Steven Dillmann

Xiangyi Li, Wenbo Chen, Yimin Liu et al. · berkeley

Agent Skills are structured packages of procedural knowledge that augment LLM agents at inference time. Despite rapid adoption, there is no standard way to measure whether they actually help. We present SkillsBench, a benchmark of 86 tasks across 11 domains paired with curated Skills and deterministic verifiers. Each task is evaluated under three conditions: no Skills, curated Skills, and self-generated Skills. We test 7 agent-model configurations over 7,308 trajectories. Curated Skills raise average pass rate by 16.2 percentage points(pp), but effects vary widely by domain (+4.5pp for Software Engineering to +51.9pp for Healthcare) and 16 of 84 tasks show negative deltas. Self-generated Skills provide no benefit on average, showing that models cannot reliably author the procedural knowledge they benefit from consuming. Focused Skills with 2--3 modules outperform comprehensive documentation, and smaller models with Skills can match larger models without them.

Kyle Waters, Lucas Nuzzi, Tadhg Looram et al.

AI agents hold growing promise for accelerating scientific discovery; yet, a lack of frontier evaluations hinders adoption into real workflows. Expert-written benchmarks have proven effective at measuring AI reasoning, but most at this stage have become saturated and only measure performance on constrained outputs. To help address this gap, we introduce COMPOSITE-STEM, a benchmark of 70 expert-written tasks in physics, biology, chemistry, and mathematics, curated by doctoral-level researchers. Our benchmark combines exact-match grading and criterion-based rubrics with an LLM-as-a-jury grading protocol, allowing more flexible assessment of scientifically meaningful outputs. Using an adapted multimodal Terminus-2 agent harness within the Harbor agentic evaluation framework, we evaluate four frontier models. The top-performing model achieves 21%, demonstrating that COMPOSITE-STEM captures capabilities beyond current agent reach. All tasks are open-sourced with contributor permission to support reproducibility and to promote additional research towards AI's acceleration of scientific progress in these domains.

LSST Dark Energy Science Collaboration, Eric Aubourg, Camille Avestruz et al.

The Vera C. Rubin Observatory's Legacy Survey of Space and Time (LSST) will produce unprecedented volumes of heterogeneous astronomical data (images, catalogs, and alerts) that challenge traditional analysis pipelines. The LSST Dark Energy Science Collaboration (DESC) aims to derive robust constraints on dark energy and dark matter from these data, requiring methods that are statistically powerful, scalable, and operationally reliable. Artificial intelligence and machine learning (AI/ML) are already embedded across DESC science workflows, from photometric redshifts and transient classification to weak lensing inference and cosmological simulations. Yet their utility for precision cosmology hinges on trustworthy uncertainty quantification, robustness to covariate shift and model misspecification, and reproducible integration within scientific pipelines. This white paper surveys the current landscape of AI/ML across DESC's primary cosmological probes and cross-cutting analyses, revealing that the same core methodologies and fundamental challenges recur across disparate science cases. Since progress on these cross-cutting challenges would benefit multiple probes simultaneously, we identify key methodological research priorities, including Bayesian inference at scale, physics-informed methods, validation frameworks, and active learning for discovery. With an eye on emerging techniques, we also explore the potential of the latest foundation model methodologies and LLM-driven agentic AI systems to reshape DESC workflows, provided their deployment is coupled with rigorous evaluation and governance. Finally, we discuss critical software, computing, data infrastructure, and human capital requirements for the successful deployment of these new methodologies, and consider associated risks and opportunities for broader coordination with external actors.

Tadhg Looram, Lucas Nuzzi, Kyle Waters et al.

Much of the focus in RL today is on evaluation design: building meaningful evals that serve simultaneously as benchmarks and as well-defined reward signals for post-training. Yet, many real-world tasks are governed by subjective, procedural, and domain-specific requirements that are difficult to encode as exact-match targets or open-ended preference judgments frequently used in RL pipelines today. In this work, we present AsymmetryZero, a framework for operationalizing human expert preferences as semantic evals. AsymmetryZero represents each task as a stable evaluation contract that makes grading criteria explicit: what is being graded, how each criterion is judged, and how criterion-level decisions are aggregated into a task outcome. The same contract can be executed using Inspect for model-only evaluations, as well as the Harbor Framework for agentic evaluations, enabling comparable scores and shared audit artifacts across both settings. We argue that the central challenge in post-training today is the faithful encoding of expert requirements into the evaluation itself. To that end, we present a study using Harbor that holds task contracts fixed and compares a five-model frontier jury against a five-model compact jury across four frontier-class solvers (Claude Opus 4.6, GPT-5.4, Grok-4.20, Gemini-3.1-Pro). We find that criterion-level frontier-vs-compact agreement ranges from $75.9\%$ to $89.6\%$ (strict common-subset agreement: $77.8\%$ to $92.1\%$), while compact juries exhibit substantially higher internal dissent (3--2 split rate $28.7\%$--$32.4\%$) than frontier juries ($6.1\%$--$11.5\%$). Verifier traces further show that compact juries reduce per-criterion judging cost to roughly $4.2\%$--$5.6\%$ of frontier and latency to roughly $21.7\%$--$27.1\%$, even as aggregated task-level outcomes often remain comparatively stable.

Steven Dillmann, Juan Rafael Martínez-Galarza, Roberto Soria et al.

We present a novel representation learning method for downstream tasks like anomaly detection, unsupervised classification, and similarity searches in high-energy data sets. This enabled the discovery of a new extragalactic fast X-ray transient (FXT) in Chandra archival data, XRT 200515, a needle-in-the-haystack event and the first Chandra FXT of its kind. Recent serendipitous discoveries in X-ray astronomy, including FXTs from binary neutron star mergers and an extragalactic planetary transit candidate, highlight the need for systematic transient searches in X-ray archives. We introduce new event file representations, E-t maps and E-t-dt cubes, that effectively encode both temporal and spectral information, enabling the seamless application of machine learning to variable-length event file time series. Our unsupervised learning approach employs PCA or sparse autoencoders to extract low-dimensional, informative features from these data representations, followed by clustering in the embedding space with DBSCAN. New transients are identified within transient-dominant clusters or through nearest-neighbour searches around known transients, producing a catalogue of 3559 candidates (3447 flares and 112 dips). XRT 200515 exhibits unique temporal and spectral variability, including an intense, hard <10s initial burst, followed by spectral softening in an ~800s oscillating tail. We interpret XRT 200515 as either the first giant magnetar flare observed at low X-ray energies or the first extragalactic Type I X-ray burst from a faint, previously unknown low-mass X-ray binary in the LMC. Our method extends to data sets from other observatories such as XMM-Newton, Swift-XRT, eROSITA, Einstein Probe, and upcoming missions like AXIS.

Elizabeth G. Campolongo, Yuan-Tang Chou, Ekaterina Govorkova et al.

Scientific discoveries are often made by finding a pattern or object that was not predicted by the known rules of science. Oftentimes, these anomalous events or objects that do not conform to the norms are an indication that the rules of science governing the data are incomplete, and something new needs to be present to explain these unexpected outliers. The challenge of finding anomalies can be confounding since it requires codifying a complete knowledge of the known scientific behaviors and then projecting these known behaviors on the data to look for deviations. When utilizing machine learning, this presents a particular challenge since we require that the model not only understands scientific data perfectly but also recognizes when the data is inconsistent and out of the scope of its trained behavior. In this paper, we present three datasets aimed at developing machine learning-based anomaly detection for disparate scientific domains covering astrophysics, genomics, and polar science. We present the different datasets along with a scheme to make machine learning challenges around the three datasets findable, accessible, interoperable, and reusable (FAIR). Furthermore, we present an approach that generalizes to future machine learning challenges, enabling the possibility of large, more compute-intensive challenges that can ultimately lead to scientific discovery.

Yanke Song, Victoria Ashley Villar, Juan Rafael Martinez-Galarza et al.

X-ray observing facilities, such as the Chandra X-ray Observatory and the eROSITA, have detected millions of astronomical sources associated with high-energy phenomena. The arrival of photons as a function of time follows a Poisson process and can vary by orders-of-magnitude, presenting obstacles for common tasks such as source classification, physical property derivation, and anomaly detection. Previous work has either failed to directly capture the Poisson nature of the data or only focuses on Poisson rate function reconstruction. In this work, we present Poisson Process AutoDecoder (PPAD). PPAD is a neural field decoder that maps fixed-length latent features to continuous Poisson rate functions across energy band and time via unsupervised learning. PPAD reconstructs the rate function and yields a representation at the same time. We demonstrate the efficacy of PPAD via reconstruction, regression, classification and anomaly detection experiments using the Chandra Source Catalog.

Christine Ye, Sihan Yuan, Suchetha Cooray et al.

Frontier AI agents show increasing promise as scientific research assistants, and may eventually be useful for extended, open-ended research workflows. However, in order to use agents for novel research, we must first assess the underlying faithfulness and correctness of their work. To evaluate agents as research assistants, we introduce ReplicationBench, an evaluation framework that tests whether agents can replicate entire research papers drawn from the astrophysics literature. Astrophysics, where research relies heavily on archival data and computational study while requiring little real-world experimentation, is a particularly useful testbed for AI agents in scientific research. We split each paper into tasks which require agents to replicate the paper's core contributions, including the experimental setup, derivations, data analysis, and codebase. Each task is co-developed with the original paper authors and targets a key scientific result, enabling objective evaluation of both faithfulness (adherence to original methods) and correctness (technical accuracy of results). ReplicationBench is extremely challenging for current frontier language models: even the best-performing language models score under 20%. We analyze ReplicationBench trajectories in collaboration with domain experts and find a rich, diverse set of failure modes for agents in scientific research. ReplicationBench establishes the first benchmark of paper-scale, expert-validated astrophysics research tasks, reveals insights about agent performance generalizable to other domains of data-driven science, and provides a scalable framework for measuring AI agents' reliability in scientific research.

Steven Dillmann, Juan Rafael Martínez-Galarza

Event time series are sequences of discrete events occurring at irregular time intervals, each associated with a domain-specific observational modality. They are common in domains such as high-energy astrophysics, computational social science, cybersecurity, finance, healthcare, neuroscience, and seismology. Their unstructured and irregular structure poses significant challenges for extracting meaningful patterns and identifying salient phenomena using conventional techniques. We propose novel two- and three-dimensional tensor representations for event time series, coupled with sparse autoencoders that learn physically meaningful latent representations. These embeddings support a variety of downstream tasks, including anomaly detection, similarity-based retrieval, semantic clustering, and unsupervised classification. We demonstrate our approach on a real-world dataset from X-ray astronomy, showing that these representations successfully capture temporal and spectral signatures and isolate diverse classes of X-ray transients. Our framework offers a flexible, scalable, and generalizable solution for analyzing complex, irregular event time series across scientific and industrial domains.