GeneMask: Fast Pretraining of Gene Sequences to Enable Few-Shot LearningSoumyadeep Roy, Jonas Wallat, Sowmya S Sundaram et al. · stanford
Large-scale language models such as DNABert and LOGO aim to learn optimal gene representations and are trained on the entire Human Reference Genome. However, standard tokenization schemes involve a simple sliding window of tokens like k-mers that do not leverage any gene-based semantics and thus may lead to (trivial) masking of easily predictable sequences and subsequently inefficient Masked Language Modeling (MLM) training. Therefore, we propose a novel masking algorithm, GeneMask, for MLM training of gene sequences, where we randomly identify positions in a gene sequence as mask centers and locally select the span around the mask center with the highest Normalized Pointwise Mutual Information (NPMI) to mask. We observe that in the absence of human-understandable semantics in the genomics domain (in contrast, semantic units like words and phrases are inherently available in NLP), GeneMask-based models substantially outperform the SOTA models (DNABert and LOGO) over four benchmark gene sequence classification datasets in five few-shot settings (10 to 1000-shot). More significantly, the GeneMask-based DNABert model is trained for less than one-tenth of the number of epochs of the original SOTA model. We also observe a strong correlation between top-ranked PMI tokens and conserved DNA sequence motifs, which may indicate the incorporation of latent genomic information. The codes (including trained models) and datasets are made publicly available at https://github.com/roysoumya/GeneMask.
4.8CLMar 31Code
LLM Probe: Evaluating LLMs for Low-Resource LanguagesHailay Kidu Teklehaymanot, Gebrearegawi Gebremariam, Wolfgang Nejdl
Despite rapid advances in large language models (LLMs), their linguistic abilities in low-resource and morphologically rich languages are still not well understood due to limited annotated resources and the absence of standardized evaluation frameworks. This paper presents LLM Probe, a lexicon-based assessment framework designed to systematically evaluate the linguistic skills of LLMs in low-resource language environments. The framework analyzes models across four areas of language understanding: lexical alignment, part-of-speech recognition, morphosyntactic probing, and translation accuracy. To illustrate the framework, we create a manually annotated benchmark dataset using a low-resource Semitic language as a case study. The dataset comprises bilingual lexicons with linguistic annotations, including part-of-speech tags, grammatical gender, and morphosyntactic features, which demonstrate high inter-annotator agreement to ensure reliable annotations. We test a variety of models, including causal language models and sequence-to-sequence architectures. The results reveal notable differences in performance across various linguistic tasks: sequence-to-sequence models generally excel in morphosyntactic analysis and translation quality, whereas causal models demonstrate strong performance in lexical alignment but exhibit weaker translation accuracy. Our results emphasize the need for linguistically grounded evaluation to better understand LLM limitations in low-resource settings. We release LLM Probe and the accompanying benchmark dataset as open-source tools to promote reproducible benchmarking and to support the development of more inclusive multilingual language technologies.
A Multi-task Model for Sentiment Aided Stance Detection of Climate Change TweetsApoorva Upadhyaya, Marco Fisichella, Wolfgang Nejdl
Climate change has become one of the biggest challenges of our time. Social media platforms such as Twitter play an important role in raising public awareness and spreading knowledge about the dangers of the current climate crisis. With the increasing number of campaigns and communication about climate change through social media, the information could create more awareness and reach the general public and policy makers. However, these Twitter communications lead to polarization of beliefs, opinion-dominated ideologies, and often a split into two communities of climate change deniers and believers. In this paper, we propose a framework that helps identify denier statements on Twitter and thus classifies the stance of the tweet into one of the two attitudes towards climate change (denier/believer). The sentimental aspects of Twitter data on climate change are deeply rooted in general public attitudes toward climate change. Therefore, our work focuses on learning two closely related tasks: Stance Detection and Sentiment Analysis of climate change tweets. We propose a multi-task framework that performs stance detection (primary task) and sentiment analysis (auxiliary task) simultaneously. The proposed model incorporates the feature-specific and shared-specific attention frameworks to fuse multiple features and learn the generalized features for both tasks. The experimental results show that the proposed framework increases the performance of the primary task, i.e., stance detection by benefiting from the auxiliary task, i.e., sentiment analysis compared to its uni-modal and single-task variants.
A Review of the Role of Causality in Developing Trustworthy AI SystemsNiloy Ganguly, Dren Fazlija, Maryam Badar et al.
State-of-the-art AI models largely lack an understanding of the cause-effect relationship that governs human understanding of the real world. Consequently, these models do not generalize to unseen data, often produce unfair results, and are difficult to interpret. This has led to efforts to improve the trustworthiness aspects of AI models. Recently, causal modeling and inference methods have emerged as powerful tools. This review aims to provide the reader with an overview of causal methods that have been developed to improve the trustworthiness of AI models. We hope that our contribution will motivate future research on causality-based solutions for trustworthy AI.
This Patient Looks Like That Patient: Prototypical Networks for Interpretable Diagnosis Prediction from Clinical TextBetty van Aken, Jens-Michalis Papaioannou, Marcel G. Naik et al.
The use of deep neural models for diagnosis prediction from clinical text has shown promising results. However, in clinical practice such models must not only be accurate, but provide doctors with interpretable and helpful results. We introduce ProtoPatient, a novel method based on prototypical networks and label-wise attention with both of these abilities. ProtoPatient makes predictions based on parts of the text that are similar to prototypical patients - providing justifications that doctors understand. We evaluate the model on two publicly available clinical datasets and show that it outperforms existing baselines. Quantitative and qualitative evaluations with medical doctors further demonstrate that the model provides valuable explanations for clinical decision support.
Efficient ECG-based Atrial Fibrillation Detection via Parameterised Hypercomplex Neural NetworksLeonie Basso, Zhao Ren, Wolfgang Nejdl
Atrial fibrillation (AF) is the most common cardiac arrhythmia and associated with a high risk for serious conditions like stroke. The use of wearable devices embedded with automatic and timely AF assessment from electrocardiograms (ECGs) has shown to be promising in preventing life-threatening situations. Although deep neural networks have demonstrated superiority in model performance, their use on wearable devices is limited by the trade-off between model performance and complexity. In this work, we propose to use lightweight convolutional neural networks (CNNs) with parameterised hypercomplex (PH) layers for AF detection based on ECGs. The proposed approach trains small-scale CNNs, thus overcoming the limited computing resources on wearable devices. We show comparable performance to corresponding real-valued CNNs on two publicly available ECG datasets using significantly fewer model parameters. PH models are more flexible than other hypercomplex neural networks and can operate on any number of input ECG leads.
1.8LGNov 9, 2022
Discrimination and Class Imbalance Aware Online Naive BayesMaryam Badar, Marco Fisichella, Vasileios Iosifidis et al.
Fairness-aware mining of massive data streams is a growing and challenging concern in the contemporary domain of machine learning. Many stream learning algorithms are used to replace humans at critical decision-making points e.g., hiring staff, assessing credit risk, etc. This calls for handling massive incoming information with minimum response delay while ensuring fair and high quality decisions. Recent discrimination-aware learning methods are optimized based on overall accuracy. However, the overall accuracy is biased in favor of the majority class; therefore, state-of-the-art methods mainly diminish discrimination by partially or completely ignoring the minority class. In this context, we propose a novel adaptation of Naïve Bayes to mitigate discrimination embedded in the streams while maintaining high predictive performance for both the majority and minority classes. Our proposed algorithm is simple, fast, and attains multi-objective optimization goals. To handle class imbalance and concept drifts, a dynamic instance weighting module is proposed, which gives more importance to recent instances and less importance to obsolete instances based on their membership in minority or majority class. We conducted experiments on a range of streaming and static datasets and deduced that our proposed methodology outperforms existing state-of-the-art fairness-aware methods in terms of both discrimination score and balanced accuracy.
4.2CLMar 19
Cross-Modal Rationale Transfer for Explainable Humanitarian Classification on Social MediaThi Huyen Nguyen, Koustav Rudra, Wolfgang Nejdl
Advances in social media data dissemination enable the provision of real-time information during a crisis. The information comes from different classes, such as infrastructure damages, persons missing or stranded in the affected zone, etc. Existing methods attempted to classify text and images into various humanitarian categories, but their decision-making process remains largely opaque, which affects their deployment in real-life applications. Recent work has sought to improve transparency by extracting textual rationales from tweets to explain predicted classes. However, such explainable classification methods have mostly focused on text, rather than crisis-related images. In this paper, we propose an interpretable-by-design multimodal classification framework. Our method first learns the joint representation of text and image using a visual language transformer model and extracts text rationales. Next, it extracts the image rationales via the mapping with text rationales. Our approach demonstrates how to learn rationales in one modality from another through cross-modal rationale transfer, which saves annotation effort. Finally, tweets are classified based on extracted rationales. Experiments are conducted over CrisisMMD benchmark dataset, and results show that our proposed method boosts the classification Macro-F1 by 2-35% while extracting accurate text tokens and image patches as rationales. Human evaluation also supports the claim that our proposed method is able to retrieve better image rationale patches (12%) that help to identify humanitarian classes. Our method adapts well to new, unseen datasets in zero-shot mode, achieving an accuracy of 80%.
3.9CLMar 23
LGSE: Lexically Grounded Subword Embedding Initialization for Low-Resource Language AdaptationHailay Teklehaymanot, Dren Fazlija, Wolfgang Nejdl
Adapting pretrained language models to low-resource, morphologically rich languages remains a significant challenge. Existing vocabulary expansion methods typically rely on arbitrarily segmented subword units, resulting in fragmented lexical representations and loss of critical morphological information. To address this limitation, we propose the Lexically Grounded Subword Embedding Initialization (LGSE) framework, which introduces morphologically informed segmentation for initializing embeddings of novel tokens. Instead of using random vectors or arbitrary subwords, LGSE decomposes words into their constituent morphemes and constructs semantically coherent embeddings by averaging pretrained subword or FastText-based morpheme representations. When a token cannot be segmented into meaningful morphemes, its embedding is constructed using character n-gram representations to capture structural information. During Language-Adaptive Pretraining, we apply a regularization term that penalizes large deviations of newly introduced embeddings from their initialized values, preserving alignment with the original pretrained embedding space while enabling adaptation to the target language. To isolate the effect of initialization, we retain the original pre-trained model vocabulary and tokenizer and update only the new embeddings during adaptation. We evaluate LGSE on three NLP tasks: Question Answering, Named Entity Recognition, and Text Classification, in two morphologically rich, low-resource languages: Amharic and Tigrinya, where morphological segmentation resources are available. Experimental results show that LGSE consistently outperforms baseline methods across all tasks, demonstrating the effectiveness of morphologically grounded embedding initialization for improving representation quality in underrepresented languages. Project resources are available in the GitHub link.
Beyond Accuracy: Investigating Error Types in GPT-4 Responses to USMLE QuestionsSoumyadeep Roy, Aparup Khatua, Fatemeh Ghoochani et al.
GPT-4 demonstrates high accuracy in medical QA tasks, leading with an accuracy of 86.70%, followed by Med-PaLM 2 at 86.50%. However, around 14% of errors remain. Additionally, current works use GPT-4 to only predict the correct option without providing any explanation and thus do not provide any insight into the thinking process and reasoning used by GPT-4 or other LLMs. Therefore, we introduce a new domain-specific error taxonomy derived from collaboration with medical students. Our GPT-4 USMLE Error (G4UE) dataset comprises 4153 GPT-4 correct responses and 919 incorrect responses to the United States Medical Licensing Examination (USMLE) respectively. These responses are quite long (258 words on average), containing detailed explanations from GPT-4 justifying the selected option. We then launch a large-scale annotation study using the Potato annotation platform and recruit 44 medical experts through Prolific, a well-known crowdsourcing platform. We annotated 300 out of these 919 incorrect data points at a granular level for different classes and created a multi-label span to identify the reasons behind the error. In our annotated dataset, a substantial portion of GPT-4's incorrect responses is categorized as a "Reasonable response by GPT-4," by annotators. This sheds light on the challenge of discerning explanations that may lead to incorrect options, even among trained medical professionals. We also provide medical concepts and medical semantic predications extracted using the SemRep tool for every data point. We believe that it will aid in evaluating the ability of LLMs to answer complex medical questions. We make the resources available at https://github.com/roysoumya/usmle-gpt4-error-taxonomy .
2.7CLNov 5, 2025
Towards Transparent Stance Detection: A Zero-Shot Approach Using Implicit and Explicit InterpretabilityApoorva Upadhyaya, Wolfgang Nejdl, Marco Fisichella
Zero-Shot Stance Detection (ZSSD) identifies the attitude of the post toward unseen targets. Existing research using contrastive, meta-learning, or data augmentation suffers from generalizability issues or lack of coherence between text and target. Recent works leveraging large language models (LLMs) for ZSSD focus either on improving unseen target-specific knowledge or generating explanations for stance analysis. However, most of these works are limited by their over-reliance on explicit reasoning, provide coarse explanations that lack nuance, and do not explicitly model the reasoning process, making it difficult to interpret the model's predictions. To address these issues, in our study, we develop a novel interpretable ZSSD framework, IRIS. We provide an interpretable understanding of the attitude of the input towards the target implicitly based on sequences within the text (implicit rationales) and explicitly based on linguistic measures (explicit rationales). IRIS considers stance detection as an information retrieval ranking task, understanding the relevance of implicit rationales for different stances to guide the model towards correct predictions without requiring the ground-truth of rationales, thus providing inherent interpretability. In addition, explicit rationales based on communicative features help decode the emotional and cognitive dimensions of stance, offering an interpretable understanding of the author's attitude towards the given target. Extensive experiments on the benchmark datasets of VAST, EZ-STANCE, P-Stance, and RFD using 50%, 30%, and even 10% training data prove the generalizability of our model, benefiting from the proposed architecture and interpretable design.
MoVoC: Morphology-Aware Subword Construction for Geez Script LanguagesHailay Kidu Teklehaymanot, Dren Fazlija, Wolfgang Nejdl
Subword-based tokenization methods often fail to preserve morphological boundaries, a limitation especially pronounced in low-resource, morphologically complex languages such as those written in the Geez script. To address this, we present MoVoC (Morpheme-aware Subword Vocabulary Construction) and train MoVoC-Tok, a tokenizer that integrates supervised morphological analysis into the subword vocabulary. This hybrid segmentation approach combines morpheme-based and Byte Pair Encoding (BPE) tokens to preserve morphological integrity while maintaining lexical meaning. To tackle resource scarcity, we curate and release manually annotated morpheme data for four Geez script languages and a morpheme-aware vocabulary for two of them. While the proposed tokenization method does not lead to significant gains in automatic translation quality, we observe consistent improvements in intrinsic metrics, MorphoScore, and Boundary Precision, highlighting the value of morphology-aware segmentation in enhancing linguistic fidelity and token efficiency. Our morpheme-annotated datasets and tokenizer will be publicly available to support further research in low-resource, morphologically rich languages. Our code and data are available on GitHub: https://github.com/hailaykidu/MoVoC
Membership Inference Attack on Graph Neural NetworksIyiola E. Olatunji, Wolfgang Nejdl, Megha Khosla
Graph Neural Networks (GNNs), which generalize traditional deep neural networks on graph data, have achieved state-of-the-art performance on several graph analytical tasks. We focus on how trained GNN models could leak information about the \emph{member} nodes that they were trained on. We introduce two realistic settings for performing a membership inference (MI) attack on GNNs. While choosing the simplest possible attack model that utilizes the posteriors of the trained model (black-box access), we thoroughly analyze the properties of GNNs and the datasets which dictate the differences in their robustness towards MI attack. While in traditional machine learning models, overfitting is considered the main cause of such leakage, we show that in GNNs the additional structural information is the major contributing factor. We support our findings by extensive experiments on four representative GNN models. To prevent MI attacks on GNN, we propose two effective defenses that significantly decreases the attacker's inference by up to 60% without degradation to the target model's performance. Our code is available at https://github.com/iyempissy/rebMIGraph.
7.6CVApr 19, 2024
ECOR: Explainable CLIP for Object RecognitionAli Rasekh, Sepehr Kazemi Ranjbar, Milad Heidari et al.
Large Vision Language Models (VLMs), such as CLIP, have significantly contributed to various computer vision tasks, including object recognition and object detection. Their open vocabulary feature enhances their value. However, their black-box nature and lack of explainability in predictions make them less trustworthy in critical domains. Recently, some work has been done to force VLMs to provide reasonable rationales for object recognition, but this often comes at the expense of classification accuracy. In this paper, we first propose a mathematical definition of explainability in the object recognition task based on the joint probability distribution of categories and rationales, then leverage this definition to fine-tune CLIP in an explainable manner. Through evaluations of different datasets, our method demonstrates state-of-the-art performance in explainable classification. Notably, it excels in zero-shot settings, showcasing its adaptability. This advancement improves explainable object recognition, enhancing trust across diverse applications. The code will be made available online upon publication.
3.6IVMay 24, 2024
Towards Precision Healthcare: Robust Fusion of Time Series and Image DataAli Rasekh, Reza Heidari, Amir Hosein Haji Mohammad Rezaie et al.
With the increasing availability of diverse data types, particularly images and time series data from medical experiments, there is a growing demand for techniques designed to combine various modalities of data effectively. Our motivation comes from the important areas of predicting mortality and phenotyping where using different modalities of data could significantly improve our ability to predict. To tackle this challenge, we introduce a new method that uses two separate encoders, one for each type of data, allowing the model to understand complex patterns in both visual and time-based information. Apart from the technical challenges, our goal is to make the predictive model more robust in noisy conditions and perform better than current methods. We also deal with imbalanced datasets and use an uncertainty loss function, yielding improved results while simultaneously providing a principled means of modeling uncertainty. Additionally, we include attention mechanisms to fuse different modalities, allowing the model to focus on what's important for each task. We tested our approach using the comprehensive multimodal MIMIC dataset, combining MIMIC-IV and MIMIC-CXR datasets. Our experiments show that our method is effective in improving multimodal deep learning for clinical applications. The code will be made available online.
4.2CLApr 26, 2024
TIGQA:An Expert Annotated Question Answering Dataset in TigrinyaHailay Teklehaymanot, Dren Fazlija, Niloy Ganguly et al.
The absence of explicitly tailored, accessible annotated datasets for educational purposes presents a notable obstacle for NLP tasks in languages with limited resources.This study initially explores the feasibility of using machine translation (MT) to convert an existing dataset into a Tigrinya dataset in SQuAD format. As a result, we present TIGQA, an expert annotated educational dataset consisting of 2.68K question-answer pairs covering 122 diverse topics such as climate, water, and traffic. These pairs are from 537 context paragraphs in publicly accessible Tigrinya and Biology books. Through comprehensive analyses, we demonstrate that the TIGQA dataset requires skills beyond simple word matching, requiring both single-sentence and multiple-sentence inference abilities. We conduct experiments using state-of-the art MRC methods, marking the first exploration of such models on TIGQA. Additionally, we estimate human performance on the dataset and juxtapose it with the results obtained from pretrained models.The notable disparities between human performance and best model performance underscore the potential for further enhancements to TIGQA through continued research. Our dataset is freely accessible via the provided link to encourage the research community to address the challenges in the Tigrinya MRC.
4.9CLSep 30, 2025
CliniBench: A Clinical Outcome Prediction Benchmark for Generative and Encoder-Based Language ModelsPaul Grundmann, Dennis Fast, Jan Frick et al.
With their growing capabilities, generative large language models (LLMs) are being increasingly investigated for complex medical tasks. However, their effectiveness in real-world clinical applications remains underexplored. To address this, we present CliniBench, the first benchmark that enables comparability of well-studied encoder-based classifiers and generative LLMs for discharge diagnosis prediction from admission notes in MIMIC-IV dataset. Our extensive study compares 12 generative LLMs and 3 encoder-based classifiers and demonstrates that encoder-based classifiers consistently outperform generative models in diagnosis prediction. We assess several retrieval augmentation strategies for in-context learning from similar patients and find that they provide notable performance improvements for generative LLMs.
Comply: Learning Sentences with Complex Weights inspired by Fruit Fly OlfactionAlexei Figueroa, Justus Westerhoff, Golzar Atefi et al.
Biologically inspired neural networks offer alternative avenues to model data distributions. FlyVec is a recent example that draws inspiration from the fruit fly's olfactory circuit to tackle the task of learning word embeddings. Surprisingly, this model performs competitively even against deep learning approaches specifically designed to encode text, and it does so with the highest degree of computational efficiency. We pose the question of whether this performance can be improved further. For this, we introduce Comply. By incorporating positional information through complex weights, we enable a single-layer neural network to learn sequence representations. Our experiments show that Comply not only supersedes FlyVec but also performs on par with significantly larger state-of-the-art models. We achieve this without additional parameters. Comply yields sparse contextual representations of sentences that can be interpreted explicitly from the neuron weights.
4.1LGFeb 2, 2025
Enhancing Offline Reinforcement Learning with Curriculum Learning-Based Trajectory ValuationAmir Abolfazli, Zekun Song, Avishek Anand et al.
The success of deep reinforcement learning (DRL) relies on the availability and quality of training data, often requiring extensive interactions with specific environments. In many real-world scenarios, where data collection is costly and risky, offline reinforcement learning (RL) offers a solution by utilizing data collected by domain experts and searching for a batch-constrained optimal policy. This approach is further augmented by incorporating external data sources, expanding the range and diversity of data collection possibilities. However, existing offline RL methods often struggle with challenges posed by non-matching data from these external sources. In this work, we specifically address the problem of source-target domain mismatch in scenarios involving mixed datasets, characterized by a predominance of source data generated from random or suboptimal policies and a limited amount of target data generated from higher-quality policies. To tackle this problem, we introduce Transition Scoring (TS), a novel method that assigns scores to transitions based on their similarity to the target domain, and propose Curriculum Learning-Based Trajectory Valuation (CLTV), which effectively leverages these transition scores to identify and prioritize high-quality trajectories through a curriculum learning approach. Our extensive experiments across various offline RL methods and MuJoCo environments, complemented by rigorous theoretical analysis, demonstrate that CLTV enhances the overall performance and transferability of policies learned by offline RL algorithms.
FlexTSF: A Flexible Forecasting Model for Time Series with Variable RegularitiesJingge Xiao, Yile Chen, Gao Cong et al.
Forecasting time series with irregular temporal structures remains challenging for universal pre-trained models. Existing approaches often assume regular sampling or depend heavily on imputation, limiting their applicability in real-world scenarios where irregularities are prevalent due to diverse sensing devices and recording practices. We introduce FlexTSF, a flexible forecasting model specifically designed for time series data with variable temporal regularities. At its foundation lies the IVP Patcher, a continuous-time patching module leveraging Initial Value Problems (IVPs) to inherently support uneven time intervals, variable sequence lengths, and missing values. FlexTSF employs a decoder-only architecture that integrates normalized timestamp inputs and domain-specific statistics through a specialized causal self-attention mechanism, enabling adaptability across domains. Extensive experiments on 16 datasets demonstrate FlexTSF's effectiveness, significantly outperforming existing models in classic forecasting scenarios, zero-shot generalization, and low-resource fine-tuning conditions. Ablation studies confirm the contributions of each design component and the advantage of not relying on predefined fixed patch lengths.
IVP-VAE: Modeling EHR Time Series with Initial Value Problem SolversJingge Xiao, Leonie Basso, Wolfgang Nejdl et al.
Continuous-time models such as Neural ODEs and Neural Flows have shown promising results in analyzing irregularly sampled time series frequently encountered in electronic health records. Based on these models, time series are typically processed with a hybrid of an initial value problem (IVP) solver and a recurrent neural network within the variational autoencoder architecture. Sequentially solving IVPs makes such models computationally less efficient. In this paper, we propose to model time series purely with continuous processes whose state evolution can be approximated directly by IVPs. This eliminates the need for recurrent computation and enables multiple states to evolve in parallel. We further fuse the encoder and decoder with one IVP solver utilizing its invertibility, which leads to fewer parameters and faster convergence. Experiments on three real-world datasets show that the proposed method can systematically outperform its predecessors, achieve state-of-the-art results, and have significant advantages in terms of data efficiency.
Example-based Explanations with Adversarial Attacks for Respiratory Sound AnalysisYi Chang, Zhao Ren, Thanh Tam Nguyen et al.
Respiratory sound classification is an important tool for remote screening of respiratory-related diseases such as pneumonia, asthma, and COVID-19. To facilitate the interpretability of classification results, especially ones based on deep learning, many explanation methods have been proposed using prototypes. However, existing explanation techniques often assume that the data is non-biased and the prediction results can be explained by a set of prototypical examples. In this work, we develop a unified example-based explanation method for selecting both representative data (prototypes) and outliers (criticisms). In particular, we propose a novel application of adversarial attacks to generate an explanation spectrum of data instances via an iterative fast gradient sign method. Such unified explanation can avoid over-generalisation and bias by allowing human experts to assess the model mistakes case by case. We performed a wide range of quantitative and qualitative evaluations to show that our approach generates effective and understandable explanation and is robust with many deep learning models
5.5LGDec 4, 2021
Unraveling Social Perceptions & Behaviors towards Migrants on TwitterAparup Khatua, Wolfgang Nejdl
We draw insights from the social psychology literature to identify two facets of Twitter deliberations about migrants, i.e., perceptions about migrants and behaviors towards mi-grants. Our theoretical anchoring helped us in identifying two prevailing perceptions (i.e., sympathy and antipathy) and two dominant behaviors (i.e., solidarity and animosity) of social media users towards migrants. We have employed unsuper-vised and supervised approaches to identify these perceptions and behaviors. In the domain of applied NLP, our study of-fers a nuanced understanding of migrant-related Twitter de-liberations. Our proposed transformer-based model, i.e., BERT + CNN, has reported an F1-score of 0.76 and outper-formed other models. Additionally, we argue that tweets con-veying antipathy or animosity can be broadly considered hate speech towards migrants, but they are not the same. Thus, our approach has fine-tuned the binary hate speech detection task by highlighting the granular differences between perceptual and behavioral aspects of hate speeches.
Prototype Learning for Interpretable Respiratory Sound AnalysisZhao Ren, Thanh Tam Nguyen, Wolfgang Nejdl
Remote screening of respiratory diseases has been widely studied as a non-invasive and early instrument for diagnosis purposes, especially in the pandemic. The respiratory sound classification task has been realized with numerous deep neural network (DNN) models due to their superior performance. However, in the high-stake medical domain where decisions can have significant consequences, it is desirable to develop interpretable models; thus, providing understandable reasons for physicians and patients. To address the issue, we propose a prototype learning framework, that jointly generates exemplar samples for explanation and integrates these samples into a layer of DNNs. The experimental results indicate that our method outperforms the state-of-the-art approaches on the largest public respiratory sound database.
18.2LGAug 17, 2021
FARF: A Fair and Adaptive Random Forests ClassifierWenbin Zhang, Albert Bifet, Xiangliang Zhang et al.
As Artificial Intelligence (AI) is used in more applications, the need to consider and mitigate biases from the learned models has followed. Most works in developing fair learning algorithms focus on the offline setting. However, in many real-world applications data comes in an online fashion and needs to be processed on the fly. Moreover, in practical application, there is a trade-off between accuracy and fairness that needs to be accounted for, but current methods often have multiple hyperparameters with non-trivial interaction to achieve fairness. In this paper, we propose a flexible ensemble algorithm for fair decision-making in the more challenging context of evolving online settings. This algorithm, called FARF (Fair and Adaptive Random Forests), is based on using online component classifiers and updating them according to the current distribution, that also accounts for fairness and a single hyperparameters that alters fairness-accuracy balance. Experiments on real-world discriminated data streams demonstrate the utility of FARF.
Hashing-Accelerated Graph Neural Networks for Link PredictionWei Wu, Bin Li, Chuan Luo et al.
Networks are ubiquitous in the real world. Link prediction, as one of the key problems for network-structured data, aims to predict whether there exists a link between two nodes. The traditional approaches are based on the explicit similarity computation between the compact node representation by embedding each node into a low-dimensional space. In order to efficiently handle the intensive similarity computation in link prediction, the hashing technique has been successfully used to produce the node representation in the Hamming space. However, the hashing-based link prediction algorithms face accuracy loss from the randomized hashing techniques or inefficiency from the learning to hash techniques in the embedding process. Currently, the Graph Neural Network (GNN) framework has been widely applied to the graph-related tasks in an end-to-end manner, but it commonly requires substantial computational resources and memory costs due to massive parameter learning, which makes the GNN-based algorithms impractical without the help of a powerful workhorse. In this paper, we propose a simple and effective model called #GNN, which balances the trade-off between accuracy and efficiency. #GNN is able to efficiently acquire node representation in the Hamming space for link prediction by exploiting the randomized hashing technique to implement message passing and capture high-order proximity in the GNN framework. Furthermore, we characterize the discriminative power of #GNN in probability. The extensive experimental results demonstrate that the proposed #GNN algorithm achieves accuracy comparable to the learning-based algorithms and outperforms the randomized algorithm, while running significantly faster than the learning-based algorithms. Also, the proposed algorithm shows excellent scalability on a large-scale network with the limited resources.
3.3SPMar 30, 2021
Data augmentation for dealing with low sampling rates in NILMTai Le Quy, Sergej Zerr, Eirini Ntoutsi et al.
Data have an important role in evaluating the performance of NILM algorithms. The best performance of NILM algorithms is achieved with high-quality evaluation data. However, many existing real-world data sets come with a low sampling quality, and often with gaps, lacking data for some recording periods. As a result, in such data, NILM algorithms can hardly recognize devices and estimate their power consumption properly. An important step towards improving the performance of these energy disaggregation methods is to improve the quality of the data sets. In this paper, we carry out experiments using several methods to increase the sampling rate of low sampling rate data. Our results show that augmentation of low-frequency data can support the considered NILM algorithms in estimating appliances' consumption with a higher F-score measurement.
11.5IROct 24, 2018
History by Diversity: Helping Historians search News ArchivesJaspreet Singh, Wolfgang Nejdl, Avishek Anand
Longitudinal corpora like newspaper archives are of immense value to historical research, and time as an important factor for historians strongly influences their search behaviour in these archives. While searching for articles published over time, a key preference is to retrieve documents which cover the important aspects from important points in time which is different from standard search behavior. To support this search strategy, we introduce the notion of a Historical Query Intent to explicitly model a historian's search task and define an aspect-time diversification problem over news archives. We present a novel algorithm, HistDiv, that explicitly models the aspects and important time windows based on a historian's information seeking behavior. By incorporating temporal priors based on publication times and temporal expressions, we diversify both on the aspect and temporal dimensions. We test our methods by constructing a test collection based on The New York Times Collection with a workload of 30 queries of historical intent assessed manually. We find that HistDiv outperforms all competitors in subtopic recall with a slight loss in precision. We also present results of a qualitative user study to determine wether this drop in precision is detrimental to user experience. Our results show that users still preferred HistDiv's ranking.
3.2IROct 23, 2018
Towards a Ranking Model for Semantic Layers over Digital ArchivesPavlos Fafalios, Vaibhav Kasturia, Wolfgang Nejdl
Archived collections of documents (like newspaper archives) serve as important information sources for historians, journalists, sociologists and other interested parties. Semantic Layers over such digital archives allow describing and publishing metadata and semantic information about the archived documents in a standard format (RDF), which in turn can be queried through a structured query language (e.g., SPARQL). This enables to run advanced queries by combining metadata of the documents (like publication date) and content-based semantic information (like entities mentioned in the documents). However, the results returned by structured queries can be numerous and also they all equally match the query. Thus, there is the need to rank these results in order to promote the most important ones. In this paper, we focus on this problem and propose a ranking model that considers and combines: i) the relativeness of documents to entities, ii) the timeliness of documents, and iii) the relations among the entities.
16.4SIOct 22, 2018
Node Representation Learning for Directed GraphsMegha Khosla, Jurek Leonhardt, Wolfgang Nejdl et al.
We propose a novel approach for learning node representations in directed graphs, which maintains separate views or embedding spaces for the two distinct node roles induced by the directionality of the edges. We argue that the previous approaches either fail to encode the edge directionality or their encodings cannot be generalized across tasks. With our simple \emph{alternating random walk} strategy, we generate role specific vertex neighborhoods and train node embeddings in their corresponding source/target roles while fully exploiting the semantics of directed graphs. We also unearth the limitations of evaluations on directed graphs in previous works and propose a clear strategy for evaluating link prediction and graph reconstruction in directed graphs. We conduct extensive experiments to showcase our effectiveness on several real-world datasets on link prediction, node classification and graph reconstruction tasks. We show that the embeddings from our approach are indeed robust, generalizable and well performing across multiple kinds of tasks and graphs. We show that we consistently outperform all baselines for node classification task. In addition to providing a theoretical interpretation of our method we also show that we are considerably more robust than the other directed graph approaches.
57.8IRAug 24, 2018
A Trio Neural Model for Dynamic Entity Relatedness RankingTu Nguyen, Tuan Tran, Wolfgang Nejdl
Measuring entity relatedness is a fundamental task for many natural language processing and information retrieval applications. Prior work often studies entity relatedness in static settings and an unsupervised manner. However, entities in real-world are often involved in many different relationships, consequently entity-relations are very dynamic over time. In this work, we propose a neural networkbased approach for dynamic entity relatedness, leveraging the collective attention as supervision. Our model is capable of learning rich and different entity representations in a joint framework. Through extensive experiments on large-scale datasets, we demonstrate that our method achieves better results than competitive baselines.
1.7IRMar 21, 2018
Multiple Models for Recommending Temporal Aspects of EntitiesTu Nguyen, Nattiya Kanhabua, Wolfgang Nejdl
Entity aspect recommendation is an emerging task in semantic search that helps users discover serendipitous and prominent information with respect to an entity, of which salience (e.g., popularity) is the most important factor in previous work. However, entity aspects are temporally dynamic and often driven by events happening over time. For such cases, aspect suggestion based solely on salience features can give unsatisfactory results, for two reasons. First, salience is often accumulated over a long time period and does not account for recency. Second, many aspects related to an event entity are strongly time-dependent. In this paper, we study the task of temporal aspect recommendation for a given entity, which aims at recommending the most relevant aspects and takes into account time in order to improve search experience. We propose a novel event-centric ensemble ranking method that learns from multiple time and type-dependent models and dynamically trades off salience and recency characteristics. Through extensive experiments on real-world query logs, we demonstrate that our method is robust and achieves better effectiveness than competitive baselines.
1.2CYNov 10, 2016
Why is it Difficult to Detect Sudden and Unexpected Epidemic Outbreaks in Twitter?Avaré Stewart, Sara Romano, Nattiya Kanhabua et al.
Social media services such as Twitter are a valuable source of information for decision support systems. Many studies have shown that this also holds for the medical domain, where Twitter is considered a viable tool for public health officials to sift through relevant information for the early detection, management, and control of epidemic outbreaks. This is possible due to the inherent capability of social media services to transmit information faster than traditional channels. However, the majority of current studies have limited their scope to the detection of common and seasonal health recurring events (e.g., Influenza-like Illness), partially due to the noisy nature of Twitter data, which makes outbreak detection and management very challenging. Within the European project M-Eco, we developed a Twitter-based Epidemic Intelligence (EI) system, which is designed to also handle a more general class of unexpected and aperiodic outbreaks. In particular, we faced three main research challenges in this endeavor: 1) dynamic classification to manage terminology evolution of Twitter messages, 2) alert generation to produce reliable outbreak alerts analyzing the (noisy) tweet time series, and 3) ranking and recommendation to support domain experts for better assessment of the generated alerts. In this paper, we empirically evaluate our proposed approach to these challenges using real-world outbreak datasets and a large collection of tweets. We validate our solution with domain experts, describe our experiences, and give a more realistic view on the benefits and issues of analyzing social media for public health.
5.8IRJul 16, 2014
Collaborative Filtering Ensemble for Personalized Name RecommendationBernat Coma-Puig, Ernesto Diaz-Aviles, Wolfgang Nejdl
Out of thousands of names to choose from, picking the right one for your child is a daunting task. In this work, our objective is to help parents making an informed decision while choosing a name for their baby. We follow a recommender system approach and combine, in an ensemble, the individual rankings produced by simple collaborative filtering algorithms in order to produce a personalized list of names that meets the individual parents' taste. Our experiments were conducted using real-world data collected from the query logs of 'nameling' (nameling.net), an online portal for searching and exploring names, which corresponds to the dataset released in the context of the ECML PKDD Discover Challenge 2013. Our approach is intuitive, easy to implement, and features fast training and prediction steps.
3.2AIFeb 27, 2013
Model-Based Diagnosis with Qualitative Temporal UncertaintyWolfgang Nejdl, Johann Gamper
In this paper we describe a framework for model-based diagnosis of dynamic systems, which extends previous work in this field by using and expressing temporal uncertainty in the form of qualitative interval relations a la Allen. Based on a logical framework extended by qualitative and quantitative temporal constraints we show how to describe behavioral models (both consistency- and abductive-based), discuss how to use abstract observations and show how abstract temporal diagnoses are computed. This yields an expressive framework, which allows the representation of complex temporal behavior allowing us to represent temporal uncertainty. Due to its abstraction capabilities computation is made independent of the number of observations and time points in a temporal setting. An example of hepatitis diagnosis is used throughout the paper.