Reza Akbarian Bafghi

Reza Akbarian Bafghi, Sukirt Thakur, Maziar Raissi

Accurate and rapid estimation of hemodynamic metrics, such as pressure and wall shear stress (WSS), is important for assessing the severity of Coronary Artery Disease (CAD). Existing approaches, including invasive Fractional Flow Reserve (FFR) measurements and computationally expensive Computational Fluid Dynamics (CFD) simulations, face challenges in invasiveness, cost, and speed. We present a framework for fast, non-invasive coronary hemodynamics prediction. The model encodes 1D vessel centerlines together with inlet flow rate using a transformer-based encoder, and predicts continuous wall-based fields via an anisotropic Radial Basis Function (RBF) decoder aligned with vessel morphology. To support training and evaluation, we introduce two datasets with paired steady-state OpenFOAM simulations: (i) a synthetic benchmark of 4,200 single-vessel geometries with controlled anatomical variations, and (ii) a multi-vessel dataset derived from ImageCAS including 4,800 cases spanning both right and left coronary arteries, generated by randomly introducing stenoses and varying physiologically plausible flow rates. Across both datasets, our method achieves lower pressure and WSS errors than strong neural-operator baselines (GNOT, Transolver, and ONO) at a fraction of the computational cost of CFD. On the multi-vessel dataset, using 1,024 anisotropic RBF centers our model reduces the mean relative L2 error by 52% compared to the best neural-operator baseline, while at 128 centers it requires 13.8x fewer FLOPs than GNOT and still outperforms all baselines. The single-vessel dataset is publicly available at https://huggingface.co/datasets/angioinsight/single-vessel-flow.

Sukirt Thakur, Marcus Roper, Yang Zhou et al.

More than 10 million coronary angiograms are performed globally each year, providing a gold standard for detecting obstructive coronary artery disease. Yet, no obstructive lesions are identified in 70% of patients evaluated for ischemic heart disease. Up to half of these patients have undiagnosed, life-limiting coronary microvascular dysfunction (CMD), which remains under-detected due to the limited availability of invasive tools required to measure coronary flow reserve (CFR). Here, we introduce PUNCH, a non-invasive, uncertainty-aware framework for estimating CFR directly from standard coronary angiography. PUNCH integrates physics-informed neural networks with variational inference to infer coronary blood flow from first-principles models of contrast transport, without requiring ground-truth flow measurements or population-level training. The pipeline runs in approximately three minutes per patient on a single GPU. Validated on synthetic angiograms with controlled noise and imaging artifacts, as well as on clinical bolus thermodilution data from 20 patients, PUNCH demonstrates accurate and uncertainty-calibrated CFR estimation. This approach establishes a new paradigm for CMD diagnosis and illustrates how physics-informed inference can substantially expand the diagnostic utility of available clinical imaging.

Nidhin Harilal, Amit Kiran Rege, Reza Akbarian Bafghi et al.

Self-supervised learning (SSL) has revolutionized learning from large-scale unlabeled datasets, yet the intrinsic relationship between pretraining data and the learned representations remains poorly understood. Traditional supervised learning benefits from gradient-based data attribution tools like influence functions that measure the contribution of an individual data point to model predictions. However, existing definitions of influence rely on labels, making them unsuitable for SSL settings. We address this gap by introducing Influence-SSL, a novel and label-free approach for defining influence functions tailored to SSL. Our method harnesses the stability of learned representations against data augmentations to identify training examples that help explain model predictions. We provide both theoretical foundations and empirical evidence to show the utility of Influence-SSL in analyzing pre-trained SSL models. Our analysis reveals notable differences in how SSL models respond to influential data compared to supervised models. Finally, we validate the effectiveness of Influence-SSL through applications in duplicate detection, outlier identification and fairness analysis. Code is available at: \url{https://github.com/cryptonymous9/Influence-SSL}.

Reza Akbarian Bafghi, Nidhin Harilal, Claire Monteleoni et al.

Artificial neural networks often suffer from catastrophic forgetting, where learning new concepts leads to a complete loss of previously acquired knowledge. We observe that this issue is particularly magnified in vision transformers (ViTs), where post-pre-training and fine-tuning on new tasks can significantly degrade the model's original general abilities. For instance, a DINO ViT-Base/16 pre-trained on ImageNet-1k loses over 70% accuracy on ImageNet-1k after just 10 iterations of fine-tuning on CIFAR-100. Overcoming this stability-plasticity dilemma is crucial for enabling ViTs to continuously learn and adapt to new domains while preserving their initial knowledge. In this work, we study two new parameter-efficient fine-tuning strategies: (1)~Block Expansion, and (2) Low-rank adaptation (LoRA). Our experiments reveal that using either Block Expansion or LoRA on self-supervised pre-trained ViTs surpass fully fine-tuned ViTs in new domains while offering significantly greater parameter efficiency. Notably, we find that Block Expansion experiences only a minimal performance drop in the pre-training domain, thereby effectively mitigating catastrophic forgetting in pre-trained ViTs.

Reza Akbarian Bafghi, Carden Bagwell, Avinash Ravichandran et al.

Adapting deep learning models to new domains often requires computationally intensive retraining and risks catastrophic forgetting. While fine-tuning enables domain-specific adaptation, it can reduce robustness to distribution shifts, impacting out-of-distribution (OOD) performance. Pre-trained zero-shot models like CLIP offer strong generalization but may suffer degraded robustness after fine-tuning. Building on Task Adaptive Parameter Sharing (TAPS), we propose a simple yet effective extension as a parameter-efficient fine-tuning (PEFT) method, using an indicator function to selectively activate Low-Rank Adaptation (LoRA) blocks. Our approach minimizes knowledge loss, retains its generalization strengths under domain shifts, and significantly reduces computational costs compared to traditional fine-tuning. We demonstrate that effective fine-tuning can be achieved with as few as 5\% of active blocks, substantially improving efficiency. Evaluations on pre-trained models such as CLIP and DINO-ViT demonstrate our method's broad applicability and effectiveness in maintaining performance and knowledge retention.

Logan Barnhart, Reza Akbarian Bafghi, Stephen Becker et al.

Reinforcement Learning from Human Feedback (RLHF) is increasingly used to align large language models (LLMs) with human preferences. However, the effectiveness of RLHF in addressing underlying biases remains unclear. This study investigates the relationship between RLHF and both covert and overt biases in LLMs, particularly focusing on biases against African Americans. We applied various RLHF techniques (DPO, ORPO, and RLOO) to Llama 3 8B and evaluated the covert and overt biases of the resulting models using matched-guise probing and explicit bias testing. We performed additional tests with DPO on different base models and datasets; among several implications, we found that SFT before RLHF calcifies model biases. Additionally, we extend the tools for measuring biases to multi-modal models. Through our experiments we collect evidence that indicates that current alignment techniques are inadequate for nebulous tasks such as mitigating covert biases, highlighting the need for capable datasets, data curating techniques, or alignment tools.

Reza Akbarian Bafghi, Nidhin Harilal, Claire Monteleoni et al.

This paper introduces MixDiff, a new self-supervised learning (SSL) pre-training framework that combines real and synthetic images. Unlike traditional SSL methods that predominantly use real images, MixDiff uses a variant of Stable Diffusion to replace an augmented instance of a real image, facilitating the learning of cross real-synthetic image representations. Our key insight is that while models trained solely on synthetic images underperform, combining real and synthetic data leads to more robust and adaptable representations. Experiments show MixDiff enhances SimCLR, BarlowTwins, and DINO across various robustness datasets and domain transfer tasks, boosting SimCLR's ImageNet-1K accuracy by 4.56%. Our framework also demonstrates comparable performance without needing any augmentations, a surprising finding in SSL where augmentations are typically crucial.