S M Rayeed

Fangxun Liu, S M Rayeed, Samuel Stevens et al.

In entomology and ecology research, biologists often need to collect a large number of insects, among which beetles are the most common species. A common practice for biologists to organize beetles is to place them on trays and take a picture of each tray. Given the images of thousands of such trays, it is important to have an automated pipeline to process the large-scale data for further research. Therefore, we develop a 3-stage pipeline to detect all the beetles on each tray, sort and crop the image of each beetle, and do morphological segmentation on the cropped beetles. For detection, we design an iterative process utilizing a transformer-based open-vocabulary object detector and a vision-language model. For segmentation, we manually labeled 670 beetle images and fine-tuned two variants of a transformer-based segmentation model to achieve fine-grained segmentation of beetles with relatively high accuracy. The pipeline integrates multiple deep learning methods and is specialized for beetle image processing, which can greatly improve the efficiency to process large-scale beetle data and accelerate biological research.

Alyson East, Elizabeth G. Campolongo, Luke Meyers et al.

1) Biological collections house millions of specimens with digital images increasingly available through open-access platforms. However, most imaging protocols were developed for human interpretation without considering automated analysis requirements. As computer vision applications revolutionize taxonomic identification and trait extraction, a critical gap exists between current digitization practices and computational analysis needs. This review provides the first comprehensive practical framework for optimizing biological specimen imaging for computer vision applications. 2) Through interdisciplinary collaboration between taxonomists, collection managers, ecologists, and computer scientists, we synthesized evidence-based recommendations addressing fundamental computer vision concepts and practical imaging considerations. We provide immediately actionable implementation guidance while identifying critical areas requiring community standards development. 3) Our framework encompasses ten interconnected considerations for optimizing image capture for computer vision-powered taxonomic identification and trait extraction. We translate these into practical implementation checklists, equipment selection guidelines, and a roadmap for community standards development including filename conventions, pixel density requirements, and cross-institutional protocols. 4)By bridging biological and computational disciplines, this approach unlocks automated analysis potential for millions of existing specimens and guides future digitization efforts toward unprecedented analytical capabilities.

Samuel Stevens, S M Rayeed, Jenna Kline

The practical application of AI tools for specific computer vision tasks relies on the "small-data regime" of hundreds to thousands of labeled samples. This small-data regime is vital for applications requiring expensive expert annotations, such as ecological monitoring, medical diagnostics or industrial quality control. We find, however, that computer vision research has ignored the small data regime as evaluations increasingly focus on zero- and few-shot learning. We use the Natural World Tasks (NeWT) benchmark to compare multi-modal large language models (MLLMs) and vision-only methods across varying training set sizes. MLLMs exhibit early performance plateaus, while vision-only methods improve throughout the small-data regime, with performance gaps widening beyond 10 training examples. We provide the first comprehensive comparison between these approaches in small-data contexts and advocate for explicit small-data evaluations in AI research to better bridge theoretical advances with practical deployments.