Seung-Cheol Lee

Kishalay Das, Bidisha Samanta, Pawan Goyal et al.

In recent years, graph neural network (GNN) based approaches have emerged as a powerful technique to encode complex topological structure of crystal materials in an enriched representation space. These models are often supervised in nature and using the property-specific training data, learn relationship between crystal structure and different properties like formation energy, bandgap, bulk modulus, etc. Most of these methods require a huge amount of property-tagged data to train the system which may not be available for different properties. However, there is an availability of a huge amount of crystal data with its chemical composition and structural bonds. To leverage these untapped data, this paper presents CrysGNN, a new pre-trained GNN framework for crystalline materials, which captures both node and graph level structural information of crystal graphs using a huge amount of unlabelled material data. Further, we extract distilled knowledge from CrysGNN and inject into different state of the art property predictors to enhance their property prediction accuracy. We conduct extensive experiments to show that with distilled knowledge from the pre-trained model, all the SOTA algorithms are able to outperform their own vanilla version with good margins. We also observe that the distillation process provides a significant improvement over the conventional approach of finetuning the pre-trained model. We have released the pre-trained model along with the large dataset of 800K crystal graph which we carefully curated; so that the pretrained model can be plugged into any existing and upcoming models to enhance their prediction accuracy.

Kishalay Das, Pawan Goyal, Seung-Cheol Lee et al.

Machine Learning models have emerged as a powerful tool for fast and accurate prediction of different crystalline properties. Exiting state-of-the-art models rely on a single modality of crystal data i.e. crystal graph structure, where they construct multi-graph by establishing edges between nearby atoms in 3D space and apply GNN to learn materials representation. Thereby, they encode local chemical semantics around the atoms successfully but fail to capture important global periodic structural information like space group number, crystal symmetry, rotational information, etc, which influence different crystal properties. In this work, we leverage textual descriptions of materials to model global structural information into graph structure and learn a more robust and enriched representation of crystalline materials. To this effect, we first curate a textual dataset for crystalline material databases containing descriptions of each material. Further, we propose CrysMMNet, a simple multi-modal framework, which fuses both structural and textual representation together to generate a joint multimodal representation of crystalline materials. We conduct extensive experiments on two benchmark datasets across ten different properties to show that CrysMMNet outperforms existing state-of-the-art baseline methods with a good margin. We also observe that fusing the textual representation with crystal graph structure provides consistent improvement for all the SOTA GNN models compared to their own vanilla versions. We have shared the textual dataset, that we have curated for both the benchmark material databases, with the community for future use.

Subhojyoti Khastagir, Kishalay Das, Pawan Goyal et al.

Recent advances in generative modeling have shown significant promise in designing novel periodic crystal structures. Existing approaches typically rely on either large language models (LLMs) or equivariant denoising models, each with complementary strengths: LLMs excel at handling discrete atomic types but often struggle with continuous features such as atomic positions and lattice parameters, while denoising models are effective at modeling continuous variables but encounter difficulties in generating accurate atomic compositions. To bridge this gap, we propose CrysLLMGen, a hybrid framework that integrates an LLM with a diffusion model to leverage their complementary strengths for crystal material generation. During sampling, CrysLLMGen first employs a fine-tuned LLM to produce an intermediate representation of atom types, atomic coordinates, and lattice structure. While retaining the predicted atom types, it passes the atomic coordinates and lattice structure to a pre-trained equivariant diffusion model for refinement. Our framework outperforms state-of-the-art generative models across several benchmark tasks and datasets. Specifically, CrysLLMGen not only achieves a balanced performance in terms of structural and compositional validity but also generates more stable and novel materials compared to LLM-based and denoisingbased models Furthermore, CrysLLMGen exhibits strong conditional generation capabilities, effectively producing materials that satisfy user-defined constraints. Code is available at https://github.com/kdmsit/crysllmgen

Kishalay Das, Subhojyoti Khastagir, Pawan Goyal et al.

Equivariant diffusion models have emerged as the prevailing approach for generating novel crystal materials due to their ability to leverage the physical symmetries of periodic material structures. However, current models do not effectively learn the joint distribution of atom types, fractional coordinates, and lattice structure of the crystal material in a cohesive end-to-end diffusion framework. Also, none of these models work under realistic setups, where users specify the desired characteristics that the generated structures must match. In this work, we introduce TGDMat, a novel text-guided diffusion model designed for 3D periodic material generation. Our approach integrates global structural knowledge through textual descriptions at each denoising step while jointly generating atom coordinates, types, and lattice structure using a periodic-E(3)-equivariant graph neural network (GNN). Extensive experiments using popular datasets on benchmark tasks reveal that TGDMat outperforms existing baseline methods by a good margin. Notably, for the structure prediction task, with just one generated sample, TGDMat outperforms all baseline models, highlighting the importance of text-guided diffusion. Further, in the generation task, TGDMat surpasses all baselines and their text-fusion variants, showcasing the effectiveness of the joint diffusion paradigm. Additionally, incorporating textual knowledge reduces overall training and sampling computational overhead while enhancing generative performance when utilizing real-world textual prompts from experts.

Satadeep Bhattacharjee, Seung-Cheol Lee

The recently proposed physics-based framework by Huo and Johnson~\cite{huo2024capturing} models the attention mechanism of Large Language Models (LLMs) as an interacting two-body spin system, offering a first-principles explanation for phenomena like repetition and bias. Building on this hypothesis, we extract the complete Query-Key weight matrices from a production-grade GPT-2 model and derive the corresponding effective Hamiltonian for every attention head. From these Hamiltonians, we obtain analytic phase boundaries and logit gap criteria that predict which token should dominate the next-token distribution for a given context. A systematic evaluation on 144 heads across 20 factual-recall prompts reveals a strong negative correlation between the theoretical logit gaps and the model's empirical token rankings ($r\approx-0.70$, $p<10^{-3}$).Targeted ablations further show that suppressing the heads most aligned with the spin-bath predictions induces the anticipated shifts in output probabilities, confirming a causal link rather than a coincidental association. Taken together, our findings provide the first strong empirical evidence for the spin-bath analogy in a production-grade model. In this work, we utilize the context-field lens, which provides physics-grounded interpretability and motivates the development of novel generative models bridging theoretical condensed matter physics and artificial intelligence.

Ankan Mullick, Akash Ghosh, G Sai Chaitanya et al.

Material science literature is a rich source of factual information about various categories of entities (like materials and compositions) and various relations between these entities, such as conductivity, voltage, etc. Automatically extracting this information to generate a material science knowledge base is a challenging task. In this paper, we propose MatSciRE (Material Science Relation Extractor), a Pointer Network-based encoder-decoder framework, to jointly extract entities and relations from material science articles as a triplet ($entity1, relation, entity2$). Specifically, we target the battery materials and identify five relations to work on - conductivity, coulombic efficiency, capacity, voltage, and energy. Our proposed approach achieved a much better F1-score (0.771) than a previous attempt using ChemDataExtractor (0.716). The overall graphical framework of MatSciRE is shown in Fig 1. The material information is extracted from material science literature in the form of entity-relation triplets using MatSciRE.

Souradip Guha, Ankan Mullick, Jatin Agrawal et al.

The number of published articles in the field of materials science is growing rapidly every year. This comparatively unstructured data source, which contains a large amount of information, has a restriction on its re-usability, as the information needed to carry out further calculations using the data in it must be extracted manually. It is very important to obtain valid and contextually correct information from the online (offline) data, as it can be useful not only to generate inputs for further calculations, but also to incorporate them into a querying framework. Retaining this context as a priority, we have developed an automated tool, MatScIE (Material Scince Information Extractor) that can extract relevant information from material science literature and make a structured database that is much easier to use for material simulations. Specifically, we extract the material details, methods, code, parameters, and structure from the various research articles. Finally, we created a web application where users can upload published articles and view/download the information obtained from this tool and can create their own databases for their personal uses.