Ruichu Cai

LG
h-index27
72papers
2,388citations
Novelty53%
AI Score63

72 Papers

24.3AIFeb 10, 2023Code
A Survey on Causal Reinforcement Learning

Yan Zeng, Ruichu Cai, Fuchun Sun et al. · tsinghua

While Reinforcement Learning (RL) achieves tremendous success in sequential decision-making problems of many domains, it still faces key challenges of data inefficiency and the lack of interpretability. Interestingly, many researchers have leveraged insights from the causality literature recently, bringing forth flourishing works to unify the merits of causality and address well the challenges from RL. As such, it is of great necessity and significance to collate these Causal Reinforcement Learning (CRL) works, offer a review of CRL methods, and investigate the potential functionality from causality toward RL. In particular, we divide existing CRL approaches into two categories according to whether their causality-based information is given in advance or not. We further analyze each category in terms of the formalization of different models, ranging from the Markov Decision Process (MDP), Partially Observed Markov Decision Process (POMDP), Multi-Arm Bandits (MAB), and Dynamic Treatment Regime (DTR). Moreover, we summarize the evaluation matrices and open sources while we discuss emerging applications, along with promising prospects for the future development of CRL.

33.5LGJul 31, 2023Code
Causal-learn: Causal Discovery in Python

Yujia Zheng, Biwei Huang, Wei Chen et al.

Causal discovery aims at revealing causal relations from observational data, which is a fundamental task in science and engineering. We describe $\textit{causal-learn}$, an open-source Python library for causal discovery. This library focuses on bringing a comprehensive collection of causal discovery methods to both practitioners and researchers. It provides easy-to-use APIs for non-specialists, modular building blocks for developers, detailed documentation for learners, and comprehensive methods for all. Different from previous packages in R or Java, $\textit{causal-learn}$ is fully developed in Python, which could be more in tune with the recent preference shift in programming languages within related communities. The library is available at https://github.com/py-why/causal-learn.

12.3LGNov 8, 2023Code
Identifying Semantic Component for Robust Molecular Property Prediction

Zijian Li, Zunhong Xu, Ruichu Cai et al.

Although graph neural networks have achieved great success in the task of molecular property prediction in recent years, their generalization ability under out-of-distribution (OOD) settings is still under-explored. Different from existing methods that learn discriminative representations for prediction, we propose a generative model with semantic-components identifiability, named SCI. We demonstrate that the latent variables in this generative model can be explicitly identified into semantic-relevant (SR) and semantic-irrelevant (SI) components, which contributes to better OOD generalization by involving minimal change properties of causal mechanisms. Specifically, we first formulate the data generation process from the atom level to the molecular level, where the latent space is split into SI substructures, SR substructures, and SR atom variables. Sequentially, to reduce misidentification, we restrict the minimal changes of the SR atom variables and add a semantic latent substructure regularization to mitigate the variance of the SR substructure under augmented domain changes. Under mild assumptions, we prove the block-wise identifiability of the SR substructure and the comment-wise identifiability of SR atom variables. Experimental studies achieve state-of-the-art performance and show general improvement on 21 datasets in 3 mainstream benchmarks. Moreover, the visualization results of the proposed SCI method provide insightful case studies and explanations for the prediction results. The code is available at: https://github.com/DMIRLAB-Group/SCI.

8.6CLMay 5Code
SERE: Structural Example Retrieval for Enhancing LLMs in Event Causality Identification

Zhifeng Hao, Zhongjie Chen, Junhao Lu et al.

Event Causality Identification (ECI) requires models to determine whether a given pair of events in a context exhibits a causal relationship. While Large Language Models (LLMs) have demonstrated strong performance across various NLP tasks, their effectiveness in ECI remains limited due to biases in causal reasoning, often leading to overprediction of causal relationships (causal hallucination). To mitigate these issues and enhance LLM performance in ECI, we propose SERE, a structural example retrieval framework that leverages LLMs' few-shot learning capabilities. SERE introduces an innovative retrieval mechanism based on three structural concepts: (i) Conceptual Path Metric, which measures the conceptual relationship between events using edit distance in ConceptNet; (ii) Syntactic Metric, which quantifies structural similarity through tree edit distance on syntactic trees; and (iii) Causal Pattern Filtering, which filters examples based on predefined causal structures using LLMs. By integrating these structural retrieval strategies, SERE selects more relevant examples to guide LLMs in causal reasoning, mitigating bias and improving accuracy in ECI tasks. Extensive experiments on multiple ECI datasets validate the effectiveness of SERE. The source code is publicly available at https://github.com/DMIRLAB-Group/SERE.

7.5CLMay 5Code
SAM-NER: Semantic Archetype Mediation for Zero-Shot Named Entity Recognition

Ruichu Cai, Juntao Gan, Miao Mai et al.

Zero-shot Named Entity Recognition (ZS-NER) remains brittle under domain and schema shifts, where unseen label definitions often misalign with a large language model's (LLM's) intrinsic semantic organization. As a result, directly mapping entity mentions to fine-grained target labels can induce systematic semantic drift, especially when target schemas are novel or semantically overlapping. We propose \textbf{SAM-NER}, a three-stage framework based on \emph{Semantic Archetype Mediation} that stabilizes cross-domain transfer through an intermediate, domain-invariant archetype space. SAM-NER: (i) performs \emph{Entity Discovery} via cooperative extraction and consensus-based denoising to obtain high-coverage, high-fidelity entity spans; (ii) conducts \emph{Abstract Mediation} by projecting entities into a compact set of universal semantic archetypes distilled from high-level ontological abstractions; and (iii) applies \emph{Semantic Calibration} to resolve archetype-level predictions into target-domain types through constrained, definition-aligned inference with a frozen LLM. Experiments on the CrossNER benchmark show that SAM-NER consistently outperforms strong prior ZS-NER baselines in cross-domain settings. Our implementation will be open-sourced at https://github.com/DMIRLAB-Group/SAM-NER.

8.5CLApr 25Code
$\mathcal{S}^2$IT: Stepwise Syntax Integration Tuning for Large Language Models in Aspect Sentiment Quad Prediction

Bingfeng Chen, Chenjie Qiu, Yifeng Xie et al.

Aspect Sentiment Quad Prediction (ASQP) has seen significant advancements, largely driven by the powerful semantic understanding and generative capabilities of large language models (LLMs). However, while syntactic structure information has been proven effective in previous extractive paradigms, it remains underutilized in the generative paradigm of LLMs due to their limited reasoning capabilities. In this paper, we propose S^2IT, a novel Stepwise Syntax Integration Tuning framework that progressively integrates syntactic structure knowledge into LLMs through a multi-step tuning process. The training process is divided into three steps. S^2IT decomposes the quadruple generation task into two stages: 1) Global Syntax-guided Extraction and 2) Local Syntax-guided Classification, integrating both global and local syntactic structure information. Finally, Fine-grained Structural Tuning enhances the model's understanding of syntactic structures through the prediction of element links and node classification. Experiments demonstrate that S^2IT significantly improves state-of-the-art performance across multiple datasets. Our implementation will be open-sourced at https://github.com/DMIRLAB-Group/S2IT.

10.7LGAug 13, 2023
Generalized Independent Noise Condition for Estimating Causal Structure with Latent Variables

Feng Xie, Biwei Huang, Zhengming Chen et al.

We investigate the task of learning causal structure in the presence of latent variables, including locating latent variables and determining their quantity, and identifying causal relationships among both latent and observed variables. To this end, we propose a Generalized Independent Noise (GIN) condition for linear non-Gaussian acyclic causal models that incorporate latent variables, which establishes the independence between a linear combination of certain measured variables and some other measured variables. Specifically, for two observed random vectors $\bf{Y}$ and $\bf{Z}$, GIN holds if and only if $ω^{\intercal}\mathbf{Y}$ and $\mathbf{Z}$ are independent, where $ω$ is a non-zero parameter vector determined by the cross-covariance between $\mathbf{Y}$ and $\mathbf{Z}$. We then give necessary and sufficient graphical criteria of the GIN condition in linear non-Gaussian acyclic models. Roughly speaking, GIN implies the existence of a set $\mathcal{S}$ such that $\mathcal{S}$ is causally earlier (w.r.t. the causal ordering) than $\mathbf{Y}$, and that every active (collider-free) path between $\mathbf{Y}$ and $\mathbf{Z}$ must contain a node from $\mathcal{S}$. Interestingly, we find that the independent noise condition (i.e., if there is no confounder, causes are independent of the residual derived from regressing the effect on the causes) can be seen as a special case of GIN. With such a connection between GIN and latent causal structures, we further leverage the proposed GIN condition, together with a well-designed search procedure, to efficiently estimate Linear, Non-Gaussian Latent Hierarchical Models (LiNGLaHs), where latent confounders may also be causally related and may even follow a hierarchical structure. We show that the causal structure of a LiNGLaH is identifiable in light of GIN conditions. Experimental results show the effectiveness of the proposed method.

8.6CLMar 6Code
Track-SQL: Enhancing Generative Language Models with Dual-Extractive Modules for Schema and Context Tracking in Multi-turn Text-to-SQL

Bingfeng Chen, Shaobin Shi, Yongqi Luo et al.

Generative language models have shown significant potential in single-turn Text-to-SQL. However, their performance does not extend equivalently to multi-turn Text-to-SQL. This is primarily due to generative language models' inadequacy in handling the complexities of context information and dynamic schema linking in multi-turn interactions. In this paper, we propose a framework named Track-SQL, which enhances generative language models with dual-extractive modules designed to track schema and contextual changes in multi-turn Text-to-SQL. Specifically, Track-SQL incorporates a \emph{Semantic-enhanced Schema Extractor} and a \emph{Schema-aware Context Extractor}. Experimental results demonstrate that Track-SQL achieves state-of-the-art performance on the SparC and CoSQL datasets. Furthermore, detailed ablation studies reveal that Track-SQL significantly improves execution accuracy in multi-turn interactions by 7.1\% and 9.55\% on these datasets, respectively. Our implementation will be open-sourced at https://github.com/DMIRLAB-Group/Track-SQL.

24.0LGOct 7, 2023Code
Subspace Identification for Multi-Source Domain Adaptation

Zijian Li, Ruichu Cai, Guangyi Chen et al.

Multi-source domain adaptation (MSDA) methods aim to transfer knowledge from multiple labeled source domains to an unlabeled target domain. Although current methods achieve target joint distribution identifiability by enforcing minimal changes across domains, they often necessitate stringent conditions, such as an adequate number of domains, monotonic transformation of latent variables, and invariant label distributions. These requirements are challenging to satisfy in real-world applications. To mitigate the need for these strict assumptions, we propose a subspace identification theory that guarantees the disentanglement of domain-invariant and domain-specific variables under less restrictive constraints regarding domain numbers and transformation properties, thereby facilitating domain adaptation by minimizing the impact of domain shifts on invariant variables. Based on this theory, we develop a Subspace Identification Guarantee (SIG) model that leverages variational inference. Furthermore, the SIG model incorporates class-aware conditional alignment to accommodate target shifts where label distributions change with the domains. Experimental results demonstrate that our SIG model outperforms existing MSDA techniques on various benchmark datasets, highlighting its effectiveness in real-world applications.

12.4LGDec 14, 2022Code
On the Probability of Necessity and Sufficiency of Explaining Graph Neural Networks: A Lower Bound Optimization Approach

Ruichu Cai, Yuxuan Zhu, Xuexin Chen et al.

The explainability of Graph Neural Networks (GNNs) is critical to various GNN applications, yet it remains a significant challenge. A convincing explanation should be both necessary and sufficient simultaneously. However, existing GNN explaining approaches focus on only one of the two aspects, necessity or sufficiency, or a heuristic trade-off between the two. Theoretically, the Probability of Necessity and Sufficiency (PNS) holds the potential to identify the most necessary and sufficient explanation since it can mathematically quantify the necessity and sufficiency of an explanation. Nevertheless, the difficulty of obtaining PNS due to non-monotonicity and the challenge of counterfactual estimation limit its wide use. To address the non-identifiability of PNS, we resort to a lower bound of PNS that can be optimized via counterfactual estimation, and propose a framework of Necessary and Sufficient Explanation for GNN (NSEG) via optimizing that lower bound. Specifically, we depict the GNN as a structural causal model (SCM), and estimate the probability of counterfactual via the intervention under the SCM. Additionally, we leverage continuous masks with a sampling strategy to optimize the lower bound to enhance the scalability. Empirical results demonstrate that NSEG outperforms state-of-the-art methods, consistently generating the most necessary and sufficient explanations.

12.3LGAug 8, 2023
Generalization bound for estimating causal effects from observational network data

Ruichu Cai, Zeqin Yang, Weilin Chen et al.

Estimating causal effects from observational network data is a significant but challenging problem. Existing works in causal inference for observational network data lack an analysis of the generalization bound, which can theoretically provide support for alleviating the complex confounding bias and practically guide the design of learning objectives in a principled manner. To fill this gap, we derive a generalization bound for causal effect estimation in network scenarios by exploiting 1) the reweighting schema based on joint propensity score and 2) the representation learning schema based on Integral Probability Metric (IPM). We provide two perspectives on the generalization bound in terms of reweighting and representation learning, respectively. Motivated by the analysis of the bound, we propose a weighting regression method based on the joint propensity score augmented with representation learning. Extensive experimental studies on two real-world networks with semi-synthetic data demonstrate the effectiveness of our algorithm.

6.6LGJun 25, 2023
TNPAR: Topological Neural Poisson Auto-Regressive Model for Learning Granger Causal Structure from Event Sequences

Yuequn Liu, Ruichu Cai, Wei Chen et al.

Learning Granger causality from event sequences is a challenging but essential task across various applications. Most existing methods rely on the assumption that event sequences are independent and identically distributed (i.i.d.). However, this i.i.d. assumption is often violated due to the inherent dependencies among the event sequences. Fortunately, in practice, we find these dependencies can be modeled by a topological network, suggesting a potential solution to the non-i.i.d. problem by introducing the prior topological network into Granger causal discovery. This observation prompts us to tackle two ensuing challenges: 1) how to model the event sequences while incorporating both the prior topological network and the latent Granger causal structure, and 2) how to learn the Granger causal structure. To this end, we devise a unified topological neural Poisson auto-regressive model with two processes. In the generation process, we employ a variant of the neural Poisson process to model the event sequences, considering influences from both the topological network and the Granger causal structure. In the inference process, we formulate an amortized inference algorithm to infer the latent Granger causal structure. We encapsulate these two processes within a unified likelihood function, providing an end-to-end framework for this task. Experiments on simulated and real-world data demonstrate the effectiveness of our approach.

6.9LGMay 7, 2022
Time-Series Domain Adaptation via Sparse Associative Structure Alignment: Learning Invariance and Variance

Zijian Li, Ruichu Cai, Jiawei Chen et al.

Domain adaptation on time-series data is often encountered in the industry but received limited attention in academia. Most of the existing domain adaptation methods for time-series data borrow the ideas from the existing methods for non-time series data to extract the domain-invariant representation. However, two peculiar difficulties to time-series data have not been solved. 1) It is not a trivial task to model the domain-invariant and complex dependence among different timestamps. 2) The domain-variant information is important but how to leverage them is almost underexploited. Fortunately, the stableness of causal structures among different domains inspires us to explore the structures behind the time-series data. Based on this inspiration, we investigate the domain-invariant unweighted sparse associative structures and the domain-variant strengths of the structures. To achieve this, we propose Sparse Associative structure alignment by learning Invariance and Variance (SASA-IV in short), a model that simultaneously aligns the invariant unweighted spare associative structures and considers the variant information for time-series unsupervised domain adaptation. Technologically, we extract the domain-invariant unweighted sparse associative structures with a unidirectional alignment restriction and embed the domain-variant strengths via a well-designed autoregressive module. Experimental results not only testify that our model yields state-of-the-art performance on three real-world datasets but also provide some insightful discoveries on knowledge transfer.

9.6CLNov 26, 2025Code
Text-to-SQL as Dual-State Reasoning: Integrating Adaptive Context and Progressive Generation

Zhifeng Hao, Qibin Song, Ruichu Cai et al.

Recent divide-and-conquer reasoning approaches, particularly those based on Chain-of-Thought (CoT), have substantially improved the Text-to-SQL capabilities of Large Language Models (LLMs). However, when applied to complex enterprise databases, such methods struggle to maintain coherent reasoning due to limited context capacity, unreliable schema linking, and weak grounding in database semantics. To overcome these issues, we introduce DSR-SQL, a \textbf{D}ual-\textbf{S}tate \textbf{R}easoning framework that models Text-to-SQL as an interaction between an adaptive context state and a progressive generation state. The first constructs a compact, semantically faithful environment by refining large schemas and selecting relevant structures, while the second formalizes SQL synthesis as feedback-guided state transitions, enabling the model to self-correct and align with user intent. Without any post-training or in-context examples, DSR-SQL achieves competitive performance, reaching 35.28\% execution accuracy on Spider 2.0-Snow and 68.32\% on BIRD development set. Our implementation will be open-sourced at: https://github.com/DMIRLAB-Group/DSR-SQL.

11.8LGAug 9, 2022Code
Long-term Causal Effects Estimation via Latent Surrogates Representation Learning

Ruichu Cai, Weilin Chen, Zeqin Yang et al.

Estimating long-term causal effects based on short-term surrogates is a significant but challenging problem in many real-world applications, e.g., marketing and medicine. Despite its success in certain domains, most existing methods estimate causal effects in an idealistic and simplistic way - ignoring the causal structure among short-term outcomes and treating all of them as surrogates. However, such methods cannot be well applied to real-world scenarios, in which the partially observed surrogates are mixed with their proxies among short-term outcomes. To this end, we develop our flexible method, Laser, to estimate long-term causal effects in the more realistic situation that the surrogates are observed or have observed proxies.Given the indistinguishability between the surrogates and proxies, we utilize identifiable variational auto-encoder (iVAE) to recover the whole valid surrogates on all the surrogates candidates without the need of distinguishing the observed surrogates or the proxies of latent surrogates. With the help of the recovered surrogates, we further devise an unbiased estimation of long-term causal effects. Extensive experimental results on the real-world and semi-synthetic datasets demonstrate the effectiveness of our proposed method.

4.6LGJul 21, 2024
Unifying Invariant and Variant Features for Graph Out-of-Distribution via Probability of Necessity and Sufficiency

Xuexin Chen, Ruichu Cai, Kaitao Zheng et al.

Graph Out-of-Distribution (OOD), requiring that models trained on biased data generalize to the unseen test data, has considerable real-world applications. One of the most mainstream methods is to extract the invariant subgraph by aligning the original and augmented data with the help of environment augmentation. However, these solutions might lead to the loss or redundancy of semantic subgraphs and result in suboptimal generalization. To address this challenge, we propose exploiting Probability of Necessity and Sufficiency (PNS) to extract sufficient and necessary invariant substructures. Beyond that, we further leverage the domain variant subgraphs related to the labels to boost the generalization performance in an ensemble manner. Specifically, we first consider the data generation process for graph data. Under mild conditions, we show that the sufficient and necessary invariant subgraph can be extracted by minimizing an upper bound, built on the theoretical advance of the probability of necessity and sufficiency. To further bridge the theory and algorithm, we devise the model called Sufficiency and Necessity Inspired Graph Learning (SNIGL), which ensembles an invariant subgraph classifier on top of latent sufficient and necessary invariant subgraphs, and a domain variant subgraph classifier specific to the test domain for generalization enhancement. Experimental results demonstrate that our SNIGL model outperforms the state-of-the-art techniques on six public benchmarks, highlighting its effectiveness in real-world scenarios.

6.3AIMay 7
Temporal Smoothness Doubly Robust Learning for Debiased Knowledge Tracing

Peilin Zhan, Wei Chen, Weilin Chen et al.

Knowledge Tracing (KT) is fundamental to intelligent education systems, yet relies on educational logs that are selectively observed. The non-random nature of exercise recommendations and student choices inevitably induces severe selection bias. Most existing KT methods neglect this issue, training on observed logs using standard empirical risk, which yields biased mastery estimates and accumulates errors in subsequent recommendations. To address this, we introduce a doubly robust (DR) formulation for KT that integrates a propensity model with an error imputation model, theoretically guaranteeing unbiasedness if either model is accurate. Beyond unbiasedness, in the sequential setting of KT, we identify that the estimator's performance is compromised by variance-dependent stochastic deviations that accumulate over time, thereby causing training instability and limiting performance. To mitigate this, we derive a generalization bound that explicitly characterizes the impact of estimator variance and identifies temporal smoothness as a key factor in controlling it. Building on these theoretical insights, we propose the Temporal Smoothness Doubly Robust (TSDR) framework. TSDR jointly optimizes the KT predictor and the imputation model with a smoothness regularizer, effectively reducing variance while preserving the unbiasedness guarantee of DR. Experiments on multiple real-world benchmarks demonstrate that TSDR consistently enhances various state-of-the-art KT backbones, underscoring the vital role of principled bias correction in KT.

9.2LGFeb 13, 2024Code
Feature Attribution with Necessity and Sufficiency via Dual-stage Perturbation Test for Causal Explanation

Xuexin Chen, Ruichu Cai, Zhengting Huang et al.

We investigate the problem of explainability for machine learning models, focusing on Feature Attribution Methods (FAMs) that evaluate feature importance through perturbation tests. Despite their utility, FAMs struggle to distinguish the contributions of different features, when their prediction changes are similar after perturbation. To enhance FAMs' discriminative power, we introduce Feature Attribution with Necessity and Sufficiency (FANS), which find a neighborhood of the input such that perturbing samples within this neighborhood have a high Probability of being Necessity and Sufficiency (PNS) cause for the change in predictions, and use this PNS as the importance of the feature. Specifically, FANS compute this PNS via a heuristic strategy for estimating the neighborhood and a perturbation test involving two stages (factual and interventional) for counterfactual reasoning. To generate counterfactual samples, we use a resampling-based approach on the observed samples to approximate the required conditional distribution. We demonstrate that FANS outperforms existing attribution methods on six benchmarks. Please refer to the source code via \url{https://github.com/DMIRLAB-Group/FANS}.

3.7CVNov 18, 2024Code
TP-UNet: Temporal Prompt Guided UNet for Medical Image Segmentation

Ranmin Wang, Limin Zhuang, Hongkun Chen et al.

The advancement of medical image segmentation techniques has been propelled by the adoption of deep learning techniques, particularly UNet-based approaches, which exploit semantic information to improve the accuracy of segmentations. However, the order of organs in scanned images has been disregarded by current medical image segmentation approaches based on UNet. Furthermore, the inherent network structure of UNet does not provide direct capabilities for integrating temporal information. To efficiently integrate temporal information, we propose TP-UNet that utilizes temporal prompts, encompassing organ-construction relationships, to guide the segmentation UNet model. Specifically, our framework is featured with cross-attention and semantic alignment based on unsupervised contrastive learning to combine temporal prompts and image features effectively. Extensive evaluations on two medical image segmentation datasets demonstrate the state-of-the-art performance of TP-UNet. Our implementation will be open-sourced after acceptance.

7.1LGFeb 23, 2025Code
Time Series Domain Adaptation via Latent Invariant Causal Mechanism

Ruichu Cai, Junxian Huang, Zhenhui Yang et al.

Time series domain adaptation aims to transfer the complex temporal dependence from the labeled source domain to the unlabeled target domain. Recent advances leverage the stable causal mechanism over observed variables to model the domain-invariant temporal dependence. However, modeling precise causal structures in high-dimensional data, such as videos, remains challenging. Additionally, direct causal edges may not exist among observed variables (e.g., pixels). These limitations hinder the applicability of existing approaches to real-world scenarios. To address these challenges, we find that the high-dimension time series data are generated from the low-dimension latent variables, which motivates us to model the causal mechanisms of the temporal latent process. Based on this intuition, we propose a latent causal mechanism identification framework that guarantees the uniqueness of the reconstructed latent causal structures. Specifically, we first identify latent variables by utilizing sufficient changes in historical information. Moreover, by enforcing the sparsity of the relationships of latent variables, we can achieve identifiable latent causal structures. Built on the theoretical results, we develop the Latent Causality Alignment (LCA) model that leverages variational inference, which incorporates an intra-domain latent sparsity constraint for latent structure reconstruction and an inter-domain latent sparsity constraint for domain-invariant structure reconstruction. Experiment results on eight benchmarks show a general improvement in the domain-adaptive time series classification and forecasting tasks, highlighting the effectiveness of our method in real-world scenarios. Codes are available at https://github.com/DMIRLAB-Group/LCA.

4.6LGFeb 7, 2024Code
Learning by Doing: An Online Causal Reinforcement Learning Framework with Causal-Aware Policy

Ruichu Cai, Siyang Huang, Jie Qiao et al.

As a key component to intuitive cognition and reasoning solutions in human intelligence, causal knowledge provides great potential for reinforcement learning (RL) agents' interpretability towards decision-making by helping reduce the searching space. However, there is still a considerable gap in discovering and incorporating causality into RL, which hinders the rapid development of causal RL. In this paper, we consider explicitly modeling the generation process of states with the causal graphical model, based on which we augment the policy. We formulate the causal structure updating into the RL interaction process with active intervention learning of the environment. To optimize the derived objective, we propose a framework with theoretical performance guarantees that alternates between two steps: using interventions for causal structure learning during exploration and using the learned causal structure for policy guidance during exploitation. Due to the lack of public benchmarks that allow direct intervention in the state space, we design the root cause localization task in our simulated fault alarm environment and then empirically show the effectiveness and robustness of the proposed method against state-of-the-art baselines. Theoretical analysis shows that our performance improvement attributes to the virtuous cycle of causal-guided policy learning and causal structure learning, which aligns with our experimental results. Codes are available at https://github.com/DMIRLAB-Group/FaultAlarm_RL.

17.6LGMay 24, 2024
On the Identification of Temporally Causal Representation with Instantaneous Dependence

Zijian Li, Yifan Shen, Kaitao Zheng et al.

Temporally causal representation learning aims to identify the latent causal process from time series observations, but most methods require the assumption that the latent causal processes do not have instantaneous relations. Although some recent methods achieve identifiability in the instantaneous causality case, they require either interventions on the latent variables or grouping of the observations, which are in general difficult to obtain in real-world scenarios. To fill this gap, we propose an \textbf{ID}entification framework for instantane\textbf{O}us \textbf{L}atent dynamics (\textbf{IDOL}) by imposing a sparse influence constraint that the latent causal processes have sparse time-delayed and instantaneous relations. Specifically, we establish identifiability results of the latent causal process based on sufficient variability and the sparse influence constraint by employing contextual information of time series data. Based on these theories, we incorporate a temporally variational inference architecture to estimate the latent variables and a gradient-based sparsity regularization to identify the latent causal process. Experimental results on simulation datasets illustrate that our method can identify the latent causal process. Furthermore, evaluations on multiple human motion forecasting benchmarks with instantaneous dependencies indicate the effectiveness of our method in real-world settings.

6.6LGDec 19, 2023
Identification of Causal Structure in the Presence of Missing Data with Additive Noise Model

Jie Qiao, Zhengming Chen, Jianhua Yu et al.

Missing data are an unavoidable complication frequently encountered in many causal discovery tasks. When a missing process depends on the missing values themselves (known as self-masking missingness), the recovery of the joint distribution becomes unattainable, and detecting the presence of such self-masking missingness remains a perplexing challenge. Consequently, due to the inability to reconstruct the original distribution and to discern the underlying missingness mechanism, simply applying existing causal discovery methods would lead to wrong conclusions. In this work, we found that the recent advances additive noise model has the potential for learning causal structure under the existence of the self-masking missingness. With this observation, we aim to investigate the identification problem of learning causal structure from missing data under an additive noise model with different missingness mechanisms, where the `no self-masking missingness' assumption can be eliminated appropriately. Specifically, we first elegantly extend the scope of identifiability of causal skeleton to the case with weak self-masking missingness (i.e., no other variable could be the cause of self-masking indicators except itself). We further provide the sufficient and necessary identification conditions of the causal direction under additive noise model and show that the causal structure can be identified up to an IN-equivalent pattern. We finally propose a practical algorithm based on the above theoretical results on learning the causal skeleton and causal direction. Extensive experiments on synthetic and real data demonstrate the efficiency and effectiveness of the proposed algorithms.

10.7LGDec 19, 2023
Identification of Causal Structure with Latent Variables Based on Higher Order Cumulants

Wei Chen, Zhiyi Huang, Ruichu Cai et al.

Causal discovery with latent variables is a crucial but challenging task. Despite the emergence of numerous methods aimed at addressing this challenge, they are not fully identified to the structure that two observed variables are influenced by one latent variable and there might be a directed edge in between. Interestingly, we notice that this structure can be identified through the utilization of higher-order cumulants. By leveraging the higher-order cumulants of non-Gaussian data, we provide an analytical solution for estimating the causal coefficients or their ratios. With the estimated (ratios of) causal coefficients, we propose a novel approach to identify the existence of a causal edge between two observed variables subject to latent variable influence. In case when such a causal edge exits, we introduce an asymmetry criterion to determine the causal direction. The experimental results demonstrate the effectiveness of our proposed method.

6.6LGDec 21, 2023Code
Where and How to Attack? A Causality-Inspired Recipe for Generating Counterfactual Adversarial Examples

Ruichu Cai, Yuxuan Zhu, Jie Qiao et al.

Deep neural networks (DNNs) have been demonstrated to be vulnerable to well-crafted \emph{adversarial examples}, which are generated through either well-conceived $\mathcal{L}_p$-norm restricted or unrestricted attacks. Nevertheless, the majority of those approaches assume that adversaries can modify any features as they wish, and neglect the causal generating process of the data, which is unreasonable and unpractical. For instance, a modification in income would inevitably impact features like the debt-to-income ratio within a banking system. By considering the underappreciated causal generating process, first, we pinpoint the source of the vulnerability of DNNs via the lens of causality, then give theoretical results to answer \emph{where to attack}. Second, considering the consequences of the attack interventions on the current state of the examples to generate more realistic adversarial examples, we propose CADE, a framework that can generate \textbf{C}ounterfactual \textbf{AD}versarial \textbf{E}xamples to answer \emph{how to attack}. The empirical results demonstrate CADE's effectiveness, as evidenced by its competitive performance across diverse attack scenarios, including white-box, transfer-based, and random intervention attacks.

13.0CLFeb 16, 2025
CMCTS: A Constrained Monte Carlo Tree Search Framework for Mathematical Reasoning in Large Language Model

Qingwen Lin, Boyan Xu, Guimin Hu et al.

This paper introduces the Constrained Monte Carlo Tree Search (CMCTS) framework to enhance the mathematical reasoning capabilities of Large Language Models (LLM). By incorporating a constrained action space, Process Reward Model (PRM), and partial order rules, CMCTS effectively addresses the limitations of existing MCTS methods in terms of state space diversity and action selection rationality. Specifically, during the expansion phase, CMCTS restricts action sampling to a predefined constrained action set to increase candidate state diversity. In the simulation phase, it introduces partial order rules and PRM to optimize action selection and prevent unreasonable state transitions. Experimental results show that CMCTS performs outstandingly across multiple mathematical reasoning benchmarks. Under a zero-shot setting, a 7B-parameter model achieves an average accuracy of 83.4\%, surpassing the 72B baseline model by 4.8\%. Ablation studies demonstrate that each component of the framework is crucial for performance improvement, and their combined use fully leverages their respective strengths. Overall, the CMCTS framework provides an effective approach to enhancing LLM mathematical reasoning capabilities, supported by theoretical analysis, and offers novel insights for future reasoning tasks.

3.4CLMar 21, 2024
From Large to Tiny: Distilling and Refining Mathematical Expertise for Math Word Problems with Weakly Supervision

Qingwen Lin, Boyan Xu, Zhengting Huang et al.

Addressing the challenge of high annotation costs in solving Math Word Problems (MWPs) through full supervision with intermediate equations, recent works have proposed weakly supervised task settings that rely solely on the final answer as a supervised signal. Existing leading approaches typically employ various search techniques to infer intermediate equations, but cannot ensure their semantic consistency with natural language descriptions. The rise of Large Language Models (LLMs) like ChatGPT has opened up new possibilities for addressing MWPs directly. However, the computational demands of LLMs make them less than ideal for use in settings where resources are tight. In light of these challenges, we introduce an innovative two-stage framework that adeptly transfers mathematical Expertise from large to tiny language models. In \emph{Distillation Stage}, we propose a series of extraction processes that satisfy the properties of MWPs to distill mathematical knowledge from LLMs to construct problem-equation pairs required for supervised training. In \emph{Refinement Stage}, Due to Knowledge distilling method cannot guarantee the full utilization of all data, we further utilize the unsuccessfully searched data effectively by Knowledge Refine method. Finally, We train a small model using distilled data generated through two-stage methods. As our method fully leverages the semantic understanding capabilities during the searching 'problem-equation' pair, it demonstrates significantly improved performance on the Math23K and Weak12K datasets compared to existing small model methods, while maintaining a much lower computational cost than ChatGPT.

14.4LGMar 1, 2025Code
Synergy Between Sufficient Changes and Sparse Mixing Procedure for Disentangled Representation Learning

Zijian Li, Shunxing Fan, Yujia Zheng et al.

Disentangled representation learning aims to uncover latent variables underlying the observed data, and generally speaking, rather strong assumptions are needed to ensure identifiability. Some approaches rely on sufficient changes on the distribution of latent variables indicated by auxiliary variables such as domain indices, but acquiring enough domains is often challenging. Alternative approaches exploit structural sparsity assumptions on the mixing procedure, but such constraints are usually (partially) violated in practice. Interestingly, we find that these two seemingly unrelated assumptions can actually complement each other to achieve identifiability. Specifically, when conditioned on auxiliary variables, the sparse mixing procedure assumption provides structural constraints on the mapping from estimated to true latent variables and hence compensates for potentially insufficient distribution changes. Building on this insight, we propose an identifiability theory with less restrictive constraints regarding distribution changes and the sparse mixing procedure, enhancing applicability to real-world scenarios. Additionally, we develop an estimation framework incorporating a domain encoding network and a sparse mixing constraint and provide two implementations based on variational autoencoders and generative adversarial networks, respectively. Experiment results on synthetic and real-world datasets support our theoretical results.

9.4LGFeb 18, 2025Code
Disentangling Long-Short Term State Under Unknown Interventions for Online Time Series Forecasting

Ruichu Cai, Haiqin Huang, Zhifang Jiang et al.

Current methods for time series forecasting struggle in the online scenario, since it is difficult to preserve long-term dependency while adapting short-term changes when data are arriving sequentially. Although some recent methods solve this problem by controlling the updates of latent states, they cannot disentangle the long/short-term states, leading to the inability to effectively adapt to nonstationary. To tackle this challenge, we propose a general framework to disentangle long/short-term states for online time series forecasting. Our idea is inspired by the observations where short-term changes can be led by unknown interventions like abrupt policies in the stock market. Based on this insight, we formalize a data generation process with unknown interventions on short-term states. Under mild assumptions, we further leverage the independence of short-term states led by unknown interventions to establish the identification theory to achieve the disentanglement of long/short-term states. Built on this theory, we develop a long short-term disentanglement model (LSTD) to extract the long/short-term states with long/short-term encoders, respectively. Furthermore, the LSTD model incorporates a smooth constraint to preserve the long-term dependencies and an interrupted dependency constraint to enforce the forgetting of short-term dependencies, together boosting the disentanglement of long/short-term states. Experimental results on several benchmark datasets show that our \textbf{LSTD} model outperforms existing methods for online time series forecasting, validating its efficacy in real-world applications.

13.0LGMay 30, 2025Code
Causal-aware Large Language Models: Enhancing Decision-Making Through Learning, Adapting and Acting

Wei Chen, Jiahao Zhang, Haipeng Zhu et al.

Large language models (LLMs) have shown great potential in decision-making due to the vast amount of knowledge stored within the models. However, these pre-trained models are prone to lack reasoning abilities and are difficult to adapt to new environments, further hindering their application to complex real-world tasks. To address these challenges, inspired by the human cognitive process, we propose Causal-aware LLMs, which integrate the structural causal model (SCM) into the decision-making process to model, update, and utilize structured knowledge of the environment in a ``learning-adapting-acting" paradigm. Specifically, in the learning stage, we first utilize an LLM to extract the environment-specific causal entities and their causal relations to initialize a structured causal model of the environment. Subsequently,in the adapting stage, we update the structured causal model through external feedback about the environment, via an idea of causal intervention. Finally, in the acting stage, Causal-aware LLMs exploit structured causal knowledge for more efficient policy-making through the reinforcement learning agent. The above processes are performed iteratively to learn causal knowledge, ultimately enabling the causal-aware LLMs to achieve a more accurate understanding of the environment and make more efficient decisions. Experimental results across 22 diverse tasks within the open-world game ``Crafter" validate the effectiveness of our proposed method.

9.4LGFeb 26, 2025
Nonparametric Heterogeneous Long-term Causal Effect Estimation via Data Combination

Weilin Chen, Ruichu Cai, Junjie Wan et al.

Long-term causal inference has drawn increasing attention in many scientific domains. Existing methods mainly focus on estimating average long-term causal effects by combining long-term observational data and short-term experimental data. However, it is still understudied how to robustly and effectively estimate heterogeneous long-term causal effects, significantly limiting practical applications. In this paper, we propose several two-stage style nonparametric estimators for heterogeneous long-term causal effect estimation, including propensity-based, regression-based, and multiple robust estimators. We conduct a comprehensive theoretical analysis of their asymptotic properties under mild assumptions, with the ultimate goal of building a better understanding of the conditions under which some estimators can be expected to perform better. Extensive experiments across several semi-synthetic and real-world datasets validate the theoretical results and demonstrate the effectiveness of the proposed estimators.

6.4LGFeb 14, 2024
Unifying Invariance and Spuriousity for Graph Out-of-Distribution via Probability of Necessity and Sufficiency

Xuexin Chen, Ruichu Cai, Kaitao Zheng et al.

Graph Out-of-Distribution (OOD), requiring that models trained on biased data generalize to the unseen test data, has a massive of real-world applications. One of the most mainstream methods is to extract the invariant subgraph by aligning the original and augmented data with the help of environment augmentation. However, these solutions might lead to the loss or redundancy of semantic subgraph and further result in suboptimal generalization. To address this challenge, we propose a unified framework to exploit the Probability of Necessity and Sufficiency to extract the Invariant Substructure (PNSIS). Beyond that, this framework further leverages the spurious subgraph to boost the generalization performance in an ensemble manner to enhance the robustness on the noise data. Specificially, we first consider the data generation process for graph data. Under mild conditions, we show that the invariant subgraph can be extracted by minimizing an upper bound, which is built on the theoretical advance of probability of necessity and sufficiency. To further bridge the theory and algorithm, we devise the PNSIS model, which involves an invariant subgraph extractor for invariant graph learning as well invariant and spurious subgraph classifiers for generalization enhancement. Experimental results demonstrate that our \textbf{PNSIS} model outperforms the state-of-the-art techniques on graph OOD on several benchmarks, highlighting the effectiveness in real-world scenarios.

9.4LGMay 8, 2025Code
Long-Term Individual Causal Effect Estimation via Identifiable Latent Representation Learning

Ruichu Cai, Junjie Wan, Weilin Chen et al.

Estimating long-term causal effects by combining long-term observational and short-term experimental data is a crucial but challenging problem in many real-world scenarios. In existing methods, several ideal assumptions, e.g. latent unconfoundedness assumption or additive equi-confounding bias assumption, are proposed to address the latent confounder problem raised by the observational data. However, in real-world applications, these assumptions are typically violated which limits their practical effectiveness. In this paper, we tackle the problem of estimating the long-term individual causal effects without the aforementioned assumptions. Specifically, we propose to utilize the natural heterogeneity of data, such as data from multiple sources, to identify latent confounders, thereby significantly avoiding reliance on idealized assumptions. Practically, we devise a latent representation learning-based estimator of long-term causal effects. Theoretically, we establish the identifiability of latent confounders, with which we further achieve long-term effect identification. Extensive experimental studies, conducted on multiple synthetic and semi-synthetic datasets, demonstrate the effectiveness of our proposed method.

9.4LGFeb 26, 2025
Long-term Causal Inference via Modeling Sequential Latent Confounding

Weilin Chen, Ruichu Cai, Yuguang Yan et al.

Long-term causal inference is an important but challenging problem across various scientific domains. To solve the latent confounding problem in long-term observational studies, existing methods leverage short-term experimental data. Ghassami et al. propose an approach based on the Conditional Additive Equi-Confounding Bias (CAECB) assumption, which asserts that the confounding bias in the short-term outcome is equal to that in the long-term outcome, so that the long-term confounding bias and the causal effects can be identified. While effective in certain cases, this assumption is limited to scenarios where there is only one short-term outcome with the same scale as the long-term outcome. In this paper, we introduce a novel assumption that extends the CAECB assumption to accommodate temporal short-term outcomes. Our proposed assumption states a functional relationship between sequential confounding biases across temporal short-term outcomes, under which we theoretically establish the identification of long-term causal effects. Based on the identification result, we develop an estimator and conduct a theoretical analysis of its asymptotic properties. Extensive experiments validate our theoretical results and demonstrate the effectiveness of the proposed method.

5.5MLMar 25, 2024
Causal Discovery from Poisson Branching Structural Causal Model Using High-Order Cumulant with Path Analysis

Jie Qiao, Yu Xiang, Zhengming Chen et al.

Count data naturally arise in many fields, such as finance, neuroscience, and epidemiology, and discovering causal structure among count data is a crucial task in various scientific and industrial scenarios. One of the most common characteristics of count data is the inherent branching structure described by a binomial thinning operator and an independent Poisson distribution that captures both branching and noise. For instance, in a population count scenario, mortality and immigration contribute to the count, where survival follows a Bernoulli distribution, and immigration follows a Poisson distribution. However, causal discovery from such data is challenging due to the non-identifiability issue: a single causal pair is Markov equivalent, i.e., $X\rightarrow Y$ and $Y\rightarrow X$ are distributed equivalent. Fortunately, in this work, we found that the causal order from $X$ to its child $Y$ is identifiable if $X$ is a root vertex and has at least two directed paths to $Y$, or the ancestor of $X$ with the most directed path to $X$ has a directed path to $Y$ without passing $X$. Specifically, we propose a Poisson Branching Structure Causal Model (PB-SCM) and perform a path analysis on PB-SCM using high-order cumulants. Theoretical results establish the connection between the path and cumulant and demonstrate that the path information can be obtained from the cumulant. With the path information, causal order is identifiable under some graphical conditions. A practical algorithm for learning causal structure under PB-SCM is proposed and the experiments demonstrate and verify the effectiveness of the proposed method.

7.9LGFeb 20, 2024
Nonstationary Time Series Forecasting via Unknown Distribution Adaptation

Zijian Li, Ruichu Cai, Zhenhui Yang et al.

As environments evolve, temporal distribution shifts can degrade time series forecasting performance. A straightforward solution is to adapt to nonstationary changes while preserving stationary dependencies. Hence, some methods disentangle stationary and nonstationary components by assuming uniform distribution shifts, but it is impractical since when the distribution changes is unknown. To address this challenge, we propose the \textbf{U}nknown \textbf{D}istribution \textbf{A}daptation (\textbf{UDA}) model for nonstationary time series forecasting, which detects when distribution shifts occur and disentangles stationary/nonstationary latent variables, thus enabling adaptation to unknown distribution without assuming a uniform distribution shift. Specifically, under a Hidden Markov assumption of latent environments, we demonstrate that the latent environments are identifiable. Sequentially, we further disentangle stationary/nonstationary latent variables by leveraging the variability of historical information. Based on these theoretical results, we propose a variational autoencoder-based model, which incorporates an autoregressive hidden Markov model to estimate latent environments. Additionally, we further devise the modular prior networks to disentangle stationary/nonstationary latent variables. These two modules realize automatic adaptation and enhance nonstationary forecasting performance. Experimental results on several datasets validate the effectiveness of our approach.

14.4LGOct 21, 2025
Towards Identifiability of Hierarchical Temporal Causal Representation Learning

Zijian Li, Minghao Fu, Junxian Huang et al.

Modeling hierarchical latent dynamics behind time series data is critical for capturing temporal dependencies across multiple levels of abstraction in real-world tasks. However, existing temporal causal representation learning methods fail to capture such dynamics, as they fail to recover the joint distribution of hierarchical latent variables from \textit{single-timestep observed variables}. Interestingly, we find that the joint distribution of hierarchical latent variables can be uniquely determined using three conditionally independent observations. Building on this insight, we propose a Causally Hierarchical Latent Dynamic (CHiLD) identification framework. Our approach first employs temporal contextual observed variables to identify the joint distribution of multi-layer latent variables. Sequentially, we exploit the natural sparsity of the hierarchical structure among latent variables to identify latent variables within each layer. Guided by the theoretical results, we develop a time series generative model grounded in variational inference. This model incorporates a contextual encoder to reconstruct multi-layer latent variables and normalize flow-based hierarchical prior networks to impose the independent noise condition of hierarchical latent dynamics. Empirical evaluations on both synthetic and real-world datasets validate our theoretical claims and demonstrate the effectiveness of CHiLD in modeling hierarchical latent dynamics.

11.4LGOct 21, 2025
Online Time Series Forecasting with Theoretical Guarantees

Zijian Li, Changze Zhou, Minghao Fu et al.

This paper is concerned with online time series forecasting, where unknown distribution shifts occur over time, i.e., latent variables influence the mapping from historical to future observations. To develop an automated way of online time series forecasting, we propose a Theoretical framework for Online Time-series forecasting (TOT in short) with theoretical guarantees. Specifically, we prove that supplying a forecaster with latent variables tightens the Bayes risk, the benefit endures under estimation uncertainty of latent variables and grows as the latent variables achieve a more precise identifiability. To better introduce latent variables into online forecasting algorithms, we further propose to identify latent variables with minimal adjacent observations. Based on these results, we devise a model-agnostic blueprint by employing a temporal decoder to match the distribution of observed variables and two independent noise estimators to model the causal inference of latent variables and mixing procedures of observed variables, respectively. Experiment results on synthetic data support our theoretical claims. Moreover, plug-in implementations built on several baselines yield general improvement across multiple benchmarks, highlighting the effectiveness in real-world applications.

5.8AIAug 4, 2025
CAMA: Enhancing Mathematical Reasoning in Large Language Models with Causal Knowledge

Lei Zan, Keli Zhang, Ruichu Cai et al.

Large Language Models (LLMs) have demonstrated strong performance across a wide range of tasks, yet they still struggle with complex mathematical reasoning, a challenge fundamentally rooted in deep structural dependencies. To address this challenge, we propose \textbf{CA}usal \textbf{MA}thematician (\textbf{CAMA}), a two-stage causal framework that equips LLMs with explicit, reusable mathematical structure. In the learning stage, CAMA first constructs the \textbf{M}athematical \textbf{C}ausal \textbf{G}raph (\textbf{MCG}), a high-level representation of solution strategies, by combining LLM priors with causal discovery algorithms applied to a corpus of question-solution pairs. The resulting MCG encodes essential knowledge points and their causal dependencies. To better align the graph with downstream reasoning tasks, CAMA further refines the MCG through iterative feedback derived from a selected subset of the question-solution pairs. In the reasoning stage, given a new question, CAMA dynamically extracts a task-relevant subgraph from the MCG, conditioned on both the question content and the LLM's intermediate reasoning trace. This subgraph, which encodes the most pertinent knowledge points and their causal dependencies, is then injected back into the LLM to guide its reasoning process. Empirical results on real-world datasets show that CAMA significantly improves LLM performance on challenging mathematical problems. Furthermore, our experiments demonstrate that structured guidance consistently outperforms unstructured alternatives, and that incorporating asymmetric causal relationships yields greater improvements than using symmetric associations alone.

7.1LGJul 9, 2025
Horizontal and Vertical Federated Causal Structure Learning via Higher-order Cumulants

Wei Chen, Wanyang Gu, Linjun Peng et al.

Federated causal discovery aims to uncover the causal relationships between entities while protecting data privacy, which has significant importance and numerous applications in real-world scenarios. Existing federated causal structure learning methods primarily focus on horizontal federated settings. However, in practical situations, different clients may not necessarily contain data on the same variables. In a single client, the incomplete set of variables can easily lead to spurious causal relationships, thereby affecting the information transmitted to other clients. To address this issue, we comprehensively consider causal structure learning methods under both horizontal and vertical federated settings. We provide the identification theories and methods for learning causal structure in the horizontal and vertical federal setting via higher-order cumulants. Specifically, we first aggregate higher-order cumulant information from all participating clients to construct global cumulant estimates. These global estimates are then used for recursive source identification, ultimately yielding a global causal strength matrix. Our approach not only enables the reconstruction of causal graphs but also facilitates the estimation of causal strength coefficients. Our algorithm demonstrates superior performance in experiments conducted on both synthetic data and real-world data.

7.1LGMay 12, 2025
Causal View of Time Series Imputation: Some Identification Results on Missing Mechanism

Ruichu Cai, Kaitao Zheng, Junxian Huang et al.

Time series imputation is one of the most challenge problems and has broad applications in various fields like health care and the Internet of Things. Existing methods mainly aim to model the temporally latent dependencies and the generation process from the observed time series data. In real-world scenarios, different types of missing mechanisms, like MAR (Missing At Random), and MNAR (Missing Not At Random) can occur in time series data. However, existing methods often overlook the difference among the aforementioned missing mechanisms and use a single model for time series imputation, which can easily lead to misleading results due to mechanism mismatching. In this paper, we propose a framework for time series imputation problem by exploring Different Missing Mechanisms (DMM in short) and tailoring solutions accordingly. Specifically, we first analyze the data generation processes with temporal latent states and missing cause variables for different mechanisms. Sequentially, we model these generation processes via variational inference and estimate prior distributions of latent variables via normalizing flow-based neural architecture. Furthermore, we establish identifiability results under the nonlinear independent component analysis framework to show that latent variables are identifiable. Experimental results show that our method surpasses existing time series imputation techniques across various datasets with different missing mechanisms, demonstrating its effectiveness in real-world applications.

4.1LGMar 8, 2025
Interpretable High-order Knowledge Graph Neural Network for Predicting Synthetic Lethality in Human Cancers

Xuexin Chen, Ruichu Cai, Zhengting Huang et al.

Synthetic lethality (SL) is a promising gene interaction for cancer therapy. Recent SL prediction methods integrate knowledge graphs (KGs) into graph neural networks (GNNs) and employ attention mechanisms to extract local subgraphs as explanations for target gene pairs. However, attention mechanisms often lack fidelity, typically generate a single explanation per gene pair, and fail to ensure trustworthy high-order structures in their explanations. To overcome these limitations, we propose Diverse Graph Information Bottleneck for Synthetic Lethality (DGIB4SL), a KG-based GNN that generates multiple faithful explanations for the same gene pair and effectively encodes high-order structures. Specifically, we introduce a novel DGIB objective, integrating a Determinant Point Process (DPP) constraint into the standard IB objective, and employ 13 motif-based adjacency matrices to capture high-order structures in gene representations. Experimental results show that DGIB4SL outperforms state-of-the-art baselines and provides multiple explanations for SL prediction, revealing diverse biological mechanisms underlying SL inference.

7.1LGFeb 27, 2025
Causal Effect Estimation under Networked Interference without Networked Unconfoundedness Assumption

Weilin Chen, Ruichu Cai, Jie Qiao et al.

Estimating causal effects under networked interference from observational data is a crucial yet challenging problem. Most existing methods mainly rely on the networked unconfoundedness assumption, which guarantees the identification of networked effects. However, this assumption is often violated due to the latent confounders inherent in observational data, thereby hindering the identification of networked effects. To address this issue, we leverage the rich interaction patterns between units in networks, which provide valuable information for recovering these latent confounders. Building on this insight, we develop a confounder recovery framework that explicitly characterizes three categories of latent confounders in networked settings: those affecting only the unit, those affecting only the unit's neighbors, and those influencing both. Based on this framework, we design a networked effect estimator using identifiable representation learning techniques. From a theoretical standpoint, we prove the identifiability of all three types of latent confounders and, by leveraging the recovered confounders, establish a formal identification result for networked effects. Extensive experiments validate our theoretical findings and demonstrate the effectiveness of the proposed method.

9.2LGJun 27, 2024
Estimating Long-term Heterogeneous Dose-response Curve: Generalization Bound Leveraging Optimal Transport Weights

Zeqin Yang, Weilin Chen, Ruichu Cai et al.

Long-term treatment effect estimation is a significant but challenging problem in many applications. Existing methods rely on ideal assumptions, such as no unobserved confounders or binary treatment, to estimate long-term average treatment effects. However, in numerous real-world applications, these assumptions could be violated, and average treatment effects are insufficient for personalized decision-making. In this paper, we address a more general problem of estimating long-term Heterogeneous Dose-Response Curve (HDRC) while accounting for unobserved confounders and continuous treatment. Specifically, to remove the unobserved confounders in the long-term observational data, we introduce an optimal transport weighting framework to align the long-term observational data to an auxiliary short-term experimental data. Furthermore, to accurately predict the heterogeneous effects of continuous treatment, we establish a generalization bound on counterfactual prediction error by leveraging the reweighted distribution induced by optimal transport. Finally, we develop a long-term HDRC estimator building upon the above theoretical foundations. Extensive experiments on synthetic and semi-synthetic datasets demonstrate the effectiveness of our approach.

9.2LGJun 11, 2024
Learning Discrete Latent Variable Structures with Tensor Rank Conditions

Zhengming Chen, Ruichu Cai, Feng Xie et al.

Unobserved discrete data are ubiquitous in many scientific disciplines, and how to learn the causal structure of these latent variables is crucial for uncovering data patterns. Most studies focus on the linear latent variable model or impose strict constraints on latent structures, which fail to address cases in discrete data involving non-linear relationships or complex latent structures. To achieve this, we explore a tensor rank condition on contingency tables for an observed variable set $\mathbf{X}_p$, showing that the rank is determined by the minimum support of a specific conditional set (not necessary in $\mathbf{X}_p$) that d-separates all variables in $\mathbf{X}_p$. By this, one can locate the latent variable through probing the rank on different observed variables set, and further identify the latent causal structure under some structure assumptions. We present the corresponding identification algorithm and conduct simulated experiments to verify the effectiveness of our method. In general, our results elegantly extend the identification boundary for causal discovery with discrete latent variables and expand the application scope of causal discovery with latent variables.

1.9CLJun 5, 2024Code
S$^2$GSL: Incorporating Segment to Syntactic Enhanced Graph Structure Learning for Aspect-based Sentiment Analysis

Bingfeng Chen, Qihan Ouyang, Yongqi Luo et al.

Previous graph-based approaches in Aspect based Sentiment Analysis(ABSA) have demonstrated impressive performance by utilizing graph neural networks and attention mechanisms to learn structures of static dependency trees and dynamic latent trees. However, incorporating both semantic and syntactic information simultaneously within complex global structures can introduce irrelevant contexts and syntactic dependencies during the process of graph structure learning, potentially resulting in inaccurate predictions. In order to address the issues above, we propose S$^2$GSL, incorporating Segment to Syntactic enhanced Graph Structure Learning for ABSA. Specifically,S$^2$GSL is featured with a segment-aware semantic graph learning and a syntax-based latent graph learning enabling the removal of irrelevant contexts and dependencies, respectively. We further propose a self-adaptive aggregation network that facilitates the fusion of two graph learning branches, thereby achieving complementarity across diverse structures. Experimental results on four benchmarks demonstrate the effectiveness of our framework.

18.2LGMay 6, 2024Code
Doubly Robust Causal Effect Estimation under Networked Interference via Targeted Learning

Weilin Chen, Ruichu Cai, Zeqin Yang et al.

Causal effect estimation under networked interference is an important but challenging problem. Available parametric methods are limited in their model space, while previous semiparametric methods, e.g., leveraging neural networks to fit only one single nuisance function, may still encounter misspecification problems under networked interference without appropriate assumptions on the data generation process. To mitigate bias stemming from misspecification, we propose a novel doubly robust causal effect estimator under networked interference, by adapting the targeted learning technique to the training of neural networks. Specifically, we generalize the targeted learning technique into the networked interference setting and establish the condition under which an estimator achieves double robustness. Based on the condition, we devise an end-to-end causal effect estimator by transforming the identified theoretical condition into a targeted loss. Moreover, we provide a theoretical analysis of our designed estimator, revealing a faster convergence rate compared to a single nuisance model. Extensive experimental results on two real-world networks with semisynthetic data demonstrate the effectiveness of our proposed estimators.

2.2IRFeb 24, 2024
Debiased Model-based Interactive Recommendation

Zijian Li, Ruichu Cai, Haiqin Huang et al.

Existing model-based interactive recommendation systems are trained by querying a world model to capture the user preference, but learning the world model from historical logged data will easily suffer from bias issues such as popularity bias and sampling bias. This is why some debiased methods have been proposed recently. However, two essential drawbacks still remain: 1) ignoring the dynamics of the time-varying popularity results in a false reweighting of items. 2) taking the unknown samples as negative samples in negative sampling results in the sampling bias. To overcome these two drawbacks, we develop a model called \textbf{i}dentifiable \textbf{D}ebiased \textbf{M}odel-based \textbf{I}nteractive \textbf{R}ecommendation (\textbf{iDMIR} in short). In iDMIR, for the first drawback, we devise a debiased causal world model based on the causal mechanism of the time-varying recommendation generation process with identification guarantees; for the second drawback, we devise a debiased contrastive policy, which coincides with the debiased contrastive learning and avoids sampling bias. Moreover, we demonstrate that the proposed method not only outperforms several latest interactive recommendation algorithms but also enjoys diverse recommendation performance.

14.9LGMay 31, 2023
Causal Discovery with Latent Confounders Based on Higher-Order Cumulants

Ruichu Cai, Zhiyi Huang, Wei Chen et al.

Causal discovery with latent confounders is an important but challenging task in many scientific areas. Despite the success of some overcomplete independent component analysis (OICA) based methods in certain domains, they are computationally expensive and can easily get stuck into local optima. We notice that interestingly, by making use of higher-order cumulants, there exists a closed-form solution to OICA in specific cases, e.g., when the mixing procedure follows the One-Latent-Component structure. In light of the power of the closed-form solution to OICA corresponding to the One-Latent-Component structure, we formulate a way to estimate the mixing matrix using the higher-order cumulants, and further propose the testable One-Latent-Component condition to identify the latent variables and determine causal orders. By iteratively removing the share identified latent components, we successfully extend the results on the One-Latent-Component structure to the Multi-Latent-Component structure and finally provide a practical and asymptotically correct algorithm to learn the causal structure with latent variables. Experimental results illustrate the asymptotic correctness and effectiveness of the proposed method.

13.0LGMay 10, 2023Code
Structural Hawkes Processes for Learning Causal Structure from Discrete-Time Event Sequences

Jie Qiao, Ruichu Cai, Siyu Wu et al.

Learning causal structure among event types from discrete-time event sequences is a particularly important but challenging task. Existing methods, such as the multivariate Hawkes processes based methods, mostly boil down to learning the so-called Granger causality which assumes that the cause event happens strictly prior to its effect event. Such an assumption is often untenable beyond applications, especially when dealing with discrete-time event sequences in low-resolution; and typical discrete Hawkes processes mainly suffer from identifiability issues raised by the instantaneous effect, i.e., the causal relationship that occurred simultaneously due to the low-resolution data will not be captured by Granger causality. In this work, we propose Structure Hawkes Processes (SHPs) that leverage the instantaneous effect for learning the causal structure among events type in discrete-time event sequence. The proposed method is featured with the minorization-maximization of the likelihood function and a sparse optimization scheme. Theoretical results show that the instantaneous effect is a blessing rather than a curse, and the causal structure is identifiable under the existence of the instantaneous effect. Experiments on synthetic and real-world data verify the effectiveness of the proposed method.