Mohd Zaki

Mohd Zaki, Jayadeva, Mausam et al.

Information extraction and textual comprehension from materials literature are vital for developing an exhaustive knowledge base that enables accelerated materials discovery. Language models have demonstrated their capability to answer domain-specific questions and retrieve information from knowledge bases. However, there are no benchmark datasets in the materials domain that can evaluate the understanding of the key concepts by these language models. In this work, we curate a dataset of 650 challenging questions from the materials domain that require the knowledge and skills of a materials student who has cleared their undergraduate degree. We classify these questions based on their structure and the materials science domain-based subcategories. Further, we evaluate the performance of GPT-3.5 and GPT-4 models on solving these questions via zero-shot and chain of thought prompting. It is observed that GPT-4 gives the best performance (~62% accuracy) as compared to GPT-3.5. Interestingly, in contrast to the general observation, no significant improvement in accuracy is observed with the chain of thought prompting. To evaluate the limitations, we performed an error analysis, which revealed conceptual errors (~64%) as the major contributor compared to computational errors (~36%) towards the reduced performance of LLMs. We hope that the dataset and analysis performed in this work will promote further research in developing better materials science domain-specific LLMs and strategies for information extraction.

Tanishq Gupta, Mohd Zaki, Devanshi Khatsuriya et al.

A crucial component in the curation of KB for a scientific domain (e.g., materials science, foods & nutrition, fuels) is information extraction from tables in the domain's published research articles. To facilitate research in this direction, we define a novel NLP task of extracting compositions of materials (e.g., glasses) from tables in materials science papers. The task involves solving several challenges in concert, such as tables that mention compositions have highly varying structures; text in captions and full paper needs to be incorporated along with data in tables; and regular languages for numbers, chemical compounds and composition expressions must be integrated into the model. We release a training dataset comprising 4,408 distantly supervised tables, along with 1,475 manually annotated dev and test tables. We also present a strong baseline DISCOMAT, that combines multiple graph neural networks with several task-specific regular expressions, features, and constraints. We show that DISCOMAT outperforms recent table processing architectures by significant margins.

Kausik Hira, Mohd Zaki, Dhruvil Sheth et al.

The discovery of new materials has a documented history of propelling human progress for centuries and more. The behaviour of a material is a function of its composition, structure, and properties, which further depend on its processing and testing conditions. Recent developments in deep learning and natural language processing have enabled information extraction at scale from published literature such as peer-reviewed publications, books, and patents. However, this information is spread in multiple formats, such as tables, text, and images, and with little or no uniformity in reporting style giving rise to several machine learning challenges. Here, we discuss, quantify, and document these challenges in automated information extraction (IE) from materials science literature towards the creation of a large materials science knowledge base. Specifically, we focus on IE from text and tables and outline several challenges with examples. We hope the present work inspires researchers to address the challenges in a coherent fashion, providing a fillip to IE towards developing a materials knowledge base.

Mohd Zaki, Siddhant Sharma, Sunil Kumar Gurjar et al.

Cement is the most used construction material. The performance of cement hydrate depends on the constituent phases, viz. alite, belite, aluminate, and ferrites present in the cement clinker, both qualitatively and quantitatively. Traditionally, clinker phases are analyzed from optical images relying on a domain expert and simple image processing techniques. However, the non-uniformity of the images, variations in the geometry and size of the phases, and variabilities in the experimental approaches and imaging methods make it challenging to obtain the phases. Here, we present a machine learning (ML) approach to detect clinker microstructure phases automatically. To this extent, we create the first annotated dataset of cement clinker by segmenting alite and belite particles. Further, we use supervised ML methods to train models for identifying alite and belite regions. Specifically, we finetune the image detection and segmentation model Detectron-2 on the cement microstructure to develop a model for detecting the cement phases, namely, Cementron. We demonstrate that Cementron, trained only on literature data, works remarkably well on new images obtained from our experiments, demonstrating its generalizability. We make Cementron available for public use.

Magdalena Lederbauer, Siddharth Betala, Xiyao Li et al.

The development of synthesis procedures remains a fundamental challenge in materials discovery, with procedural knowledge scattered across decades of scientific literature in unstructured formats that are challenging for systematic analysis. In this paper, we propose a multi-modal toolbox that employs large language models (LLMs) and vision language models (VLMs) to automatically extract and organize synthesis procedures and performance data from materials science publications, covering text and figures. We curated 81k open-access papers, yielding LeMat-Synth (v 1.0): a dataset containing synthesis procedures spanning 35 synthesis methods and 16 material classes, structured according to an ontology specific to materials science. The extraction quality is rigorously evaluated on a subset of 2.5k synthesis procedures through a combination of expert annotations and a scalable LLM-as-a-judge framework. Beyond the dataset, we release a modular, open-source software library designed to support community-driven extension to new corpora and synthesis domains. Altogether, this work provides an extensible infrastructure to transform unstructured literature into machine-readable information. This lays the groundwork for predictive modeling of synthesis procedures as well as modeling synthesis--structure--property relationships.

Ziyang Huang, Yi Cao, Ali K. Shargh et al.

Large language models are increasingly deployed as autonomous coding agents and have achieved remarkably strong performance on software engineering benchmarks. However, it is unclear whether such success transfers to computational scientific workflows, where tasks require not only strong coding ability, but also the ability to navigate complex, domain-specific procedures and to interpret results in the context of scientific claims. To address this question, we present AutoMat, a benchmark for evaluating LLM-based agents' ability to reproduce claims from computational materials science. AutoMat poses three interrelated challenges: recovering underspecified computational procedures, navigating specialized toolchains, and determining whether the resulting evidence supports a claim. By working closely with subject matter experts, we curate a set of claims from real materials science papers to test whether coding agents can recover and execute the end-to-end workflow needed to support (or undermine) such claims. We then evaluate multiple representative coding agent settings across several foundation models. Our results show that current LLM-based agents obtain low overall success rates on AutoMat, with the best-performing setting achieving a success rate of only 54.1%. Error analysis further reveals that agents perform worst when workflows must be reconstructed from paper text alone and that they fail primarily due to incomplete procedures, methodological deviations, and execution fragility. Taken together, these findings position AutoMat as both a benchmark for computational scientific reproducibility and a tool for diagnosing the current limitations of agentic systems in AI-for-science settings.

Aritra Roy, Kevin Shen, Andrew MacBride et al.

Large language models (LLMs) are rapidly changing how researchers in materials science and chemistry discover, organize, and act on scientific knowledge. This paper analyzes a broad set of community-developed LLM applications in an effort to identify emerging patterns in how these systems can be used across the scientific research lifecycle. We organize the projects into two complementary categories: Knowledge Infrastructure, systems that structure, retrieve, synthesize, and validate scientific information; and Action Systems, systems that execute, coordinate, or automate scientific work across computational and experimental environments. The submissions reveal a shift from single-purpose LLM tools toward integrated, multi-agent workflows that combine retrieval, reasoning, tool use, and domain-specific validation. Prominent themes include retrieval-augmented generation as grounding infrastructure, persistent structured knowledge representations, multimodal and multilingual scientific inputs, and early progress toward laboratory-integrated closed-loop systems. Together, these results suggest that LLMs are evolving from general-purpose assistants into composable infrastructure for scientific reasoning and action. This work provides a community snapshot of that transition and a practical taxonomy for understanding emerging LLM-enabled workflows in materials science and chemistry.

Vaibhav Mishra, Somaditya Singh, Dhruv Ahlawat et al.

Materials discovery and development are critical for addressing global challenges. Yet, the exponential growth in materials science literature comprising vast amounts of textual data has created significant bottlenecks in knowledge extraction, synthesis, and scientific reasoning. Large Language Models (LLMs) offer unprecedented opportunities to accelerate materials research through automated analysis and prediction. Still, their effective deployment requires domain-specific adaptation for understanding and solving domain-relevant tasks. Here, we present LLaMat, a family of foundational models for materials science developed through continued pretraining of LLaMA models on an extensive corpus of materials literature and crystallographic data. Through systematic evaluation, we demonstrate that LLaMat excels in materials-specific NLP and structured information extraction while maintaining general linguistic capabilities. The specialized LLaMat-CIF variant demonstrates unprecedented capabilities in crystal structure generation, predicting stable crystals with high coverage across the periodic table. Intriguingly, despite LLaMA-3's superior performance in comparison to LLaMA-2, we observe that LLaMat-2 demonstrates unexpectedly enhanced domain-specific performance across diverse materials science tasks, including structured information extraction from text and tables, more particularly in crystal structure generation, a potential adaptation rigidity in overtrained LLMs. Altogether, the present work demonstrates the effectiveness of domain adaptation towards developing practically deployable LLM copilots for materials research. Beyond materials science, our findings reveal important considerations for domain adaptation of LLMs, such as model selection, training methodology, and domain-specific performance, which may influence the development of specialized scientific AI systems.

Yoel Zimmermann, Adib Bazgir, Zartashia Afzal et al.

Here, we present the outcomes from the second Large Language Model (LLM) Hackathon for Applications in Materials Science and Chemistry, which engaged participants across global hybrid locations, resulting in 34 team submissions. The submissions spanned seven key application areas and demonstrated the diverse utility of LLMs for applications in (1) molecular and material property prediction; (2) molecular and material design; (3) automation and novel interfaces; (4) scientific communication and education; (5) research data management and automation; (6) hypothesis generation and evaluation; and (7) knowledge extraction and reasoning from scientific literature. Each team submission is presented in a summary table with links to the code and as brief papers in the appendix. Beyond team results, we discuss the hackathon event and its hybrid format, which included physical hubs in Toronto, Montreal, San Francisco, Berlin, Lausanne, and Tokyo, alongside a global online hub to enable local and virtual collaboration. Overall, the event highlighted significant improvements in LLM capabilities since the previous year's hackathon, suggesting continued expansion of LLMs for applications in materials science and chemistry research. These outcomes demonstrate the dual utility of LLMs as both multipurpose models for diverse machine learning tasks and platforms for rapid prototyping custom applications in scientific research.

Indrajeet Mandal, Jitendra Soni, Mohd Zaki et al.

Large language models (LLMs) are revolutionizing self driving laboratories (SDLs) for materials research, promising unprecedented acceleration of scientific discovery. However, current SDL implementations rely on rigid protocols that fail to capture the adaptability and intuition of expert scientists in dynamic experimental settings. We introduce Artificially Intelligent Lab Assistant (AILA), a framework automating atomic force microscopy through LLM driven agents. Further, we develop AFMBench a comprehensive evaluation suite challenging AI agents across the complete scientific workflow from experimental design to results analysis. We find that state of the art models struggle with basic tasks and coordination scenarios. Notably, Claude 3.5 sonnet performs unexpectedly poorly despite excelling in materials domain question answering (QA) benchmarks, revealing that domain specific QA proficiency does not necessarily translate to effective agentic capabilities. Additionally, we observe that LLMs can deviate from instructions, raising safety alignment concerns for SDL applications. Our ablations reveal that multi agent frameworks outperform single-agent architectures. We also observe significant prompt fragility, where slight modifications in prompt structure cause substantial performance variations in capable models like GPT 4o. Finally, we evaluate AILA's effectiveness in increasingly advanced experiments AFM calibration, feature detection, mechanical property measurement, graphene layer counting, and indenter detection. Our findings underscore the necessity for rigorous benchmarking protocols and prompt engineering strategies before deploying AI laboratory assistants in scientific research environments.

Tanishq Gupta, Mohd Zaki, N. M. Anoop Krishnan et al.

An overwhelmingly large amount of knowledge in the materials domain is generated and stored as text published in peer-reviewed scientific literature. Recent developments in natural language processing, such as bidirectional encoder representations from transformers (BERT) models, provide promising tools to extract information from these texts. However, direct application of these models in the materials domain may yield suboptimal results as the models themselves may not be trained on notations and jargon that are specific to the domain. Here, we present a materials-aware language model, namely, MatSciBERT, which is trained on a large corpus of scientific literature published in the materials domain. We further evaluate the performance of MatSciBERT on three downstream tasks, namely, abstract classification, named entity recognition, and relation extraction, on different materials datasets. We show that MatSciBERT outperforms SciBERT, a language model trained on science corpus, on all the tasks. Further, we discuss some of the applications of MatSciBERT in the materials domain for extracting information, which can, in turn, contribute to materials discovery or optimization. Finally, to make the work accessible to the larger materials community, we make the pretrained and finetuned weights and the models of MatSciBERT freely accessible.