Yuqiao Liu

Yuqiao Liu, Haipeng Li, Yanan Sun et al.

Neural Architecture Search (NAS) is an automatic technique that can search for well-performed architectures for a specific task. Although NAS surpasses human-designed architecture in many fields, the high computational cost of architecture evaluation it requires hinders its development. A feasible solution is to directly evaluate some metrics in the initial stage of the architecture without any training. NAS without training (WOT) score is such a metric, which estimates the final trained accuracy of the architecture through the ability to distinguish different inputs in the activation layer. However, WOT score is not an atomic metric, meaning that it does not represent a fundamental indicator of the architecture. The contributions of this paper are in three folds. First, we decouple WOT into two atomic metrics which represent the distinguishing ability of the network and the number of activation units, and explore better combination rules named (Distinguishing Activation Score) DAS. We prove the correctness of decoupling theoretically and confirmed the effectiveness of the rules experimentally. Second, in order to improve the prediction accuracy of DAS to meet practical search requirements, we propose a fast training strategy. When DAS is used in combination with the fast training strategy, it yields more improvements. Third, we propose a dataset called Darts-training-bench (DTB), which fills the gap that no training states of architecture in existing datasets. Our proposed method has 1.04$\times$ - 1.56$\times$ improvements on NAS-Bench-101, Network Design Spaces, and the proposed DTB.

Dianxing Shi, Dingjie Fu, Yuqiao Liu et al.

Vision-Language Models (VLMs) have shown strong performance in zero-shot image classification tasks. However, existing methods, including Contrastive Language-Image Pre-training (CLIP), all rely on annotated text-to-image pairs for aligning visual and textual modalities. This dependency introduces substantial cost and accuracy requirement in preparing high-quality datasets. At the same time, processing data from two modes also requires dual-tower encoders for most models, which also hinders their lightweight. To address these limitations, we introduce a ``Contrastive Language-Image Pre-training via Large-Language-Model-based Generation (LGCLIP)" framework. LGCLIP leverages a Large Language Model (LLM) to generate class-specific prompts that guide a diffusion model in synthesizing reference images. Afterwards these generated images serve as visual prototypes, and the visual features of real images are extracted and compared with the visual features of these prototypes to achieve comparative prediction. By optimizing prompt generation through the LLM and employing only a visual encoder, LGCLIP remains lightweight and efficient. Crucially, our framework requires only class labels as input during whole experimental procedure, eliminating the need for manually annotated image-text pairs and extra pre-processing. Experimental results validate the feasibility and efficiency of LGCLIP, demonstrating great performance in zero-shot classification tasks and establishing a novel paradigm for classification.

Minghao Yang, Zhi-An Huang, Zhihang Zheng et al.

Hi-C technology measures genome-wide interaction frequencies, providing a powerful tool for studying the 3D genomic structure within the nucleus. However, high sequencing costs and technical challenges often result in Hi-C data with limited coverage, leading to imprecise estimates of chromatin interaction frequencies. To address this issue, we present a novel deep learning-based method HiCMamba to enhance the resolution of Hi-C contact maps using a state space model. We adopt the UNet-based auto-encoder architecture to stack the proposed holistic scan block, enabling the perception of both global and local receptive fields at multiple scales. Experimental results demonstrate that HiCMamba outperforms state-of-the-art methods while significantly reducing computational resources. Furthermore, the 3D genome structures, including topologically associating domains (TADs) and loops, identified in the contact maps recovered by HiCMamba are validated through associated epigenomic features. Our work demonstrates the potential of a state space model as foundational frameworks in the field of Hi-C resolution enhancement.

Yuhan Fang, Yuqiao Liu, Yanan Sun

Collaborative Filtering (CF) is widely used in recommender systems to model user-item interactions. With the great success of Deep Neural Networks (DNNs) in various fields, advanced works recently have proposed several DNN-based models for CF, which have been proven effective. However, the neural networks are all designed manually. As a consequence, it requires the designers to develop expertise in both CF and DNNs, which limits the application of deep learning methods in CF and the accuracy of recommended results. In this paper, we introduce the genetic algorithm into the process of designing DNNs. By means of genetic operations like crossover, mutation, and environmental selection strategy, the architectures and the connection weights initialization of the DNNs can be designed automatically. We conduct extensive experiments on two benchmark datasets. The results demonstrate the proposed algorithm outperforms several manually designed state-of-the-art neural networks.

Xiangning Xie, Yuqiao Liu, Yanan Sun et al.

Neural architecture search (NAS), which automatically designs the architectures of deep neural networks, has achieved breakthrough success over many applications in the past few years. Among different classes of NAS methods, evolutionary computation based NAS (ENAS) methods have recently gained much attention. Unfortunately, the issues of fair comparisons and efficient evaluations have hindered the development of ENAS. The current benchmark architecture datasets designed for fair comparisons only provide the datasets, not the ENAS algorithms or the platform to run the algorithms. The existing efficient evaluation methods are either not suitable for the population-based ENAS algorithm or are too complex to use. This paper develops a platform named BenchENAS to address these issues. BenchENAS aims to achieve fair comparisons by running different algorithms in the same environment and with the same settings. To achieve efficient evaluation in a common lab environment, BenchENAS designs a parallel component and a cache component with high maintainability. Furthermore, BenchENAS is easy to install and highly configurable and modular, which brings benefits in good usability and easy extensibility. The paper conducts efficient comparison experiments on eight ENAS algorithms with high GPU utilization on this platform. The experiments validate that the fair comparison issue does exist, and BenchENAS can alleviate this issue. A website has been built to promote BenchENAS at https://benchenas.com, where interested researchers can obtain the source code and document of BenchENAS for free.

Yuqiao Liu, Yehui Tang, Yanan Sun

Neural Architecture Search (NAS) can automatically design well-performed architectures of Deep Neural Networks (DNNs) for the tasks at hand. However, one bottleneck of NAS is the prohibitively computational cost largely due to the expensive performance evaluation. The neural predictors can directly estimate the performance without any training of the DNNs to be evaluated, thus have drawn increasing attention from researchers. Despite their popularity, they also suffer a severe limitation: the shortage of annotated DNN architectures for effectively training the neural predictors. In this paper, we proposed Homogeneous Architecture Augmentation for Neural Predictor (HAAP) of DNN architectures to address the issue aforementioned. Specifically, a homogeneous architecture augmentation algorithm is proposed in HAAP to generate sufficient training data taking the use of homogeneous representation. Furthermore, the one-hot encoding strategy is introduced into HAAP to make the representation of DNN architectures more effective. The experiments have been conducted on both NAS-Benchmark-101 and NAS-Bench-201 dataset. The experimental results demonstrate that the proposed HAAP algorithm outperforms the state of the arts compared, yet with much less training data. In addition, the ablation studies on both benchmark datasets have also shown the universality of the homogeneous architecture augmentation.

Yuqiao Liu, Yudan Wang, Ying Zhao et al.

Transgender community is experiencing a huge disparity in mental health conditions compared with the general population. Interpreting the social medial data posted by transgender people may help us understand the sentiments of these sexual minority groups better and apply early interventions. In this study, we manually categorize 300 social media comments posted by transgender people to the sentiment of negative, positive, and neutral. 5 machine learning algorithms and 2 deep neural networks are adopted to build sentiment analysis classifiers based on the annotated data. Results show that our annotations are reliable with a high Cohen's Kappa score over 0.8 across all three classes. LSTM model yields an optimal performance of accuracy over 0.85 and AUC of 0.876. Our next step will focus on using advanced natural language processing algorithms on a larger annotated dataset.

Yuqiao Liu, Yanan Sun, Bing Xue et al.

Deep Neural Networks (DNNs) have achieved great success in many applications. The architectures of DNNs play a crucial role in their performance, which is usually manually designed with rich expertise. However, such a design process is labour intensive because of the trial-and-error process, and also not easy to realize due to the rare expertise in practice. Neural Architecture Search (NAS) is a type of technology that can design the architectures automatically. Among different methods to realize NAS, Evolutionary Computation (EC) methods have recently gained much attention and success. Unfortunately, there has not yet been a comprehensive summary of the EC-based NAS algorithms. This paper reviews over 200 papers of most recent EC-based NAS methods in light of the core components, to systematically discuss their design principles as well as justifications on the design. Furthermore, current challenges and issues are also discussed to identify future research in this emerging field.

Yuqiao Liu, Yanan Sun, Bing Xue et al.

Hyperspectral images (HSIs) are susceptible to various noise factors leading to the loss of information, and the noise restricts the subsequent HSIs object detection and classification tasks. In recent years, learning-based methods have demonstrated their superior strengths in denoising the HSIs. Unfortunately, most of the methods are manually designed based on the extensive expertise that is not necessarily available to the users interested. In this paper, we propose a novel algorithm to automatically build an optimal Convolutional Neural Network (CNN) to effectively denoise HSIs. Particularly, the proposed algorithm focuses on the architectures and the initialization of the connection weights of the CNN. The experiments of the proposed algorithm have been well-designed and compared against the state-of-the-art peer competitors, and the experimental results demonstrate the competitive performance of the proposed algorithm in terms of the different evaluation metrics, visual assessments, and the computational complexity.