Min Shi

Yan Luo, Congcong Wen, Min Shi et al.

We present a comprehensive theoretical framework analyzing the relationship between data distributions and fairness guarantees in equitable deep learning. Our work establishes novel theoretical bounds that explicitly account for data distribution heterogeneity across demographic groups, while introducing a formal analysis framework that minimizes expected loss differences across these groups. We derive comprehensive theoretical bounds for fairness errors and convergence rates, and characterize how distributional differences between groups affect the fundamental trade-off between fairness and accuracy. Through extensive experiments on diverse datasets, including FairVision (ophthalmology), CheXpert (chest X-rays), HAM10000 (dermatology), and FairFace (facial recognition), we validate our theoretical findings and demonstrate that differences in feature distributions across demographic groups significantly impact model fairness, with performance disparities particularly pronounced in racial categories. The theoretical bounds we derive crroborate these empirical observations, providing insights into the fundamental limits of achieving fairness in deep learning models when faced with heterogeneous data distributions. This work advances our understanding of fairness in AI-based diagnosis systems and provides a theoretical foundation for developing more equitable algorithms. The code for analysis is publicly available via \url{https://github.com/Harvard-Ophthalmology-AI-Lab/fairness_guarantees}.

Minghan Li, Congcong Wen, Yu Tian et al.

Fairness remains a critical concern in healthcare, where unequal access to services and treatment outcomes can adversely affect patient health. While Federated Learning (FL) presents a collaborative and privacy-preserving approach to model training, ensuring fairness is challenging due to heterogeneous data across institutions, and current research primarily addresses non-medical applications. To fill this gap, we establish the first experimental benchmark for fairness in medical FL, evaluating six representative FL methods across diverse demographic attributes and imaging modalities. We introduce FairFedMed, the first medical FL dataset specifically designed to study group fairness (i.e., demographics). It comprises two parts: FairFedMed-Oph, featuring 2D fundus and 3D OCT ophthalmology samples with six demographic attributes; and FairFedMed-Chest, which simulates real cross-institutional FL using subsets of CheXpert and MIMIC-CXR. Together, they support both simulated and real-world FL across diverse medical modalities and demographic groups. Existing FL models often underperform on medical images and overlook fairness across demographic groups. To address this, we propose FairLoRA, a fairness-aware FL framework based on SVD-based low-rank approximation. It customizes singular value matrices per demographic group while sharing singular vectors, ensuring both fairness and efficiency. Experimental results on the FairFedMed dataset demonstrate that FairLoRA not only achieves state-of-the-art performance in medical image classification but also significantly improves fairness across diverse populations. Our code and dataset can be accessible via link: https://wang.hms.harvard.edu/fairfedmed/.

Yan Luo, Min Shi, Muhammad Osama Khan et al.

Fairness is a critical concern in deep learning, especially in healthcare, where these models influence diagnoses and treatment decisions. Although fairness has been investigated in the vision-only domain, the fairness of medical vision-language (VL) models remains unexplored due to the scarcity of medical VL datasets for studying fairness. To bridge this research gap, we introduce the first fair vision-language medical dataset Harvard-FairVLMed that provides detailed demographic attributes, ground-truth labels, and clinical notes to facilitate an in-depth examination of fairness within VL foundation models. Using Harvard-FairVLMed, we conduct a comprehensive fairness analysis of two widely-used VL models (CLIP and BLIP2), pre-trained on both natural and medical domains, across four different protected attributes. Our results highlight significant biases in all VL models, with Asian, Male, Non-Hispanic, and Spanish being the preferred subgroups across the protected attributes of race, gender, ethnicity, and language, respectively. In order to alleviate these biases, we propose FairCLIP, an optimal-transport-based approach that achieves a favorable trade-off between performance and fairness by reducing the Sinkhorn distance between the overall sample distribution and the distributions corresponding to each demographic group. As the first VL dataset of its kind, Harvard-FairVLMed holds the potential to catalyze advancements in the development of machine learning models that are both ethically aware and clinically effective. Our dataset and code are available at https://ophai.hms.harvard.edu/datasets/harvard-fairvlmed10k.

Leila Gheisi, Henry Chu, Raju Gottumukkala et al.

The use of artificial intelligence (AI) in automated disease classification significantly reduces healthcare costs and improves the accessibility of services. However, this transformation has given rise to concerns about the fairness of AI, which disproportionately affects certain groups, particularly patients from underprivileged populations. Recently, a number of methods and large-scale datasets have been proposed to address group performance disparities. Although these methods have shown effectiveness in disease classification tasks, they may fall short in ensuring fair prediction of disease progression, mainly because of limited longitudinal data with diverse demographics available for training a robust and equitable prediction model. In this paper, we introduce TransFair to enhance demographic fairness in progression prediction for ocular diseases. TransFair aims to transfer a fairness-enhanced disease classification model to the task of progression prediction with fairness preserved. Specifically, we train a fair EfficientNet, termed FairEN, equipped with a fairness-aware attention mechanism using extensive data for ocular disease classification. Subsequently, this fair classification model is adapted to a fair progression prediction model through knowledge distillation, which aims to minimize the latent feature distances between the classification and progression prediction models. We evaluate FairEN and TransFair for fairness-enhanced ocular disease classification and progression prediction using both two-dimensional (2D) and 3D retinal images. Extensive experiments and comparisons with models with and without considering fairness learning show that TransFair effectively enhances demographic equity in predicting ocular disease progression.

Yu Huang, Yufei Tang, Xingquan Zhu et al.

Spatio-temporal forecasting is of great importance in a wide range of dynamical systems applications from atmospheric science, to recent COVID-19 spread modeling. These applications rely on accurate predictions of spatio-temporal structured data reflecting real-world phenomena. A stunning characteristic is that the dynamical system is not only driven by some physics laws but also impacted by the localized factor in spatial and temporal regions. One of the major challenges is to infer the underlying causes, which generate the perceived data stream and propagate the involved causal dynamics through the distributed observing units. Another challenge is that the success of machine learning based predictive models requires massive annotated data for model training. However, the acquisition of high-quality annotated data is objectively manual and tedious as it needs a considerable amount of human intervention, making it infeasible in fields that require high levels of expertise. To tackle these challenges, we advocate a spatio-temporal physics-coupled neural networks (ST-PCNN) model to learn the underlying physics of the dynamical system and further couple the learned physics to assist the learning of the recurring dynamics. To deal with data-acquisition constraints, an active learning mechanism with Kriging for actively acquiring the most informative data is proposed for ST-PCNN training in a partially observable environment. Our experiments on both synthetic and real-world datasets exhibit that the proposed ST-PCNN with active learning converges to near optimal accuracy with substantially fewer instances.

Jianzhu Huai, Yukai Lin, Yuan Zhuang et al.

State estimation problems without absolute position measurements routinely arise in navigation of unmanned aerial vehicles, autonomous ground vehicles, etc., whose proper operation relies on accurate state estimates and reliable covariances. Unaware of absolute positions, these problems have immanent unobservable directions. Traditional causal estimators, however, usually gain spurious information on the unobservable directions, leading to over-confident covariance inconsistent with actual estimator errors. The consistency problem of fixed-lag smoothers (FLSs) has only been attacked by the first estimate Jacobian (FEJ) technique because of the complexity to analyze their observability property. But the FEJ has several drawbacks hampering its wide adoption. To ensure the consistency of a FLS, this paper introduces the right invariant error formulation into the FLS framework. To our knowledge, we are the first to analyze the observability of a FLS with the right invariant error. Our main contributions are twofold. As the first novelty, to bypass the complexity of analysis with the classic observability matrix, we show that observability analysis of FLSs can be done equivalently on the linearized system. Second, we prove that the inconsistency issue in the traditional FLS can be elegantly solved by the right invariant error formulation without artificially correcting Jacobians. By applying the proposed FLS to the monocular visual inertial simultaneous localization and mapping (SLAM) problem, we confirm that the method consistently estimates covariance similarly to a batch smoother in simulation and that our method achieved comparable accuracy as traditional FLSs on real data.

Min Shi, David A. Wilson, Xingquan Zhu et al.

Automated machine learning (AutoML) has seen a resurgence in interest with the boom of deep learning over the past decade. In particular, Neural Architecture Search (NAS) has seen significant attention throughout the AutoML research community, and has pushed forward the state-of-the-art in a number of neural models to address grid-like data such as texts and images. However, very litter work has been done about Graph Neural Networks (GNN) learning on unstructured network data. Given the huge number of choices and combinations of components such as aggregator and activation function, determining the suitable GNN structure for a specific problem normally necessitates tremendous expert knowledge and laborious trails. In addition, the slight variation of hyper parameters such as learning rate and dropout rate could dramatically hurt the learning capacity of GNN. In this paper, we propose a novel AutoML framework through the evolution of individual models in a large GNN architecture space involving both neural structures and learning parameters. Instead of optimizing only the model structures with fixed parameter settings as existing work, an alternating evolution process is performed between GNN structures and learning parameters to dynamically find the best fit of each other. To the best of our knowledge, this is the first work to introduce and evaluate evolutionary architecture search for GNN models. Experiments and validations demonstrate that evolutionary NAS is capable of matching existing state-of-the-art reinforcement learning approaches for both the semi-supervised transductive and inductive node representation learning and classification.

Min Shi, Yufei Tang, Xingquan Zhu et al.

Knowledge representation of graph-based systems is fundamental across many disciplines. To date, most existing methods for representation learning primarily focus on networks with simplex labels, yet real-world objects (nodes) are inherently complex in nature and often contain rich semantics or labels, e.g., a user may belong to diverse interest groups of a social network, resulting in multi-label networks for many applications. The multi-label network nodes not only have multiple labels for each node, such labels are often highly correlated making existing methods ineffective or fail to handle such correlation for node representation learning. In this paper, we propose a novel multi-label graph convolutional network (ML-GCN) for learning node representation for multi-label networks. To fully explore label-label correlation and network topology structures, we propose to model a multi-label network as two Siamese GCNs: a node-node-label graph and a label-label-node graph. The two GCNs each handle one aspect of representation learning for nodes and labels, respectively, and they are seamlessly integrated under one objective function. The learned label representations can effectively preserve the inner-label interaction and node label properties, and are then aggregated to enhance the node representation learning under a unified training framework. Experiments and comparisons on multi-label node classification validate the effectiveness of our proposed approach.