Kirill Vishniakov

Zhiqiu Xu, Yanjie Chen, Kirill Vishniakov et al.

Weight initialization plays an important role in neural network training. Widely used initialization methods are proposed and evaluated for networks that are trained from scratch. However, the growing number of pretrained models now offers new opportunities for tackling this classical problem of weight initialization. In this work, we introduce weight selection, a method for initializing smaller models by selecting a subset of weights from a pretrained larger model. This enables the transfer of knowledge from pretrained weights to smaller models. Our experiments demonstrate that weight selection can significantly enhance the performance of small models and reduce their training time. Notably, it can also be used together with knowledge distillation. Weight selection offers a new approach to leverage the power of pretrained models in resource-constrained settings, and we hope it can be a useful tool for training small models in the large-model era. Code is available at https://github.com/OscarXZQ/weight-selection.

Kirill Vishniakov, Zhiqiang Shen, Zhuang Liu

Modern computer vision offers a great variety of models to practitioners, and selecting a model from multiple options for specific applications can be challenging. Conventionally, competing model architectures and training protocols are compared by their classification accuracy on ImageNet. However, this single metric does not fully capture performance nuances critical for specialized tasks. In this work, we conduct an in-depth comparative analysis of model behaviors beyond ImageNet accuracy, for both ConvNet and Vision Transformer architectures, each across supervised and CLIP training paradigms. Although our selected models have similar ImageNet accuracies and compute requirements, we find that they differ in many other aspects: types of mistakes, output calibration, transferability, and feature invariance, among others. This diversity in model characteristics, not captured by traditional metrics, highlights the need for more nuanced analysis when choosing among different models. Our code is available at https://github.com/kirill-vish/Beyond-INet.

Kirill Vishniakov, Eric Xing, Zhiqiang Shen

The recent progress in self-supervised learning has successfully combined Masked Image Modeling (MIM) with Siamese Networks, harnessing the strengths of both methodologies. Nonetheless, certain challenges persist when integrating conventional erase-based masking within Siamese ConvNets. Two primary concerns are: (1) The continuous data processing nature of ConvNets, which doesn't allow for the exclusion of non-informative masked regions, leading to reduced training efficiency compared to ViT architecture; (2) The misalignment between erase-based masking and the contrastive-based objective, distinguishing it from the MIM technique. To address these challenges, this work introduces a novel filling-based masking approach, termed \textbf{MixMask}. The proposed method replaces erased areas with content from a different image, effectively countering the information depletion seen in traditional masking methods. Additionally, we unveil an adaptive loss function that captures the semantics of the newly patched views, ensuring seamless integration within the architectural framework. We empirically validate the effectiveness of our approach through comprehensive experiments across various datasets and application scenarios. The findings underscore our framework's enhanced performance in areas such as linear probing, semi-supervised and supervised finetuning, object detection and segmentation. Notably, our method surpasses the MSCN, establishing MixMask as a more advantageous masking solution for Siamese ConvNets. Our code and models are publicly available at https://github.com/kirill-vish/MixMask.

Kirill Vishniakov, Boulbaba Ben Amor, Engin Tekin et al.

We introduce Gene42, a novel family of Genomic Foundation Models (GFMs) designed to manage context lengths of up to 192,000 base pairs (bp) at a single-nucleotide resolution. Gene42 models utilize a decoder-only (LLaMA-style) architecture with a dense self-attention mechanism. Initially trained on fixed-length sequences of 4,096 bp, our models underwent continuous pretraining to extend the context length to 192,000 bp. This iterative extension allowed for the comprehensive processing of large-scale genomic data and the capture of intricate patterns and dependencies within the human genome. Gene42 is the first dense attention model capable of handling such extensive long context lengths in genomics, challenging state-space models that often rely on convolutional operators among other mechanisms. Our pretrained models exhibit notably low perplexity values and high reconstruction accuracy, highlighting their strong ability to model genomic data. Extensive experiments on various genomic benchmarks have demonstrated state-of-the-art performance across multiple tasks, including biotype classification, regulatory region identification, chromatin profiling prediction, variant pathogenicity prediction, and species classification. The models are publicly available at huggingface.co/inceptionai.