Meihan Liu

Meihan Liu, Zhen Zhang, Jiachen Tang et al.

Unsupervised Graph Domain Adaptation (UGDA) involves the transfer of knowledge from a label-rich source graph to an unlabeled target graph under domain discrepancies. Despite the proliferation of methods designed for this emerging task, the lack of standard experimental settings and fair performance comparisons makes it challenging to understand which and when models perform well across different scenarios. To fill this gap, we present the first comprehensive benchmark for unsupervised graph domain adaptation named GDABench, which encompasses 16 algorithms across 5 datasets with 74 adaptation tasks. Through extensive experiments, we observe that the performance of current UGDA models varies significantly across different datasets and adaptation scenarios. Specifically, we recognize that when the source and target graphs face significant distribution shifts, it is imperative to formulate strategies to effectively address and mitigate graph structural shifts. We also find that with appropriate neighbourhood aggregation mechanisms, simple GNN variants can even surpass state-of-the-art UGDA baselines. To facilitate reproducibility, we have developed an easy-to-use library PyGDA for training and evaluating existing UGDA methods, providing a standardized platform in this community. Our source codes and datasets can be found at: https://github.com/pygda-team/pygda.

Ming Gu, Gaoming Yang, Sheng Zhou et al.

Graph clustering is a fundamental task in graph analysis, and recent advances in utilizing graph neural networks (GNNs) have shown impressive results. Despite the success of existing GNN-based graph clustering methods, they often overlook the quality of graph structure, which is inherent in real-world graphs due to their sparse and multifarious nature, leading to subpar performance. Graph structure learning allows refining the input graph by adding missing links and removing spurious connections. However, previous endeavors in graph structure learning have predominantly centered around supervised settings, and cannot be directly applied to our specific clustering tasks due to the absence of ground-truth labels. To bridge the gap, we propose a novel method called \textbf{ho}mophily-enhanced structure \textbf{le}arning for graph clustering (HoLe). Our motivation stems from the observation that subtly enhancing the degree of homophily within the graph structure can significantly improve GNNs and clustering outcomes. To realize this objective, we develop two clustering-oriented structure learning modules, i.e., hierarchical correlation estimation and cluster-aware sparsification. The former module enables a more accurate estimation of pairwise node relationships by leveraging guidance from latent and clustering spaces, while the latter one generates a sparsified structure based on the similarity matrix and clustering assignments. Additionally, we devise a joint optimization approach alternating between training the homophily-enhanced structure learning and GNN-based clustering, thereby enforcing their reciprocal effects. Extensive experiments on seven benchmark datasets of various types and scales, across a range of clustering metrics, demonstrate the superiority of HoLe against state-of-the-art baselines.

Ming Gu, Zhuonan Zheng, Sheng Zhou et al.

Graph Neural Networks (GNNs) have achieved great success but are often considered to be challenged by varying levels of homophily in graphs. Recent \textit{empirical} studies have surprisingly shown that homophilic GNNs can perform well across datasets of different homophily levels with proper hyperparameter tuning, but the underlying theory and effective architectures remain unclear. To advance GNN universality across varying homophily, we theoretically revisit GNN message passing and uncover a novel \textit{smoothness-generalization dilemma}, where increasing hops inevitably enhances smoothness at the cost of generalization. This dilemma hinders learning in high-order homophilic neighborhoods and all heterophilic ones, where generalization is critical due to complex neighborhood class distributions that are sensitive to shifts induced by noise or sparsity. To address this, we introduce the Inceptive Graph Neural Network (IGNN) built on three simple yet effective design principles, which alleviate the dilemma by enabling distinct hop-wise generalization alongside improved overall generalization with adaptive smoothness. Benchmarking against 30 baselines demonstrates IGNN's superiority and reveals notable universality in certain homophilic GNN variants. Our code and datasets are available at \href{https://github.com/galogm/IGNN}{https://github.com/galogm/IGNN}.

Zhen Zhang, Meihan Liu, Bingsheng He

Graph domain adaptation has emerged as a promising approach to facilitate knowledge transfer across different domains. Recently, numerous models have been proposed to enhance their generalization capabilities in this field. However, there is still no unified library that brings together existing techniques and simplifies their implementation. To fill this gap, we introduce PyGDA, an open-source Python library tailored for graph domain adaptation. As the first comprehensive library in this area, PyGDA covers more than 20 widely used graph domain adaptation methods together with different types of graph datasets. Specifically, PyGDA offers modular components, enabling users to seamlessly build custom models with a variety of commonly used utility functions. To handle large-scale graphs, PyGDA includes support for features such as sampling and mini-batch processing, ensuring efficient computation. In addition, PyGDA also includes comprehensive performance benchmarks and well-documented user-friendly API for both researchers and practitioners. To foster convenient accessibility, PyGDA is released under the MIT license at https://github.com/pygda-team/pygda, and the API documentation is https://pygda.readthedocs.io/en/stable/.

Meihan Liu, Zeyu Fang, Zhen Zhang et al.

Unsupervised Graph Domain Adaptation (UGDA) aims to transfer knowledge from a labelled source graph to an unlabelled target graph in order to address the distribution shifts between graph domains. Previous works have primarily focused on aligning data from the source and target graph in the representation space learned by graph neural networks (GNNs). However, the inherent generalization capability of GNNs has been largely overlooked. Motivated by our empirical analysis, we reevaluate the role of GNNs in graph domain adaptation and uncover the pivotal role of the propagation process in GNNs for adapting to different graph domains. We provide a comprehensive theoretical analysis of UGDA and derive a generalization bound for multi-layer GNNs. By formulating GNN Lipschitz for k-layer GNNs, we show that the target risk bound can be tighter by removing propagation layers in source graph and stacking multiple propagation layers in target graph. Based on the empirical and theoretical analysis mentioned above, we propose a simple yet effective approach called A2GNN for graph domain adaptation. Through extensive experiments on real-world datasets, we demonstrate the effectiveness of our proposed A2GNN framework.

Zhen Zhang, Meihan Liu, Anhui Wang et al.

Unsupervised Graph Domain Adaptation (UGDA) has emerged as a practical solution to transfer knowledge from a label-rich source graph to a completely unlabelled target graph. However, most methods require a labelled source graph to provide supervision signals, which might not be accessible in the real-world settings due to regulations and privacy concerns. In this paper, we explore the scenario of source-free unsupervised graph domain adaptation, which tries to address the domain adaptation problem without accessing the labelled source graph. Specifically, we present a novel paradigm called GraphCTA, which performs model adaptation and graph adaptation collaboratively through a series of procedures: (1) conduct model adaptation based on node's neighborhood predictions in target graph considering both local and global information; (2) perform graph adaptation by updating graph structure and node attributes via neighborhood contrastive learning; and (3) the updated graph serves as an input to facilitate the subsequent iteration of model adaptation, thereby establishing a collaborative loop between model adaptation and graph adaptation. Comprehensive experiments are conducted on various public datasets. The experimental results demonstrate that our proposed model outperforms recent source-free baselines by large margins.