Zhongliang Zhou

Jielu Zhang, Zhongliang Zhou, Gengchen Mai et al.

Remote sensing imagery has attracted significant attention in recent years due to its instrumental role in global environmental monitoring, land usage monitoring, and more. As image databases grow each year, performing automatic segmentation with deep learning models has gradually become the standard approach for processing the data. Despite the improved performance of current models, certain limitations remain unresolved. Firstly, training deep learning models for segmentation requires per-pixel annotations. Given the large size of datasets, only a small portion is fully annotated and ready for training. Additionally, the high intra-dataset variance in remote sensing data limits the transfer learning ability of such models. Although recently proposed generic segmentation models like SAM have shown promising results in zero-shot instance-level segmentation, adapting them to semantic segmentation is a non-trivial task. To tackle these challenges, we propose a novel method named Text2Seg for remote sensing semantic segmentation. Text2Seg overcomes the dependency on extensive annotations by employing an automatic prompt generation process using different visual foundation models (VFMs), which are trained to understand semantic information in various ways. This approach not only reduces the need for fully annotated datasets but also enhances the model's ability to generalize across diverse datasets. Evaluations on four widely adopted remote sensing datasets demonstrate that Text2Seg significantly improves zero-shot prediction performance compared to the vanilla SAM model, with relative improvements ranging from 31% to 225%. Our code is available at https://github.com/Douglas2Code/Text2Seg.

Zhongliang Zhou, Jielu Zhang, Zihan Guan et al.

Geolocating precise locations from images presents a challenging problem in computer vision and information retrieval.Traditional methods typically employ either classification, which dividing the Earth surface into grid cells and classifying images accordingly, or retrieval, which identifying locations by matching images with a database of image-location pairs. However, classification-based approaches are limited by the cell size and cannot yield precise predictions, while retrieval-based systems usually suffer from poor search quality and inadequate coverage of the global landscape at varied scale and aggregation levels. To overcome these drawbacks, we present Img2Loc, a novel system that redefines image geolocalization as a text generation task. This is achieved using cutting-edge large multi-modality models like GPT4V or LLaVA with retrieval augmented generation. Img2Loc first employs CLIP-based representations to generate an image-based coordinate query database. It then uniquely combines query results with images itself, forming elaborate prompts customized for LMMs. When tested on benchmark datasets such as Im2GPS3k and YFCC4k, Img2Loc not only surpasses the performance of previous state-of-the-art models but does so without any model training.

Zhongliang Zhou, Mengxuan Hu, Mariah Salcedo et al.

Artificial intelligence (AI), particularly machine learning and deep learning models, has significantly impacted bioinformatics research by offering powerful tools for analyzing complex biological data. However, the lack of interpretability and transparency of these models presents challenges in leveraging these models for deeper biological insights and for generating testable hypotheses. Explainable AI (XAI) has emerged as a promising solution to enhance the transparency and interpretability of AI models in bioinformatics. This review provides a comprehensive analysis of various XAI techniques and their applications across various bioinformatics domains including DNA, RNA, and protein sequence analysis, structural analysis, gene expression and genome analysis, and bioimaging analysis. We introduce the most pertinent machine learning and XAI methods, then discuss their diverse applications and address the current limitations of available XAI tools. By offering insights into XAI's potential and challenges, this review aims to facilitate its practical implementation in bioinformatics research and help researchers navigate the landscape of XAI tools.

Zhangyu Wang, Zeping Liu, Jielu Zhang et al.

Image geolocalization is a fundamental yet challenging task, aiming at inferring the geolocation on Earth where an image is taken. State-of-the-art methods employ either grid-based classification or gallery-based image-location retrieval, whose spatial generalizability significantly suffers if the spatial distribution of test images does not align with the choices of grids and galleries. Recently emerging generative approaches, while getting rid of grids and galleries, use raw geographical coordinates and suffer quality losses due to their lack of multi-scale information. To address these limitations, we propose a multi-scale latent diffusion model called LocDiff for image geolocalization. We developed a novel positional encoding-decoding framework called Spherical Harmonics Dirac Delta (SHDD) Representations, which encodes points on a spherical surface (e.g., geolocations on Earth) into a Hilbert space of Spherical Harmonics coefficients and decodes points (geolocations) by mode-seeking on spherical probability distributions. We also propose a novel SirenNet-based architecture (CS-UNet) to learn an image-based conditional backward process in the latent SHDD space by minimizing a latent KL-divergence loss. To the best of our knowledge, LocDiff is the first image geolocalization model that performs latent diffusion in a multi-scale location encoding space and generates geolocations under the guidance of images. Experimental results show that LocDiff can outperform all state-of-the-art grid-based, retrieval-based, and diffusion-based baselines across 5 challenging global-scale image geolocalization datasets, and demonstrates significantly stronger generalizability to unseen geolocations.

Zihan Guan, Mengxuan Hu, Zhongliang Zhou et al.

Recently, the Segment Anything Model (SAM) has gained significant attention as an image segmentation foundation model due to its strong performance on various downstream tasks. However, it has been found that SAM does not always perform satisfactorily when faced with challenging downstream tasks. This has led downstream users to demand a customized SAM model that can be adapted to these downstream tasks. In this paper, we present BadSAM, the first backdoor attack on the image segmentation foundation model. Our preliminary experiments on the CAMO dataset demonstrate the effectiveness of BadSAM.