Zhiqi Ma

Aihua Zheng, Xianpeng Zhu, Zhiqi Ma et al.

To tackle the challenge of vehicle re-identification (Re-ID) in complex lighting environments and diverse scenes, multi-spectral sources like visible and infrared information are taken into consideration due to their excellent complementary advantages. However, multi-spectral vehicle Re-ID suffers cross-modality discrepancy caused by heterogeneous properties of different modalities as well as a big challenge of the diverse appearance with different views in each identity. Meanwhile, diverse environmental interference leads to heavy sample distributional discrepancy in each modality. In this work, we propose a novel cross-directional consistency network to simultaneously overcome the discrepancies from both modality and sample aspects. In particular, we design a new cross-directional center loss to pull the modality centers of each identity close to mitigate cross-modality discrepancy, while the sample centers of each identity close to alleviate the sample discrepancy. Such strategy can generate discriminative multi-spectral feature representations for vehicle Re-ID. In addition, we design an adaptive layer normalization unit to dynamically adjust individual feature distribution to handle distributional discrepancy of intra-modality features for robust learning. To provide a comprehensive evaluation platform, we create a high-quality RGB-NIR-TIR multi-spectral vehicle Re-ID benchmark (MSVR310), including 310 different vehicles from a broad range of viewpoints, time spans and environmental complexities. Comprehensive experiments on both created and public datasets demonstrate the effectiveness of the proposed approach comparing to the state-of-the-art methods.

Xinlei Huang, Zhiqi Ma, Dian Meng et al.

Spatial multi-modal omics technology, highlighted by Nature Methods as an advanced biological technique in 2023, plays a critical role in resolving biological regulatory processes with spatial context. Recently, graph neural networks based on K-nearest neighbor (KNN) graphs have gained prominence in spatial multi-modal omics methods due to their ability to model semantic relations between sequencing spots. However, the fixed KNN graph fails to capture the latent semantic relations hidden by the inevitable data perturbations during the biological sequencing process, resulting in the loss of semantic information. In addition, the common lack of spot annotation and class number priors in practice further hinders the optimization of spatial multi-modal omics models. Here, we propose a novel spatial multi-modal omics resolved framework, termed PRototype-Aware Graph Adaptative Aggregation for Spatial Multi-modal Omics Analysis (PRAGA). PRAGA constructs a dynamic graph to capture latent semantic relations and comprehensively integrate spatial information and feature semantics. The learnable graph structure can also denoise perturbations by learning cross-modal knowledge. Moreover, a dynamic prototype contrastive learning is proposed based on the dynamic adaptability of Bayesian Gaussian Mixture Models to optimize the multi-modal omics representations for unknown biological priors. Quantitative and qualitative experiments on simulated and real datasets with 7 competing methods demonstrate the superior performance of PRAGA. Code is available at https://github.com/Xubin-s-Lab/PRAGA.

Beilei Cui, Long Bai, Mobarakol Islam et al.

Accurate 3D scene reconstruction is essential for numerous medical tasks. Given the challenges in obtaining ground truth data, there has been an increasing focus on self-supervised learning (SSL) for endoscopic depth estimation as a basis for scene reconstruction. While foundation models have shown remarkable progress in visual tasks, their direct application to the medical domain often leads to suboptimal results. However, the visual features from these models can still enhance endoscopic tasks, emphasizing the need for efficient adaptation strategies, which still lack exploration currently. In this paper, we introduce Endo3DAC, a unified framework for endoscopic scene reconstruction that efficiently adapts foundation models. We design an integrated network capable of simultaneously estimating depth maps, relative poses, and camera intrinsic parameters. By freezing the backbone foundation model and training only the specially designed Gated Dynamic Vector-Based Low-Rank Adaptation (GDV-LoRA) with separate decoder heads, Endo3DAC achieves superior depth and pose estimation while maintaining training efficiency. Additionally, we propose a 3D scene reconstruction pipeline that optimizes depth maps' scales, shifts, and a few parameters based on our integrated network. Extensive experiments across four endoscopic datasets demonstrate that Endo3DAC significantly outperforms other state-of-the-art methods while requiring fewer trainable parameters. To our knowledge, we are the first to utilize a single network that only requires surgical videos to perform both SSL depth estimation and scene reconstruction tasks. The code will be released upon acceptance.

Zengzhu Guo, Zhiqi Ma

Peptides are biomolecules comprised of amino acids that play an important role in our body. In recent years, peptides have received extensive attention in drug design and synthesis, and peptide prediction tasks help us better search for functional peptides. Typically, we use the primary sequence and structural information of peptides for model encoding. However, recent studies have focused more on single-modal information (structure or sequence) for prediction without multi-modal approaches. We found that single-modal models are not good at handling datasets with less information in that particular modality. Therefore, this paper proposes the M2oE multi-modal collaborative expert peptide model. Based on previous work, by integrating sequence and spatial structural information, employing expert model and Cross-Attention Mechanism, the model's capabilities are balanced and improved. Experimental results indicate that the M2oE model performs excellently in complex task predictions.

Aihua Zheng, Zhiqi Ma, Zi Wang et al.

Multi-spectral vehicle re-identification aims to address the challenge of identifying vehicles in complex lighting conditions by incorporating complementary visible and infrared information. However, in harsh environments, the discriminative cues in RGB and NIR modalities are often lost due to strong flares from vehicle lamps or sunlight, and existing multi-modal fusion methods are limited in their ability to recover these important cues. To address this problem, we propose a Flare-Aware Cross-modal Enhancement Network that adaptively restores flare-corrupted RGB and NIR features with guidance from the flare-immunized thermal infrared spectrum. First, to reduce the influence of locally degraded appearance due to intense flare, we propose a Mutual Flare Mask Prediction module to jointly obtain flare-corrupted masks in RGB and NIR modalities in a self-supervised manner. Second, to use the flare-immunized TI information to enhance the masked RGB and NIR, we propose a Flare-Aware Cross-modal Enhancement module that adaptively guides feature extraction of masked RGB and NIR spectra with prior flare-immunized knowledge from the TI spectrum. Third, to extract common informative semantic information from RGB and NIR, we propose an Inter-modality Consistency loss that enforces semantic consistency between the two modalities. Finally, to evaluate the proposed FACENet in handling intense flare, we introduce a new multi-spectral vehicle re-ID dataset, called WMVEID863, with additional challenges such as motion blur, significant background changes, and particularly intense flare degradation. Comprehensive experiments on both the newly collected dataset and public benchmark multi-spectral vehicle re-ID datasets demonstrate the superior performance of the proposed FACENet compared to state-of-the-art methods, especially in handling strong flares. The code and dataset will be released at this link.