Shengjie Liu

Shengjie Liu, Chuang Zhu, Feng Xu et al.

The evaluation of human epidermal growth factor receptor 2 (HER2) expression is essential to formulate a precise treatment for breast cancer. The routine evaluation of HER2 is conducted with immunohistochemical techniques (IHC), which is very expensive. Therefore, for the first time, we propose a breast cancer immunohistochemical (BCI) benchmark attempting to synthesize IHC data directly with the paired hematoxylin and eosin (HE) stained images. The dataset contains 4870 registered image pairs, covering a variety of HER2 expression levels. Based on BCI, as a minor contribution, we further build a pyramid pix2pix image generation method, which achieves better HE to IHC translation results than the other current popular algorithms. Extensive experiments demonstrate that BCI poses new challenges to the existing image translation research. Besides, BCI also opens the door for future pathology studies in HER2 expression evaluation based on the synthesized IHC images. BCI dataset can be downloaded from https://bupt-ai-cz.github.io/BCI.

Shengjie Liu, Chuang Zhu, Wenqi Tang

Unsupervised domain adaptation (UDA) for semantic segmentation addresses the cross-domain problem with fine source domain labels. However, the acquisition of semantic labels has always been a difficult step, many scenarios only have weak labels (e.g. bounding boxes). For scenarios where weak supervision and cross-domain problems coexist, this paper defines a new task: unsupervised domain adaptation based on weak source domain labels (WUDA). To explore solutions for this task, this paper proposes two intuitive frameworks: 1) Perform weakly supervised semantic segmentation in the source domain, and then implement unsupervised domain adaptation; 2) Train an object detection model using source domain data, then detect objects in the target domain and implement weakly supervised semantic segmentation. We observe that the two frameworks behave differently when the datasets change. Therefore, we construct dataset pairs with a wide range of domain shifts and conduct extended experiments to analyze the impact of different domain shifts on the two frameworks. In addition, to measure domain shift, we apply the metric representation shift to urban landscape image segmentation for the first time. The source code and constructed datasets are available at \url{https://github.com/bupt-ai-cz/WUDA}.

Jing Wu, Suiyao Chen, Qi Zhao et al.

Self-supervised representation learning methods have achieved significant success in computer vision and natural language processing, where data samples exhibit explicit spatial or semantic dependencies. However, applying these methods to tabular data is challenging due to the less pronounced dependencies among data samples. In this paper, we address this limitation by introducing SwitchTab, a novel self-supervised method specifically designed to capture latent dependencies in tabular data. SwitchTab leverages an asymmetric encoder-decoder framework to decouple mutual and salient features among data pairs, resulting in more representative embeddings. These embeddings, in turn, contribute to better decision boundaries and lead to improved results in downstream tasks. To validate the effectiveness of SwitchTab, we conduct extensive experiments across various domains involving tabular data. The results showcase superior performance in end-to-end prediction tasks with fine-tuning. Moreover, we demonstrate that pre-trained salient embeddings can be utilized as plug-and-play features to enhance the performance of various traditional classification methods (e.g., Logistic Regression, XGBoost, etc.). Lastly, we highlight the capability of SwitchTab to create explainable representations through visualization of decoupled mutual and salient features in the latent space.

Hengrui Cai, Shengjie Liu, Rui Song

This paper explores the causal reasoning of large language models (LLMs) to enhance their interpretability and reliability in advancing artificial intelligence. Despite the proficiency of LLMs in a range of tasks, their potential for understanding causality requires further exploration. We propose a novel causal attribution model that utilizes ``do-operators" for constructing counterfactual scenarios, allowing us to systematically quantify the influence of input numerical data and LLMs' pre-existing knowledge on their causal reasoning processes. Our newly developed experimental setup assesses LLMs' reliance on contextual information and inherent knowledge across various domains. Our evaluation reveals that LLMs' causal reasoning ability mainly depends on the context and domain-specific knowledge provided. In the absence of such knowledge, LLMs can still maintain a degree of causal reasoning using the available numerical data, albeit with limitations in the calculations. This motivates the proposed fine-tuned LLM for pairwise causal discovery, effectively leveraging both knowledge and numerical information.

Shengjie Liu, Jing Wu, Jingyuan Bao et al.

This paper describes an investigation of the robustness of large language models (LLMs) for retrieval augmented generation (RAG)-based summarization tasks. While LLMs provide summarization capabilities, their performance in complex, real-world scenarios remains under-explored. Our first contribution is LogicSumm, an innovative evaluation framework incorporating realistic scenarios to assess LLM robustness during RAG-based summarization. Based on limitations identified by LogiSumm, we then developed SummRAG, a comprehensive system to create training dialogues and fine-tune a model to enhance robustness within LogicSumm's scenarios. SummRAG is an example of our goal of defining structured methods to test the capabilities of an LLM, rather than addressing issues in a one-off fashion. Experimental results confirm the power of SummRAG, showcasing improved logical coherence and summarization quality. Data, corresponding model weights, and Python code are available online.

Xinyang Huang, Chuang Zhu, Ruiying Ren et al.

Semi-supervised domain adaptation (SSDA) has been extensively researched due to its ability to improve classification performance and generalization ability of models by using a small amount of labeled data on the target domain. However, existing methods cannot effectively adapt to the target domain due to difficulty in fully learning rich and complex target semantic information and relationships. In this paper, we propose a novel SSDA learning framework called semantic regularization learning (SERL), which captures the target semantic information from multiple perspectives of regularization learning to achieve adaptive fine-tuning of the source pre-trained model on the target domain. SERL includes three robust semantic regularization techniques. Firstly, semantic probability contrastive regularization (SPCR) helps the model learn more discriminative feature representations from a probabilistic perspective, using semantic information on the target domain to understand the similarities and differences between samples. Additionally, adaptive weights in SPCR can help the model learn the semantic distribution correctly through the probabilities of different samples. To further comprehensively understand the target semantic distribution, we introduce hard-sample mixup regularization (HMR), which uses easy samples as guidance to mine the latent target knowledge contained in hard samples, thereby learning more complete and complex target semantic knowledge. Finally, target prediction regularization (TPR) regularizes the target predictions of the model by maximizing the correlation between the current prediction and the past learned objective, thereby mitigating the misleading of semantic information caused by erroneous pseudo-labels. Extensive experiments on three benchmark datasets demonstrate that our SERL method achieves state-of-the-art performance.

Shengjie Liu, Siqin Wang, Lu Zhang

Many real-world applications rely on land surface temperature (LST) data at high spatiotemporal resolution. In complex urban areas, LST exhibits significant variations, fluctuating dramatically within and across city blocks. Landsat provides high spatial resolution data at 100 meters but is limited by long revisit time, with cloud cover further disrupting data collection. Here, we propose DELAG, a deep ensemble learning method that integrates annual temperature cycles and Gaussian processes, to reconstruct Landsat LST in complex urban areas. Leveraging the cross-track characteristics and dual-satellite operation of Landsat since 2021, we further enhance data availability to 4 scenes every 16 days. We select New York City, London and Hong Kong from three different continents as study areas. Experiments show that DELAG successfully reconstructed LST in the three cities under clear-sky (RMSE = 0.73-0.96 K) and heavily-cloudy (RMSE = 0.84-1.62 K) situations, superior to existing methods. Additionally, DELAG can quantify uncertainty that enhances LST reconstruction reliability. We further tested the reconstructed LST to estimate near-surface air temperature, achieving results (RMSE = 1.48-2.11 K) comparable to those derived from clear-sky LST (RMSE = 1.63-2.02 K). The results demonstrate the successful reconstruction through DELAG and highlight the broader applications of LST reconstruction for estimating accurate air temperature. Our study thus provides a novel and practical method for Landsat LST reconstruction, particularly suited for complex urban areas within Landsat cross-track areas, taking one step toward addressing complex climate events at high spatiotemporal resolution.

Shengjie Liu, Lu Zhang, Siqin Wang

Central to Earth observation is the trade-off between spatial and temporal resolution. For temperature, this is especially critical because real-world applications require high spatiotemporal resolution data. Current technology allows for hourly temperature observations at 2 km, but only every 16 days at 100 m, a gap further exacerbated by cloud cover. Earth system models offer continuous hourly temperature data, but at a much coarser spatial resolution (9-31 km). Here, we present a physics-guided deep learning framework for temperature data reconstruction that integrates these two data sources. The proposed framework uses a convolutional neural network that incorporates the annual temperature cycle and includes a linear term to amplify the coarse Earth system model output into fine-scale temperature values observed from satellites. We evaluated this framework using data from two satellites, GOES-16 (2 km, hourly) and Landsat (100 m, every 16 days), and demonstrated effective temperature reconstruction with hold-out and in situ data across four datasets. This physics-guided deep learning framework opens new possibilities for generating high-resolution temperature data across spatial and temporal scales, under all weather conditions and globally.

Shengjie Liu, Li Dong, Zhenyu Zhang

We present a framework for uncovering and exploiting dependencies among tools and documents to enhance exemplar artifact generation. Our method begins by constructing a tool knowledge graph from tool schemas,including descriptions, arguments, and output payloads, using a DeepResearch-inspired analysis. In parallel, we derive a complementary knowledge graph from internal documents and SOPs, which is then fused with the tool graph. To generate exemplar plans, we adopt a deep-sparse integration strategy that aligns structural tool dependencies with procedural knowledge. Experiments demonstrate that this unified framework effectively models tool interactions and improves plan generation, underscoring the benefits of linking tool graphs with domain knowledge graphs for tool-augmented reasoning and planning.

Yifu Lu, Shengjie Liu, Li Dong

Agentic tool use has gained traction with the rise of agentic tool calling, yet most existing work overlooks the complexity of multi-turn tool interactions. We introduce OrchDAG, a synthetic data generation pipeline that models tool execution as directed acyclic graphs (DAGs) with controllable complexity. Using this dataset, we benchmark model performance and propose a graph-based reward to enhance RLVR training. Experiments show that the dataset presents a challenging but solvable benchmark, and the proposed reward is effective when combined with GRPO-style algorithms, highlighting the importance of leveraging topological structure and data complexity in multi-turn tool use.

Jing Wu, Zhixin Lai, Shengjie Liu et al.

Exploring the optimal management strategy for nitrogen and irrigation has a significant impact on crop yield, economic profit, and the environment. To tackle this optimization challenge, this paper introduces a deployable \textbf{CR}op Management system \textbf{O}ver all \textbf{P}ossible \textbf{S}tate availabilities (CROPS). CROPS employs a language model (LM) as a reinforcement learning (RL) agent to explore optimal management strategies within the Decision Support System for Agrotechnology Transfer (DSSAT) crop simulations. A distinguishing feature of this system is that the states used for decision-making are partially observed through random masking. Consequently, the RL agent is tasked with two primary objectives: optimizing management policies and inferring masked states. This approach significantly enhances the RL agent's robustness and adaptability across various real-world agricultural scenarios. Extensive experiments on maize crops in Florida, USA, and Zaragoza, Spain, validate the effectiveness of CROPS. Not only did CROPS achieve State-of-the-Art (SOTA) results across various evaluation metrics such as production, profit, and sustainability, but the trained management policies are also immediately deployable in over of ten millions of real-world contexts. Furthermore, the pre-trained policies possess a noise resilience property, which enables them to minimize potential sensor biases, ensuring robustness and generalizability. Finally, unlike previous methods, the strength of CROPS lies in its unified and elegant structure, which eliminates the need for pre-defined states or multi-stage training. These advancements highlight the potential of CROPS in revolutionizing agricultural practices.

Chuang Zhu, Shengjie Liu, Zekuan Yu et al.

For invasive breast cancer, immunohistochemical (IHC) techniques are often used to detect the expression level of human epidermal growth factor receptor-2 (HER2) in breast tissue to formulate a precise treatment plan. From the perspective of saving manpower, material and time costs, directly generating IHC-stained images from Hematoxylin and Eosin (H&E) stained images is a valuable research direction. Therefore, we held the breast cancer immunohistochemical image generation challenge, aiming to explore novel ideas of deep learning technology in pathological image generation and promote research in this field. The challenge provided registered H&E and IHC-stained image pairs, and participants were required to use these images to train a model that can directly generate IHC-stained images from corresponding H&E-stained images. We selected and reviewed the five highest-ranking methods based on their PSNR and SSIM metrics, while also providing overviews of the corresponding pipelines and implementations. In this paper, we further analyze the current limitations in the field of breast cancer immunohistochemical image generation and forecast the future development of this field. We hope that the released dataset and the challenge will inspire more scholars to jointly study higher-quality IHC-stained image generation.

Xinyu Jia, Chuang Zhu, Minzhen Li et al.

It is very challenging for various visual tasks such as image fusion, pedestrian detection and image-to-image translation in low light conditions due to the loss of effective target areas. In this case, infrared and visible images can be used together to provide both rich detail information and effective target areas. In this paper, we present LLVIP, a visible-infrared paired dataset for low-light vision. This dataset contains 30976 images, or 15488 pairs, most of which were taken at very dark scenes, and all of the images are strictly aligned in time and space. Pedestrians in the dataset are labeled. We compare the dataset with other visible-infrared datasets and evaluate the performance of some popular visual algorithms including image fusion, pedestrian detection and image-to-image translation on the dataset. The experimental results demonstrate the complementary effect of fusion on image information, and find the deficiency of existing algorithms of the three visual tasks in very low-light conditions. We believe the LLVIP dataset will contribute to the community of computer vision by promoting image fusion, pedestrian detection and image-to-image translation in very low-light applications. The dataset is being released in https://bupt-ai-cz.github.io/LLVIP. Raw data is also provided for further research such as image registration.

Shengjie Liu, Qian Shi, Liangpei Zhang

Current hyperspectral image classification assumes that a predefined classification system is closed and complete, and there are no unknown or novel classes in the unseen data. However, this assumption may be too strict for the real world. Often, novel classes are overlooked when the classification system is constructed. The closed nature forces a model to assign a label given a new sample and may lead to overestimation of known land covers (e.g., crop area). To tackle this issue, we propose a multitask deep learning method that simultaneously conducts classification and reconstruction in the open world (named MDL4OW) where unknown classes may exist. The reconstructed data are compared with the original data; those failing to be reconstructed are considered unknown, based on the assumption that they are not well represented in the latent features due to the lack of labels. A threshold needs to be defined to separate the unknown and known classes; we propose two strategies based on the extreme value theory for few-shot and many-shot scenarios. The proposed method was tested on real-world hyperspectral images; state-of-the-art results were achieved, e.g., improving the overall accuracy by 4.94% for the Salinas data. By considering the existence of unknown classes in the open world, our method achieved more accurate hyperspectral image classification, especially under the few-shot context.

Shengjie Liu, Qian Shi

In this letter, we propose a multitask deep learning method for classification of multiple hyperspectral data in a single training. Deep learning models have achieved promising results on hyperspectral image classification, but their performance highly rely on sufficient labeled samples, which are scarce on hyperspectral images. However, samples from multiple data sets might be sufficient to train one deep learning model, thereby improving its performance. To do so, we trained an identical feature extractor for all data, and the extracted features were fed into corresponding Softmax classifiers. Spectral knowledge was introduced to ensure that the shared features were similar across domains. Four hyperspectral data sets were used in the experiments. We achieved higher classification accuracies on three data sets (Pavia University, Pavia Center, and Indian Pines) and competitive results on the Salinas Valley data compared with the baseline. Spectral knowledge was useful to prevent the deep network from overfitting when the data shared similar spectral response. The proposed method tested on two deep CNNs successfully shows its ability to utilize samples from multiple data sets and enhance networks' performance.