimization ratio and speedup to new levels.

Tong Ye, Lingfei Wu, Tengfei Ma et al.

Automatically generating human-readable text describing the functionality of a program is the intent of source code summarization. Although neural language models achieve significant performance in this field, they are limited by their inability to access external knowledge. To address this limitation, an emerging trend is combining neural models with external knowledge through retrieval methods. Previous methods have relied on the sentence-level retrieval paradigm on the encoder side. However, this paradigm is coarse-grained, noise-filled and cannot directly take advantage of the high-quality retrieved summary tokens on the decoder side. In this paper, we propose a fine-grained Token-level retrieval-augmented mechanism (Tram) on the decoder side rather than the encoder side to enhance the performance of neural models and produce more low-frequency tokens in generating summaries. Furthermore, to overcome the challenge of token-level retrieval in capturing contextual code semantics, we also propose integrating code semantics into individual summary tokens. The results of extensive experiments and human evaluation show that our token-level retrieval-augmented approach significantly improves performance and is more interpretable.

Tong Ye, Shijing Si, Jianzong Wang et al.

The visual dialog task attempts to train an agent to answer multi-turn questions given an image, which requires the deep understanding of interactions between the image and dialog history. Existing researches tend to employ the modality-specific modules to model the interactions, which might be troublesome to use. To fill in this gap, we propose a unified framework for image-text joint embedding, named VU-BERT, and apply patch projection to obtain vision embedding firstly in visual dialog tasks to simplify the model. The model is trained over two tasks: masked language modeling and next utterance retrieval. These tasks help in learning visual concepts, utterances dependence, and the relationships between these two modalities. Finally, our VU-BERT achieves competitive performance (0.7287 NDCG scores) on VisDial v1.0 Datasets.

Xiaoyi Zhou, Liang Huang, Tong Ye et al.

This paper investigates an unmanned aerial vehicle (UAV)-assisted wireless powered mobile-edge computing (MEC) system, where the UAV powers the mobile terminals by wireless power transfer (WPT) and provides computation service for them. We aim to maximize the computation rate of terminals while ensuring fairness among them. Considering the random trajectories of mobile terminals, we propose a soft actor-critic (SAC)-based UAV trajectory planning and resource allocation (SAC-TR) algorithm, which combines off-policy and maximum entropy reinforcement learning to promote the convergence of the algorithm. We design the reward as a heterogeneous function of computation rate, fairness, and reaching of destination. Simulation results show that SAC-TR can quickly adapt to varying network environments and outperform representative benchmarks in a variety of situations.