Zhuohang Yu

Jiarong Ye, Yin-Ting Yeh, Yuan Xue et al.

Rapid identification of newly emerging or circulating viruses is an important first step toward managing the public health response to potential outbreaks. A portable virus capture device coupled with label-free Raman Spectroscopy holds the promise of fast detection by rapidly obtaining the Raman signature of a virus followed by a machine learning approach applied to recognize the virus based on its Raman spectrum, which is used as a fingerprint. We present such a machine learning approach for analyzing Raman spectra of human and avian viruses. A Convolutional Neural Network (CNN) classifier specifically designed for spectral data achieves very high accuracy for a variety of virus type or subtype identification tasks. In particular, it achieves 99% accuracy for classifying influenza virus type A vs. type B, 96% accuracy for classifying four subtypes of influenza A, 95% accuracy for differentiating enveloped and non-enveloped viruses, and 99% accuracy for differentiating avian coronavirus (infectious bronchitis virus, IBV) from other avian viruses. Furthermore, interpretation of neural net responses in the trained CNN model using a full-gradient algorithm highlights Raman spectral ranges that are most important to virus identification. By correlating ML-selected salient Raman ranges with the signature ranges of known biomolecules and chemical functional groups (for example, amide, amino acid, carboxylic acid), we verify that our ML model effectively recognizes the Raman signatures of proteins, lipids and other vital functional groups present in different viruses and uses a weighted combination of these signatures to identify viruses.

Zhuohang Yu, Ling An, Yansong Li et al.

Conventional methods, including Decision Tree (DT)-based methods, have been effective in scientific tasks, such as non-image medical diagnostics, system anomaly detection, and inorganic catalysis efficiency prediction. However, most deep-learning techniques have struggled to surpass or even match this level of success as traditional machine-learning methods. The primary reason is that these applications involve multi-source, heterogeneous data where features lack explicit relationships. This contrasts with image data, where pixels exhibit spatial relationships; textual data, where words have sequential dependencies; and graph data, where nodes are connected through established associations. The absence of explicit Feature Relation Patterns (FRPs) presents a significant challenge for deep learning techniques in scientific applications that are not image, text, and graph-based. In this paper, we introduce EAPCR, a universal feature extractor designed for data without explicit FRPs. Tested across various scientific tasks, EAPCR consistently outperforms traditional methods and bridges the gap where deep learning models fall short. To further demonstrate its robustness, we synthesize a dataset without explicit FRPs. While Kolmogorov-Arnold Network (KAN) and feature extractors like Convolutional Neural Networks (CNNs), Graph Convolutional Networks (GCNs), and Transformers struggle, EAPCR excels, demonstrating its robustness and superior performance in scientific tasks without FRPs.

Zhangdi Liu, Ling An, Mengke Song et al.

The design of inorganic catalysts and the prediction of their catalytic efficiency are fundamental challenges in chemistry and materials science. Traditional catalyst evaluation methods primarily rely on machine learning techniques; however, these methods often struggle to process multi-source heterogeneous data, limiting both predictive accuracy and generalization. To address these limitations, this study introduces the Embedding-Attention-Permutated CNN-Residual (EAPCR) deep learning model. EAPCR constructs a feature association matrix using embedding and attention mechanisms and enhances predictive performance through permutated CNN architectures and residual connections. This approach enables the model to accurately capture complex feature interactions across various catalytic conditions, leading to precise efficiency predictions. EAPCR serves as a powerful tool for computational researchers while also assisting domain experts in optimizing catalyst design, effectively bridging the gap between data-driven modeling and experimental applications. We evaluate EAPCR on datasets from TiO2 photocatalysis, thermal catalysis, and electrocatalysis, demonstrating its superiority over traditional machine learning methods (e.g., linear regression, random forest) as well as conventional deep learning models (e.g., ANN, NNs). Across multiple evaluation metrics (MAE, MSE, R2, and RMSE), EAPCR consistently outperforms existing approaches. These findings highlight the strong potential of EAPCR in inorganic catalytic efficiency prediction. As a versatile deep learning framework, EAPCR not only improves predictive accuracy but also establishes a solid foundation for future large-scale model development in inorganic catalysis.

Zhuohang Yu, Kai Wang, Kun Huang et al.

We introduce a novel approach for depth estimation using images obtained from monocular structured light systems. In contrast to many existing methods that depend on image matching, our technique employs a density voxel grid to represent scene geometry. This grid is trained through self-supervised differentiable volume rendering. Our method leverages color fields derived from the projected patterns in structured light systems during the rendering process, facilitating the isolated optimization of the geometry field. This innovative approach leads to faster convergence and high-quality results. Additionally, we integrate normalized device coordinates (NDC), a distortion loss, and a distinctive surface-based color loss to enhance geometric fidelity. Experimental results demonstrate that our method outperforms current matching-based techniques in terms of geometric performance in few-shot scenarios, achieving an approximately 30% reduction in average estimated depth errors for both synthetic scenes and real-world captured scenes. Moreover, our approach allows for rapid training, being approximately three times faster than previous matching-free methods that utilize implicit representations.