Murat Kocaoglu

Shanyun Gao, Raghavendra Addanki, Tong Yu et al.

Discovering causal relations from observational time series without making the stationary assumption is a significant challenge. In practice, this challenge is common in many areas, such as retail sales, transportation systems, and medical science. Here, we consider this problem for a class of non-stationary time series. The structural causal model (SCM) of this type of time series, called the semi-stationary time series, exhibits that a finite number of different causal mechanisms occur sequentially and periodically across time. This model holds considerable practical utility because it can represent periodicity, including common occurrences such as seasonality and diurnal variation. We propose a constraint-based, non-parametric algorithm for discovering causal relations in this setting. The resulting algorithm, PCMCI$_Ω$, can capture the alternating and recurring changes in the causal mechanisms and then identify the underlying causal graph with conditional independence (CI) tests. We show that this algorithm is sound in identifying causal relations on discrete time series. We validate the algorithm with extensive experiments on continuous and discrete simulated data. We also apply our algorithm to a real-world climate dataset.

Shanyun Gao, Raghavendra Addanki, Tong Yu et al.

Change point detection in time series aims to identify moments when the probability distribution of time series changes. It is widely applied in many areas, such as human activity sensing and medical science. In the context of multivariate time series, this typically involves examining the joint distribution of multiple variables: If the distribution of any one variable changes, the entire time series undergoes a distribution shift. However, in practical applications, we may be interested only in certain components of the time series, exploring abrupt changes in their distributions while accounting for the presence of other components. Here, assuming an underlying structural causal model that governs the time-series data generation, we address this task by proposing a two-stage non-parametric algorithm that first learns parts of the causal structure through constraint-based discovery methods, and then employs conditional relative Pearson divergence estimation to identify the change points. The conditional relative Pearson divergence quantifies the distribution difference between consecutive segments in the time series, while the causal discovery method allows a focus on the causal mechanism, facilitating access to independent and identically distributed (IID) samples. Theoretically, the typical assumption of samples being IID in conventional change point detection methods can be relaxed based on the Causal Markov Condition. Through experiments on both synthetic and real-world datasets, we validate the correctness and utility of our approach.

Chandler Squires, Sara Magliacane, Kristjan Greenewald et al.

A growing body of work has begun to study intervention design for efficient structure learning of causal directed acyclic graphs (DAGs). A typical setting is a causally sufficient setting, i.e. a system with no latent confounders, selection bias, or feedback, when the essential graph of the observational equivalence class (EC) is given as an input and interventions are assumed to be noiseless. Most existing works focus on worst-case or average-case lower bounds for the number of interventions required to orient a DAG. These worst-case lower bounds only establish that the largest clique in the essential graph could make it difficult to learn the true DAG. In this work, we develop a universal lower bound for single-node interventions that establishes that the largest clique is always a fundamental impediment to structure learning. Specifically, we present a decomposition of a DAG into independently orientable components through directed clique trees and use it to prove that the number of single-node interventions necessary to orient any DAG in an EC is at least the sum of half the size of the largest cliques in each chain component of the essential graph. Moreover, we present a two-phase intervention design algorithm that, under certain conditions on the chordal skeleton, matches the optimal number of interventions up to a multiplicative logarithmic factor in the number of maximal cliques. We show via synthetic experiments that our algorithm can scale to much larger graphs than most of the related work and achieves better worst-case performance than other scalable approaches. A code base to recreate these results can be found at https://github.com/csquires/dct-policy

Spencer Compton, Kristjan Greenewald, Dmitriy Katz et al.

Entropic causal inference is a recent framework for learning the causal graph between two variables from observational data by finding the information-theoretically simplest structural explanation of the data, i.e., the model with smallest entropy. In our work, we first extend the causal graph identifiability result in the two-variable setting under relaxed assumptions. We then show the first identifiability result using the entropic approach for learning causal graphs with more than two nodes. Our approach utilizes the property that ancestrality between a source node and its descendants can be determined using the bivariate entropic tests. We provide a sound sequential peeling algorithm for general graphs that relies on this property. We also propose a heuristic algorithm for small graphs that shows strong empirical performance. We rigorously evaluate the performance of our algorithms on synthetic data generated from a variety of models, observing improvement over prior work. Finally we test our algorithms on real-world datasets.

Md Musfiqur Rahman, Murat Kocaoglu

Sound and complete algorithms have been proposed to compute identifiable causal queries using the causal structure and data. However, most of these algorithms assume accurate estimation of the data distribution, which is impractical for high-dimensional variables such as images. On the other hand, modern deep generative architectures can be trained to sample from high-dimensional distributions. However, training these networks are typically very costly. Thus, it is desirable to leverage pre-trained models to answer causal queries using such high-dimensional data. To address this, we propose modular training of deep causal generative models that not only makes learning more efficient, but also allows us to utilize large, pre-trained conditional generative models. To the best of our knowledge, our algorithm, Modular-DCM is the first algorithm that, given the causal structure, uses adversarial training to learn the network weights, and can make use of pre-trained models to provably sample from any identifiable causal query in the presence of latent confounders. With extensive experiments on the Colored-MNIST dataset, we demonstrate that our algorithm outperforms the baselines. We also show our algorithm's convergence on the COVIDx dataset and its utility with a causal invariant prediction problem on CelebA-HQ.

Md Musfiqur Rahman, Matt Jordan, Murat Kocaoglu

Causal inference from observational data plays critical role in many applications in trustworthy machine learning. While sound and complete algorithms exist to compute causal effects, many of them assume access to conditional likelihoods, which is difficult to estimate for high-dimensional (particularly image) data. Researchers have alleviated this issue by simulating causal relations with neural models. However, when we have high-dimensional variables in the causal graph along with some unobserved confounders, no existing work can effectively sample from the un/conditional interventional distributions. In this work, we show how to sample from any identifiable interventional distribution given an arbitrary causal graph through a sequence of push-forward computations of conditional generative models, such as diffusion models. Our proposed algorithm follows the recursive steps of the existing likelihood-based identification algorithms to train a set of feed-forward models, and connect them in a specific way to sample from the desired distribution. We conduct experiments on a Colored MNIST dataset having both the treatment ($X$) and the target variables ($Y$) as images and sample from $P(y|do(x))$. Our algorithm also enables us to conduct a causal analysis to evaluate spurious correlations among input features of generative models pre-trained on the CelebA dataset. Finally, we generate high-dimensional interventional samples from the MIMIC-CXR dataset involving text and image variables.

Spencer Compton, Murat Kocaoglu, Kristjan Greenewald et al.

Entropic causal inference is a framework for inferring the causal direction between two categorical variables from observational data. The central assumption is that the amount of unobserved randomness in the system is not too large. This unobserved randomness is measured by the entropy of the exogenous variable in the underlying structural causal model, which governs the causal relation between the observed variables. Kocaoglu et al. conjectured that the causal direction is identifiable when the entropy of the exogenous variable is not too large. In this paper, we prove a variant of their conjecture. Namely, we show that for almost all causal models where the exogenous variable has entropy that does not scale with the number of states of the observed variables, the causal direction is identifiable from observational data. We also consider the minimum entropy coupling-based algorithmic approach presented by Kocaoglu et al., and for the first time demonstrate algorithmic identifiability guarantees using a finite number of samples. We conduct extensive experiments to evaluate the robustness of the method to relaxing some of the assumptions in our theory and demonstrate that both the constant-entropy exogenous variable and the no latent confounder assumptions can be relaxed in practice. We also empirically characterize the number of observational samples needed for causal identification. Finally, we apply the algorithm on Tuebingen cause-effect pairs dataset.

Erik M. Lindgren, Murat Kocaoglu, Alexandros G. Dimakis et al.

We consider the minimum cost intervention design problem: Given the essential graph of a causal graph and a cost to intervene on a variable, identify the set of interventions with minimum total cost that can learn any causal graph with the given essential graph. We first show that this problem is NP-hard. We then prove that we can achieve a constant factor approximation to this problem with a greedy algorithm. We then constrain the sparsity of each intervention. We develop an algorithm that returns an intervention design that is nearly optimal in terms of size for sparse graphs with sparse interventions and we discuss how to use it when there are costs on the vertices.

Murat Kocaoglu, Sanjay Shakkottai, Alexandros G. Dimakis et al.

We study the problem of discovering the simplest latent variable that can make two observed discrete variables conditionally independent. The minimum entropy required for such a latent is known as common entropy in information theory. We extend this notion to Renyi common entropy by minimizing the Renyi entropy of the latent variable. To efficiently compute common entropy, we propose an iterative algorithm that can be used to discover the trade-off between the entropy of the latent variable and the conditional mutual information of the observed variables. We show two applications of common entropy in causal inference: First, under the assumption that there are no low-entropy mediators, it can be used to distinguish causation from spurious correlation among almost all joint distributions on simple causal graphs with two observed variables. Second, common entropy can be used to improve constraint-based methods such as PC or FCI algorithms in the small-sample regime, where these methods are known to struggle. We propose a modification to these constraint-based methods to assess if a separating set found by these algorithms is valid using common entropy. We finally evaluate our algorithms on synthetic and real data to establish their performance.

Karthikeyan Shanmugam, Murat Kocaoglu, Alexandros G. Dimakis et al.

We consider support recovery in the quadratic logistic regression setting - where the target depends on both p linear terms $x_i$ and up to $p^2$ quadratic terms $x_i x_j$. Quadratic terms enable prediction/modeling of higher-order effects between features and the target, but when incorporated naively may involve solving a very large regression problem. We consider the sparse case, where at most $s$ terms (linear or quadratic) are non-zero, and provide a new faster algorithm. It involves (a) identifying the weak support (i.e. all relevant variables) and (b) standard logistic regression optimization only on these chosen variables. The first step relies on a novel insight about correlation tests in the presence of non-linearity, and takes $O(pn)$ time for $n$ samples - giving potentially huge computational gains over the naive approach. Motivated by insights from the boolean case, we propose a non-linear correlation test for non-binary finite support case that involves hashing a variable and then correlating with the output variable. We also provide experimental results to demonstrate the effectiveness of our methods.

Murat Kocaoglu, Alexandros G. Dimakis, Sriram Vishwanath

We consider the problem of learning a causal graph over a set of variables with interventions. We study the cost-optimal causal graph learning problem: For a given skeleton (undirected version of the causal graph), design the set of interventions with minimum total cost, that can uniquely identify any causal graph with the given skeleton. We show that this problem is solvable in polynomial time. Later, we consider the case when the number of interventions is limited. For this case, we provide polynomial time algorithms when the skeleton is a tree or a clique tree. For a general chordal skeleton, we develop an efficient greedy algorithm, which can be improved when the causal graph skeleton is an interval graph.

Murat Kocaoglu, Alexandros G. Dimakis, Sriram Vishwanath et al.

We study the problem of identifying the causal relationship between two discrete random variables from observational data. We recently proposed a novel framework called entropic causality that works in a very general functional model but makes the assumption that the unobserved exogenous variable has small entropy in the true causal direction. This framework requires the solution of a minimum entropy coupling problem: Given marginal distributions of m discrete random variables, each on n states, find the joint distribution with minimum entropy, that respects the given marginals. This corresponds to minimizing a concave function of nm variables over a convex polytope defined by nm linear constraints, called a transportation polytope. Unfortunately, it was recently shown that this minimum entropy coupling problem is NP-hard, even for 2 variables with n states. Even representing points (joint distributions) over this space can require exponential complexity (in n, m) if done naively. In our recent work we introduced an efficient greedy algorithm to find an approximate solution for this problem. In this paper we analyze this algorithm and establish two results: that our algorithm always finds a local minimum and also is within an additive approximation error from the unknown global optimum.

Murat Kocaoglu, Alexandros G. Dimakis, Sriram Vishwanath et al.

We consider the problem of identifying the causal direction between two discrete random variables using observational data. Unlike previous work, we keep the most general functional model but make an assumption on the unobserved exogenous variable: Inspired by Occam's razor, we assume that the exogenous variable is simple in the true causal direction. We quantify simplicity using Rényi entropy. Our main result is that, under natural assumptions, if the exogenous variable has low $H_0$ entropy (cardinality) in the true direction, it must have high $H_0$ entropy in the wrong direction. We establish several algorithmic hardness results about estimating the minimum entropy exogenous variable. We show that the problem of finding the exogenous variable with minimum entropy is equivalent to the problem of finding minimum joint entropy given $n$ marginal distributions, also known as minimum entropy coupling problem. We propose an efficient greedy algorithm for the minimum entropy coupling problem, that for $n=2$ provably finds a local optimum. This gives a greedy algorithm for finding the exogenous variable with minimum $H_1$ (Shannon Entropy). Our greedy entropy-based causal inference algorithm has similar performance to the state of the art additive noise models in real datasets. One advantage of our approach is that we make no use of the values of random variables but only their distributions. Our method can therefore be used for causal inference for both ordinal and also categorical data, unlike additive noise models.

Rajat Sen, Karthikeyan Shanmugam, Murat Kocaoglu et al.

Motivated by online recommendation and advertising systems, we consider a causal model for stochastic contextual bandits with a latent low-dimensional confounder. In our model, there are $L$ observed contexts and $K$ arms of the bandit. The observed context influences the reward obtained through a latent confounder variable with cardinality $m$ ($m \ll L,K$). The arm choice and the latent confounder causally determines the reward while the observed context is correlated with the confounder. Under this model, the $L \times K$ mean reward matrix $\mathbf{U}$ (for each context in $[L]$ and each arm in $[K]$) factorizes into non-negative factors $\mathbf{A}$ ($L \times m$) and $\mathbf{W}$ ($m \times K$). This insight enables us to propose an $ε$-greedy NMF-Bandit algorithm that designs a sequence of interventions (selecting specific arms), that achieves a balance between learning this low-dimensional structure and selecting the best arm to minimize regret. Our algorithm achieves a regret of $\mathcal{O}\left(L\mathrm{poly}(m, \log K) \log T \right)$ at time $T$, as compared to $\mathcal{O}(LK\log T)$ for conventional contextual bandits, assuming a constant gap between the best arm and the rest for each context. These guarantees are obtained under mild sufficiency conditions on the factors that are weaker versions of the well-known Statistical RIP condition. We further propose a class of generative models that satisfy our sufficient conditions, and derive a lower bound of $\mathcal{O}\left(Km\log T\right)$. These are the first regret guarantees for online matrix completion with bandit feedback, when the rank is greater than one. We further compare the performance of our algorithm with the state of the art, on synthetic and real world data-sets.

Karthikeyan Shanmugam, Murat Kocaoglu, Alexandros G. Dimakis et al.

We consider the problem of learning causal networks with interventions, when each intervention is limited in size under Pearl's Structural Equation Model with independent errors (SEM-IE). The objective is to minimize the number of experiments to discover the causal directions of all the edges in a causal graph. Previous work has focused on the use of separating systems for complete graphs for this task. We prove that any deterministic adaptive algorithm needs to be a separating system in order to learn complete graphs in the worst case. In addition, we present a novel separating system construction, whose size is close to optimal and is arguably simpler than previous work in combinatorics. We also develop a novel information theoretic lower bound on the number of interventions that applies in full generality, including for randomized adaptive learning algorithms. For general chordal graphs, we derive worst case lower bounds on the number of interventions. Building on observations about induced trees, we give a new deterministic adaptive algorithm to learn directions on any chordal skeleton completely. In the worst case, our achievable scheme is an $α$-approximation algorithm where $α$ is the independence number of the graph. We also show that there exist graph classes for which the sufficient number of experiments is close to the lower bound. In the other extreme, there are graph classes for which the required number of experiments is multiplicatively $α$ away from our lower bound. In simulations, our algorithm almost always performs very close to the lower bound, while the approach based on separating systems for complete graphs is significantly worse for random chordal graphs.

Murat Kocaoglu, Karthikeyan Shanmugam, Alexandros G. Dimakis et al.

Let $f:\{-1,1\}^n$ be a polynomial with at most $s$ non-zero real coefficients. We give an algorithm for exactly reconstructing f given random examples from the uniform distribution on $\{-1,1\}^n$ that runs in time polynomial in $n$ and $2s$ and succeeds if the function satisfies the unique sign property: there is one output value which corresponds to a unique set of values of the participating parities. This sufficient condition is satisfied when every coefficient of f is perturbed by a small random noise, or satisfied with high probability when s parity functions are chosen randomly or when all the coefficients are positive. Learning sparse polynomials over the Boolean domain in time polynomial in $n$ and $2s$ is considered notoriously hard in the worst-case. Our result shows that the problem is tractable for almost all sparse polynomials. Then, we show an application of this result to hypergraph sketching which is the problem of learning a sparse (both in the number of hyperedges and the size of the hyperedges) hypergraph from uniformly drawn random cuts. We also provide experimental results on a real world dataset.