Federico Magistri

Yue Pan, Federico Magistri, Thomas Läbe et al.

Monitoring plants and fruits at high resolution play a key role in the future of agriculture. Accurate 3D information can pave the way to a diverse number of robotic applications in agriculture ranging from autonomous harvesting to precise yield estimation. Obtaining such 3D information is non-trivial as agricultural environments are often repetitive and cluttered, and one has to account for the partial observability of fruit and plants. In this paper, we address the problem of jointly estimating complete 3D shapes of fruit and their pose in a 3D multi-resolution map built by a mobile robot. To this end, we propose an online multi-resolution panoptic mapping system where regions of interest are represented with a higher resolution. We exploit data to learn a general fruit shape representation that we use at inference time together with an occlusion-aware differentiable rendering pipeline to complete partial fruit observations and estimate the 7 DoF pose of each fruit in the map. The experiments presented in this paper evaluated both in the controlled environment and in a commercial greenhouse, show that our novel algorithm yields higher completion and pose estimation accuracy than existing methods, with an improvement of 41% in completion accuracy and 52% in pose estimation accuracy while keeping a low inference time of 0.6s in average. Codes are available at: https://github.com/PRBonn/HortiMapping.

Pieter M. Blok, Federico Magistri, Cyrill Stachniss et al.

Potato yield is an important metric for farmers to further optimize their cultivation practices. Potato yield can be estimated on a harvester using an RGB-D camera that can estimate the three-dimensional (3D) volume of individual potato tubers. A challenge, however, is that the 3D shape derived from RGB-D images is only partially completed, underestimating the actual volume. To address this issue, we developed a 3D shape completion network, called CoRe++, which can complete the 3D shape from RGB-D images. CoRe++ is a deep learning network that consists of a convolutional encoder and a decoder. The encoder compresses RGB-D images into latent vectors that are used by the decoder to complete the 3D shape using the deep signed distance field network (DeepSDF). To evaluate our CoRe++ network, we collected partial and complete 3D point clouds of 339 potato tubers on an operational harvester in Japan. On the 1425 RGB-D images in the test set (representing 51 unique potato tubers), our network achieved a completion accuracy of 2.8 mm on average. For volumetric estimation, the root mean squared error (RMSE) was 22.6 ml, and this was better than the RMSE of the linear regression (31.1 ml) and the base model (36.9 ml). We found that the RMSE can be further reduced to 18.2 ml when performing the 3D shape completion in the center of the RGB-D image. With an average 3D shape completion time of 10 milliseconds per tuber, we can conclude that CoRe++ is both fast and accurate enough to be implemented on an operational harvester for high-throughput potato yield estimation. CoRe++'s high-throughput and accurate processing allows it to be applied to other tuber, fruit and vegetable crops, thereby enabling versatile, accurate and real-time yield monitoring in precision agriculture. Our code, network weights and dataset are publicly available at https://github.com/UTokyo-FieldPhenomics-Lab/corepp.git.

Jan Weyler, Federico Magistri, Elias Marks et al.

The production of food, feed, fiber, and fuel is a key task of agriculture, which has to cope with many challenges in the upcoming decades, e.g., a higher demand, climate change, lack of workers, and the availability of arable land. Vision systems can support making better and more sustainable field management decisions, but also support the breeding of new crop varieties by allowing temporally dense and reproducible measurements. Recently, agricultural robotics got an increasing interest in the vision and robotics communities since it is a promising avenue for coping with the aforementioned lack of workers and enabling more sustainable production. While large datasets and benchmarks in other domains are readily available and enable significant progress, agricultural datasets and benchmarks are comparably rare. We present an annotated dataset and benchmarks for the semantic interpretation of real agricultural fields. Our dataset recorded with a UAV provides high-quality, pixel-wise annotations of crops and weeds, but also crop leaf instances at the same time. Furthermore, we provide benchmarks for various tasks on a hidden test set comprised of different fields: known fields covered by the training data and a completely unseen field. Our dataset, benchmarks, and code are available at \url{https://www.phenobench.org}.

Felix Stache, Jonas Westheider, Federico Magistri et al.

Efficient data collection methods play a major role in helping us better understand the Earth and its ecosystems. In many applications, the usage of unmanned aerial vehicles (UAVs) for monitoring and remote sensing is rapidly gaining momentum due to their high mobility, low cost, and flexible deployment. A key challenge is planning missions to maximize the value of acquired data in large environments given flight time limitations. This is, for example, relevant for monitoring agricultural fields. This paper addresses the problem of adaptive path planning for accurate semantic segmentation of using UAVs. We propose an online planning algorithm which adapts the UAV paths to obtain high-resolution semantic segmentations necessary in areas with fine details as they are detected in incoming images. This enables us to perform close inspections at low altitudes only where required, without wasting energy on exhaustive mapping at maximum image resolution. A key feature of our approach is a new accuracy model for deep learning-based architectures that captures the relationship between UAV altitude and semantic segmentation accuracy. We evaluate our approach on different domains using real-world data, proving the efficacy and generability of our solution.

Gianmarco Roggiolani, Matteo Sodano, Tiziano Guadagnino et al.

Plant phenotyping is a central task in agriculture, as it describes plants' growth stage, development, and other relevant quantities. Robots can help automate this process by accurately estimating plant traits such as the number of leaves, leaf area, and the plant size. In this paper, we address the problem of joint semantic, plant instance, and leaf instance segmentation of crop fields from RGB data. We propose a single convolutional neural network that addresses the three tasks simultaneously, exploiting their underlying hierarchical structure. We introduce task-specific skip connections, which our experimental evaluation proves to be more beneficial than the usual schemes. We also propose a novel automatic post-processing, which explicitly addresses the problem of spatially close instances, common in the agricultural domain because of overlapping leaves. Our architecture simultaneously tackles these problems jointly in the agricultural context. Previous works either focus on plant or leaf segmentation, or do not optimise for semantic segmentation. Results show that our system has superior performance compared to state-of-the-art approaches, while having a reduced number of parameters and is operating at camera frame rate.

Julius Rückin, Federico Magistri, Cyrill Stachniss et al.

Unmanned aerial vehicles (UAVs) are frequently used for aerial mapping and general monitoring tasks. Recent progress in deep learning enabled automated semantic segmentation of imagery to facilitate the interpretation of large-scale complex environments. Commonly used supervised deep learning for segmentation relies on large amounts of pixel-wise labelled data, which is tedious and costly to annotate. The domain-specific visual appearance of aerial environments often prevents the usage of models pre-trained on publicly available datasets. To address this, we propose a novel general planning framework for UAVs to autonomously acquire informative training images for model re-training. We leverage multiple acquisition functions and fuse them into probabilistic terrain maps. Our framework combines the mapped acquisition function information into the UAV's planning objectives. In this way, the UAV adaptively acquires informative aerial images to be manually labelled for model re-training. Experimental results on real-world data and in a photorealistic simulation show that our framework maximises model performance and drastically reduces labelling efforts. Our map-based planners outperform state-of-the-art local planning.

Matteo Sodano, Federico Magistri, Tiziano Guadagnino et al.

Perception is crucial for robots that act in real-world environments, as autonomous systems need to see and understand the world around them to act properly. Panoptic segmentation provides an interpretation of the scene by computing a pixelwise semantic label together with instance IDs. In this paper, we address panoptic segmentation using RGB-D data of indoor scenes. We propose a novel encoder-decoder neural network that processes RGB and depth separately through two encoders. The features of the individual encoders are progressively merged at different resolutions, such that the RGB features are enhanced using complementary depth information. We propose a novel merging approach called ResidualExcite, which reweighs each entry of the feature map according to its importance. With our double-encoder architecture, we are robust to missing cues. In particular, the same model can train and infer on RGB-D, RGB-only, and depth-only input data, without the need to train specialized models. We evaluate our method on publicly available datasets and show that our approach achieves superior results compared to other common approaches for panoptic segmentation.

Gianmarco Roggiolani, Federico Magistri, Tiziano Guadagnino et al.

Agricultural robots have the prospect to enable more efficient and sustainable agricultural production of food, feed, and fiber. Perception of crops and weeds is a central component of agricultural robots that aim to monitor fields and assess the plants as well as their growth stage in an automatic manner. Semantic perception mostly relies on deep learning using supervised approaches, which require time and qualified workers to label fairly large amounts of data. In this paper, we look into the problem of reducing the amount of labels without compromising the final segmentation performance. For robots operating in the field, pre-training networks in a supervised way is already a popular method to reduce the number of required labeled images. We investigate the possibility of pre-training in a self-supervised fashion using data from the target domain. To better exploit this data, we propose a set of domain-specific augmentation strategies. We evaluate our pre-training on semantic segmentation and leaf instance segmentation, two important tasks in our domain. The experimental results suggest that pre-training with domain-specific data paired with our data augmentation strategy leads to superior performance compared to commonly used pre-trainings. Furthermore, the pre-trained networks obtain similar performance to the fully supervised with less labeled data.

Federico Magistri, Thomas Läbe, Elias Marks et al.

As the world population is expected to reach 10 billion by 2050, our agricultural production system needs to double its productivity despite a decline of human workforce in the agricultural sector. Autonomous robotic systems are one promising pathway to increase productivity by taking over labor-intensive manual tasks like fruit picking. To be effective, such systems need to monitor and interact with plants and fruits precisely, which is challenging due to the cluttered nature of agricultural environments causing, for example, strong occlusions. Thus, being able to estimate the complete 3D shapes of objects in presence of occlusions is crucial for automating operations such as fruit harvesting. In this paper, we propose the first publicly available 3D shape completion dataset for agricultural vision systems. We provide an RGB-D dataset for estimating the 3D shape of fruits. Specifically, our dataset contains RGB-D frames of single sweet peppers in lab conditions but also in a commercial greenhouse. For each fruit, we additionally collected high-precision point clouds that we use as ground truth. For acquiring the ground truth shape, we developed a measuring process that allows us to record data of real sweet pepper plants, both in the lab and in the greenhouse with high precision, and determine the shape of the sensed fruits. We release our dataset, consisting of almost 7,000 RGB-D frames belonging to more than 100 different fruits. We provide segmented RGB-D frames, with camera intrinsics to easily obtain colored point clouds, together with the corresponding high-precision, occlusion-free point clouds obtained with a high-precision laser scanner. We additionally enable evaluation of shape completion approaches on a hidden test set through a public challenge on a benchmark server.

Apoorva Vashisth, Julius Rückin, Federico Magistri et al.

Autonomous robots are often employed for data collection due to their efficiency and low labour costs. A key task in robotic data acquisition is planning paths through an initially unknown environment to collect observations given platform-specific resource constraints, such as limited battery life. Adaptive online path planning in 3D environments is challenging due to the large set of valid actions and the presence of unknown occlusions. To address these issues, we propose a novel deep reinforcement learning approach for adaptively replanning robot paths to map targets of interest in unknown 3D environments. A key aspect of our approach is a dynamically constructed graph that restricts planning actions local to the robot, allowing us to react to newly discovered static obstacles and targets of interest. For replanning, we propose a new reward function that balances between exploring the unknown environment and exploiting online-discovered targets of interest. Our experiments show that our method enables more efficient target discovery compared to state-of-the-art learning and non-learning baselines. We also showcase our approach for orchard monitoring using an unmanned aerial vehicle in a photorealistic simulator. We open-source our code and model at: https://github.com/dmar-bonn/ipp-rl-3d.

Matteo Sodano, Federico Magistri, Jens Behley et al.

Perception is a key building block of autonomously acting vision systems such as autonomous vehicles. It is crucial that these systems are able to understand their surroundings in order to operate safely and robustly. Additionally, autonomous systems deployed in unconstrained real-world scenarios must be able of dealing with novel situations and object that have never been seen before. In this article, we tackle the problem of open-world panoptic segmentation, i.e., the task of discovering new semantic categories and new object instances at test time, while enforcing consistency among the categories that we incrementally discover. We propose Con2MAV, an approach for open-world panoptic segmentation that extends our previous work, ContMAV, which was developed for open-world semantic segmentation. Through extensive experiments across multiple datasets, we show that our model achieves state-of-the-art results on open-world segmentation tasks, while still performing competitively on the known categories. We will open-source our implementation upon acceptance. Additionally, we propose PANIC (Panoptic ANomalies In Context), a benchmark for evaluating open-world panoptic segmentation in autonomous driving scenarios. This dataset, recorded with a multi-modal sensor suite mounted on a car, provides high-quality, pixel-wise annotations of anomalous objects at both semantic and instance level. Our dataset contains 800 images, with more than 50 unknown classes, i.e., classes that do not appear in the training set, and 4000 object instances, making it an extremely challenging dataset for open-world segmentation tasks in the autonomous driving scenario. We provide competitions for multiple open-world tasks on a hidden test set. Our dataset and competitions are available at https://www.ipb.uni-bonn.de/data/panic.

Matteo Sodano, Federico Magistri, Elias Marks et al.

Crop yield estimation is a relevant problem in agriculture, because an accurate yield estimate can support farmers' decisions on harvesting or precision intervention. Robots can help to automate this process. To do so, they need to be able to perceive the surrounding environment to identify target objects such as trees and plants. In this paper, we introduce a novel approach to address the problem of hierarchical panoptic segmentation of apple orchards on 3D data from different sensors. Our approach is able to simultaneously provide semantic segmentation, instance segmentation of trunks and fruits, and instance segmentation of trees (a trunk with its fruits). This allows us to identify relevant information such as individual plants, fruits, and trunks, and capture the relationship among them, such as precisely estimate the number of fruits associated to each tree in an orchard. To efficiently evaluate our approach for hierarchical panoptic segmentation, we provide a dataset designed specifically for this task. Our dataset is recorded in Bonn, Germany, in a real apple orchard with a variety of sensors, spanning from a terrestrial laser scanner to a RGB-D camera mounted on different robots platforms. The experiments show that our approach surpasses state-of-the-art approaches in 3D panoptic segmentation in the agricultural domain, while also providing full hierarchical panoptic segmentation. Our dataset is publicly available at https://www.ipb.uni-bonn.de/data/hops/. The open-source implementation of our approach is available at https://github.com/PRBonn/hapt3D.

Matteo Sodano, Federico Magistri, Lucas Nunes et al.

Interpreting camera data is key for autonomously acting systems, such as autonomous vehicles. Vision systems that operate in real-world environments must be able to understand their surroundings and need the ability to deal with novel situations. This paper tackles open-world semantic segmentation, i.e., the variant of interpreting image data in which objects occur that have not been seen during training. We propose a novel approach that performs accurate closed-world semantic segmentation and, at the same time, can identify new categories without requiring any additional training data. Our approach additionally provides a similarity measure for every newly discovered class in an image to a known category, which can be useful information in downstream tasks such as planning or mapping. Through extensive experiments, we show that our model achieves state-of-the-art results on classes known from training data as well as for anomaly segmentation and can distinguish between different unknown classes.

Julius Rückin, Federico Magistri, Cyrill Stachniss et al.

Semantic segmentation enables robots to perceive and reason about their environments beyond geometry. Most of such systems build upon deep learning approaches. As autonomous robots are commonly deployed in initially unknown environments, pre-training on static datasets cannot always capture the variety of domains and limits the robot's perception performance during missions. Recently, self-supervised and fully supervised active learning methods emerged to improve a robot's vision. These approaches rely on large in-domain pre-training datasets or require substantial human labelling effort. We propose a planning method for semi-supervised active learning of semantic segmentation that substantially reduces human labelling requirements compared to fully supervised approaches. We leverage an adaptive map-based planner guided towards the frontiers of unexplored space with high model uncertainty collecting training data for human labelling. A key aspect of our approach is to combine the sparse high-quality human labels with pseudo labels automatically extracted from highly certain environment map areas. Experimental results show that our method reaches segmentation performance close to fully supervised approaches with drastically reduced human labelling effort while outperforming self-supervised approaches.

Elias Marks, Jonas Bömer, Federico Magistri et al.

Agricultural production is facing severe challenges in the next decades induced by climate change and the need for sustainability, reducing its impact on the environment. Advancements in field management through non-chemical weeding by robots in combination with monitoring of crops by autonomous unmanned aerial vehicles (UAVs) and breeding of novel and more resilient crop varieties are helpful to address these challenges. The analysis of plant traits, called phenotyping, is an essential activity in plant breeding, it however involves a great amount of manual labor. With this paper, we address the problem of automatic fine-grained organ-level geometric analysis needed for precision phenotyping. As the availability of real-world data in this domain is relatively scarce, we propose a novel dataset that was acquired using UAVs capturing high-resolution images of a real breeding trial containing 48 plant varieties and therefore covering great morphological and appearance diversity. This enables the development of approaches for autonomous phenotyping that generalize well to different varieties. Based on overlapping high-resolution images from multiple viewing angles, we compute photogrammetric dense point clouds and provide detailed and accurate point-wise labels for plants, leaves, and salient points as the tip and the base. Additionally, we include measurements of phenotypic traits performed by experts from the German Federal Plant Variety Office on the real plants, allowing the evaluation of new approaches not only on segmentation and keypoint detection but also directly on the downstream tasks. The provided labeled point clouds enable fine-grained plant analysis and support further progress in the development of automatic phenotyping approaches, but also enable further research in surface reconstruction, point cloud completion, and semantic interpretation of point clouds.

Daniel Fusaro, Federico Magistri, Jens Behley et al.

Accurate and consistent fruit monitoring over time is a key step toward automated agricultural production systems. However, this task is inherently difficult due to variations in fruit size, shape, occlusion, orientation, and the dynamic nature of orchards where fruits may appear or disappear between observations. In this article, we propose a novel method for fruit instance segmentation and re-identification on 3D terrestrial point clouds collected over time. Our approach directly operates on dense colored point clouds, capturing fine-grained 3D spatial detail. We segment individual fruits using a learning-based instance segmentation method applied directly to the point cloud. For each segmented fruit, we extract a compact and discriminative descriptor using a 3D sparse convolutional neural network. To track fruits across different times, we introduce an attention-based matching network that associates fruits with their counterparts from previous sessions. Matching is performed using a probabilistic assignment scheme, selecting the most likely associations across time. We evaluate our approach on real-world datasets of strawberries and apples, demonstrating that it outperforms existing methods in both instance segmentation and temporal re-identification, enabling robust and precise fruit monitoring across complex and dynamic orchard environments.

Arun N. Sivakumar, Federico Magistri, Mateus V. Gasparino et al.

Under-canopy agricultural robots can enable various applications like precise monitoring, spraying, weeding, and plant manipulation tasks throughout the growing season. Autonomous navigation under the canopy is challenging due to the degradation in accuracy of RTK-GPS and the large variability in the visual appearance of the scene over time. In prior work, we developed a supervised learning-based perception system with semantic keypoint representation and deployed this in various field conditions. A large number of failures of this system can be attributed to the inability of the perception model to adapt to the domain shift encountered during deployment. In this paper, we propose a self-supervised online adaptation method for adapting the semantic keypoint representation using a visual foundational model, geometric prior, and pseudo labeling. Our preliminary experiments show that with minimal data and fine-tuning of parameters, the keypoint prediction model trained with labels on the source domain can be adapted in a self-supervised manner to various challenging target domains onboard the robot computer using our method. This can enable fully autonomous row-following capability in under-canopy robots across fields and crops without requiring human intervention.

Gianmarco Roggiolani, Federico Magistri, Tiziano Guadagnino et al.

Crops for food, feed, fiber, and fuel are key natural resources for our society. Monitoring plants and measuring their traits is an important task in agriculture often referred to as plant phenotyping. Traditionally, this task is done manually, which is time- and labor-intensive. Robots can automate phenotyping providing reproducible and high-frequency measurements. Today's perception systems use deep learning to interpret these measurements, but require a substantial amount of annotated data to work well. Obtaining such labels is challenging as it often requires background knowledge on the side of the labelers. This paper addresses the problem of reducing the labeling effort required to perform leaf instance segmentation on 3D point clouds, which is a first step toward phenotyping in 3D. Separating all leaves allows us to count them and compute relevant traits as their areas, lengths, and widths. We propose a novel self-supervised task-specific pre-training approach to initialize the backbone of a network for leaf instance segmentation. We also introduce a novel automatic postprocessing that considers the difficulty of correctly segmenting the points close to the stem, where all the leaves petiole overlap. The experiments presented in this paper suggest that our approach boosts the performance over all the investigated scenarios. We also evaluate the embeddings to assess the quality of the fully unsupervised approach and see a higher performance of our domain-specific postprocessing.

Felix Stache, Jonas Westheider, Federico Magistri et al.

In this paper, we address the problem of adaptive path planning for accurate semantic segmentation of terrain using unmanned aerial vehicles (UAVs). The usage of UAVs for terrain monitoring and remote sensing is rapidly gaining momentum due to their high mobility, low cost, and flexible deployment. However, a key challenge is planning missions to maximize the value of acquired data in large environments given flight time limitations. To address this, we propose an online planning algorithm which adapts the UAV paths to obtain high-resolution semantic segmentations necessary in areas on the terrain with fine details as they are detected in incoming images. This enables us to perform close inspections at low altitudes only where required, without wasting energy on exhaustive mapping at maximum resolution. A key feature of our approach is a new accuracy model for deep learning-based architectures that captures the relationship between UAV altitude and semantic segmentation accuracy. We evaluate our approach on the application of crop/weed segmentation in precision agriculture using real-world field data.